Strain Fitness in Shewanella amazonensis SB2B around Sama_2197

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
2,654,344	+		Sama_2195	0.34	-1.1
2,654,345	-		Sama_2195