Strain Fitness in Shewanella amazonensis SB2B around Sama_2548

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
3,055,804	+		Sama_2546	0.80	+0.4
3,055,805	-		Sama_2546	0.80	+0.1
3,055,924	-				-0.7
3,055,950	+				+0.0
3,055,950	+				-0.5
3,055,951	-				-1.0
3,055,979	+				-1.0
3,055,979	+				+0.5
3,055,980	-				+0.5
3,055,980	-				+1.3
3,056,049	-				+0.9
3,056,106	-		Sama_2547	0.15	-0.6
3,056,106	-		Sama_2547	0.15	-1.8
3,056,149	-		Sama_2547	0.22	-1.2
3,056,279	+		Sama_2547	0.43	-0.8
3,056,279	+		Sama_2547	0.43	-1.2
3,056,279	+		Sama_2547	0.43	+0.6
3,056,280	-		Sama_2547	0.43	-1.2
3,056,280	-		Sama_2547	0.43	-0.8
3,056,280	-		Sama_2547	0.43	-0.2
3,056,280	-		Sama_2547	0.43	-0.6
3,056,303	+		Sama_2547	0.47	-2.3
3,056,304	-		Sama_2547	0.47	-0.7
3,056,319	-		Sama_2547	0.50	-0.5
3,056,319	-		Sama_2547	0.50	-0.7
3,056,354	+		Sama_2547	0.55	-0.2
3,056,354	+		Sama_2547	0.55	-0.8
3,056,365	-		Sama_2547	0.57	-0.1
3,056,368	+		Sama_2547	0.58	-1.2
3,056,368	+		Sama_2547	0.58	-0.5
3,056,368	+		Sama_2547	0.58	-0.3
3,056,368	+		Sama_2547	0.58	+1.5
3,056,369	-		Sama_2547	0.58	-0.1
3,056,369	-		Sama_2547	0.58	+0.0
3,056,369	-		Sama_2547	0.58	-0.5
3,056,395	+		Sama_2547	0.62	-0.5
3,056,398	-		Sama_2547	0.62	+0.6
3,056,413	+		Sama_2547	0.65	-0.2
3,056,473	+		Sama_2547	0.75	-0.4
3,056,474	-		Sama_2547	0.75	-1.2
3,056,480	+		Sama_2547	0.76	+1.1
3,056,560	-		Sama_2547	0.89	-0.1
3,056,560	-		Sama_2547	0.89	-1.6
3,056,560	-		Sama_2547	0.89	-1.9
3,056,640	+				-0.8
3,056,640	+				+0.2
3,056,640	+				-1.0
3,056,640	+				+0.5
3,056,640	+				-0.5
3,056,640	+				-0.9
3,056,641	-				+0.0
3,056,641	-				-1.1
3,056,641	-				+0.3
3,056,641	-				+0.0
3,056,641	-				-0.0
3,056,651	+				+1.0
3,056,711	+				+1.2
3,056,711	+				+0.5
3,056,721	+				+1.3
3,056,721	+				+0.3
3,056,721	+				-0.4
3,056,721	+				-0.9
3,056,721	+				-0.7
3,056,721	+				-0.8
3,056,722	-				+0.0
3,056,991	+		Sama_2548	0.23	-1.1
3,056,991	+		Sama_2548	0.23	-0.5
3,056,992	-		Sama_2548	0.23	-0.2
3,057,037	+		Sama_2548	0.27	+0.2
3,057,037	+		Sama_2548	0.27	+0.6
3,057,083	+		Sama_2548	0.31	-0.8
3,057,083	+		Sama_2548	0.31	+0.0
3,057,083	+		Sama_2548	0.31	-0.2
3,057,084	-		Sama_2548	0.31	-0.2
3,057,084	-		Sama_2548	0.31	+0.0
3,057,276	+		Sama_2548	0.48	-1.1
3,057,276	+		Sama_2548	0.48	-0.7
3,057,276	+		Sama_2548	0.48	-1.1
3,057,312	+		Sama_2548	0.51	-1.4
3,057,313	-		Sama_2548	0.51	+0.4
3,057,473	+		Sama_2548	0.65	+0.8
3,057,473	+		Sama_2548	0.65	-1.1
3,057,473	+		Sama_2548	0.65	-0.1
3,057,474	-		Sama_2548	0.65	+0.3
3,057,474	-		Sama_2548	0.65	+0.0
3,057,474	-		Sama_2548	0.65	-0.8
3,057,499	+		Sama_2548	0.67	+0.3
3,057,500	-		Sama_2548	0.68	-0.9
3,057,517	+		Sama_2548	0.69	-1.2
3,057,517	+		Sama_2548	0.69	-1.6
3,057,518	-		Sama_2548	0.69	-2.6
3,057,518	-		Sama_2548	0.69	-0.5
3,057,620	+		Sama_2548	0.78	+0.0
3,057,620	+		Sama_2548	0.78	+0.1
3,057,620	+		Sama_2548	0.78	-0.7
3,057,693	+		Sama_2548	0.84	-0.8
3,057,693	+		Sama_2548	0.84	+0.1
3,057,693	+		Sama_2548	0.84	+0.0
3,057,702	+		Sama_2548	0.85	-0.7
3,057,703	-		Sama_2548	0.85	-0.9
3,057,720	+		Sama_2548	0.87	-0.2
3,057,721	-		Sama_2548	0.87	-1.4
3,057,721	-		Sama_2548	0.87	-0.5
3,057,764	+				+0.8
3,057,764	+				-0.2
3,057,764	+				-0.1
3,057,764	+				+0.3
3,057,764	+				-0.2
3,057,765	-				-0.3
3,057,765	-				+1.3
3,057,765	-				+2.3
3,057,765	-				-0.5
3,057,765	-				-0.0
3,057,795	+				+0.0
3,057,796	-				+0.3
3,057,809	+				-1.4
3,057,810	-				+0.2
3,057,822	+				+0.9
3,057,822	+				+0.3
3,057,872	-				-0.6
3,057,890	+				+1.0
3,057,890	+				-1.0
3,057,891	-				-0.2
3,057,891	-				-0.9
3,057,900	+				-0.7
3,057,900	+				+0.6
3,057,900	+				+0.0
3,057,900	+				-1.8
3,057,901	-				+0.7
3,057,901	-				-0.7
3,057,901	-				-0.4
3,057,984	+				-0.2
3,057,985	-				+0.5
3,057,985	-				-0.8
3,057,985	-				+0.9
3,057,985	-				-1.0
3,057,986	+				+0.3
3,057,987	-				-1.9
3,057,987	-				-2.2
3,057,987	-				-1.5
3,057,987	-				+0.5
3,057,987	-				-1.0
3,057,998	-				+0.4
3,058,037	+				+1.6
3,058,037	+				-0.8
3,058,037	+				-0.8
3,058,037	+				+0.5
3,058,037	+				+0.4
3,058,037	+				-0.1
3,058,037	+				-0.6
3,058,037	+				+0.0
3,058,038	-				+0.3
3,058,038	-				-0.4
3,058,038	-				+1.3
3,058,038	-				-1.2
3,058,038	-				-0.8
3,058,038	-				-0.5
3,058,038	-				+0.3
3,058,038	-				+0.1
3,058,038	-				+0.0
3,058,038	-				+2.9
3,058,038	-				-1.8
3,058,038	-				+2.3
3,058,038	-				-0.7
3,058,038	-				-1.7
3,058,038	-				+1.3
3,058,040	-				+0.3
3,058,040	-				-0.1
3,058,040	-				-0.1
3,058,040	-				+0.8
3,058,041	+				-3.7
3,058,041	+				-0.5
3,058,041	+				+0.2
3,058,041	+				-0.8
3,058,041	+				+3.3
3,058,041	+				+0.5
3,058,042	-				+0.3
3,058,042	-				+1.1
3,058,042	-				+0.1
3,058,042	-				+0.2
3,058,042	-				-2.5
3,058,042	-				-0.7
3,058,042	-				-0.3
3,058,042	-				-1.2
3,058,042	-				+0.3
3,058,042	-				+0.0
3,058,066	+		Sama_2549	0.12	+1.6
3,058,066	+		Sama_2549	0.12	+1.3
3,058,112	+		Sama_2549	0.19	+0.3
3,058,112	+		Sama_2549	0.19	-1.2
3,058,112	+		Sama_2549	0.19	-0.2
3,058,112	+		Sama_2549	0.19	+0.3
3,058,112	+		Sama_2549	0.19	-0.7
3,058,112	+		Sama_2549	0.19	+0.3
3,058,112	+		Sama_2549	0.19	-0.5
3,058,112	+		Sama_2549	0.19	-0.7
3,058,112	+		Sama_2549	0.19	-0.4
3,058,112	+		Sama_2549	0.19	-0.7
3,058,112	+		Sama_2549	0.19	-0.5
3,058,112	+		Sama_2549	0.19	+1.5
3,058,112	+		Sama_2549	0.19	+0.3
3,058,113	-		Sama_2549	0.19	-0.8
3,058,113	-		Sama_2549	0.19	+0.0
3,058,113	-		Sama_2549	0.19	-1.5
3,058,113	-		Sama_2549	0.19	-1.9
3,058,113	-		Sama_2549	0.19	-1.2
3,058,113	-		Sama_2549	0.19	-1.9
3,058,113	-		Sama_2549	0.19	+1.8
3,058,113	-		Sama_2549	0.19	+0.9
3,058,113	-		Sama_2549	0.19	-2.2
3,058,113	-		Sama_2549	0.19	-2.1
3,058,113	-		Sama_2549	0.19	+0.4
3,058,113	-		Sama_2549	0.19	-0.2
3,058,113	-		Sama_2549	0.19	-1.8
3,058,113	-		Sama_2549	0.19	+0.6
3,058,123	-		Sama_2549	0.21	+0.1
3,058,157	+		Sama_2549	0.26	+1.1
3,058,196	+		Sama_2549	0.31	-0.2
3,058,196	+		Sama_2549	0.31	+1.8
3,058,196	+		Sama_2549	0.31	-1.6
3,058,196	+		Sama_2549	0.31	-0.2
3,058,196	+		Sama_2549	0.31	-0.5
3,058,196	+		Sama_2549	0.31	+0.0
3,058,196	+		Sama_2549	0.31	-0.4
3,058,196	+		Sama_2549	0.31	+1.2
3,058,196	+		Sama_2549	0.31	-0.7
3,058,196	+		Sama_2549	0.31	-1.1
3,058,197	-		Sama_2549	0.31	-0.1
3,058,197	-		Sama_2549	0.31	-1.0
3,058,197	-		Sama_2549	0.31	+0.3
3,058,197	-		Sama_2549	0.31	-0.2
3,058,197	-		Sama_2549	0.31	+0.0
3,058,197	-		Sama_2549	0.31	-0.2
3,058,197	-		Sama_2549	0.31	-0.5
3,058,197	-		Sama_2549	0.31	-1.0
3,058,197	-		Sama_2549	0.31	-2.1
3,058,197	-		Sama_2549	0.31	+0.6
3,058,197	-		Sama_2549	0.31	-0.7
3,058,197	-		Sama_2549	0.31	-1.4
3,058,197	-		Sama_2549	0.31	+1.9
3,058,197	-		Sama_2549	0.31	-1.7
3,058,197	-		Sama_2549	0.31	+0.8
3,058,197	-		Sama_2549	0.31	-0.7
3,058,197	-		Sama_2549	0.31	+2.3
3,058,197	-		Sama_2549	0.31	+0.1
3,058,197	-		Sama_2549	0.31	-1.7
3,058,197	-		Sama_2549	0.31	-0.1
3,058,200	+		Sama_2549	0.32	+0.5
3,058,200	+		Sama_2549	0.32	-0.7
3,058,201	-		Sama_2549	0.32	-0.6
3,058,201	-		Sama_2549	0.32	-0.2
3,058,201	-		Sama_2549	0.32	+2.3
3,058,241	+		Sama_2549	0.38	+1.0
3,058,265	-		Sama_2549	0.41	-0.8
3,058,267	-		Sama_2549	0.42	+1.5
3,058,267	-		Sama_2549	0.42	+0.8
3,058,331	+		Sama_2549	0.51	-1.2
3,058,332	-		Sama_2549	0.51	-0.9
3,058,344	+		Sama_2549	0.53	+0.7
3,058,442	-		Sama_2549	0.67	+0.8
3,058,459	+		Sama_2549	0.70	-0.2
3,058,459	+		Sama_2549	0.70	-1.1
3,058,460	-		Sama_2549	0.70	-1.5
3,058,460	-		Sama_2549	0.70	+0.5
3,058,460	-		Sama_2549	0.70	+1.7
3,058,461	+		Sama_2549	0.70	+1.3
3,058,461	+		Sama_2549	0.70	+0.5
3,058,461	+		Sama_2549	0.70	+1.3
3,058,461	+		Sama_2549	0.70	-0.7
3,058,461	+		Sama_2549	0.70	+1.6
3,058,462	-		Sama_2549	0.70	-1.6
3,058,462	-		Sama_2549	0.70	-0.1
3,058,462	-		Sama_2549	0.70	+0.2
3,058,462	-		Sama_2549	0.70	-1.0
3,058,462	-		Sama_2549	0.70	-0.1
3,058,462	-		Sama_2549	0.70	-1.2
3,058,462	-		Sama_2549	0.70	-1.0
3,058,462	-		Sama_2549	0.70	-0.2
3,058,462	-		Sama_2549	0.70	-0.5
3,058,462	-		Sama_2549	0.70	-2.1
3,058,462	-		Sama_2549	0.70	-1.1
3,058,462	-		Sama_2549	0.70	+0.5
3,058,462	-		Sama_2549	0.70	-1.0
3,058,462	-		Sama_2549	0.70	+0.2
3,058,462	-		Sama_2549	0.70	-2.2
3,058,462	-		Sama_2549	0.70	-0.7
3,058,462	-		Sama_2549	0.70	+0.3
3,058,462	-		Sama_2549	0.70	-0.1
3,058,462	-		Sama_2549	0.70	-2.2
3,058,462	-		Sama_2549	0.70	+0.3
3,058,486	+		Sama_2549	0.74	-1.1
3,058,487	-		Sama_2549	0.74	+0.1
3,058,495	+		Sama_2549	0.75	+1.1
3,058,495	+		Sama_2549	0.75	+0.0
3,058,495	+		Sama_2549	0.75	+0.0
3,058,495	+		Sama_2549	0.75	-1.0
3,058,544	+		Sama_2549	0.82	-0.5
3,058,544	+		Sama_2549	0.82	-1.0
3,058,570	+		Sama_2549	0.86	+0.5
3,058,570	+		Sama_2549	0.86	+1.3
3,058,571	-		Sama_2549	0.86	+0.2
3,058,572	+		Sama_2549	0.86	-1.8
3,058,573	-		Sama_2549	0.87	+2.3
3,058,573	-		Sama_2549	0.87	-1.0
3,058,573	-		Sama_2549	0.87	+0.0
3,058,573	-		Sama_2549	0.87	+0.5
3,058,580	+		Sama_2549	0.88	+0.0
3,058,580	+		Sama_2549	0.88	+0.8
3,058,580	+		Sama_2549	0.88	-1.5
3,058,581	-		Sama_2549	0.88	-0.8
3,058,581	-		Sama_2549	0.88	+0.3
3,058,602	+				-1.7
3,058,603	-				+1.2
3,058,603	-				-1.5
3,058,619	+				-0.2
3,058,633	+				-0.2
3,058,787	+		Sama_2550	0.11	-2.2
3,058,787	+		Sama_2550	0.11	-0.6
3,058,787	+		Sama_2550	0.11	+1.3
3,058,852	+		Sama_2550	0.18	+0.0
3,058,852	+		Sama_2550	0.18	-0.4
3,058,853	-		Sama_2550	0.18	-1.3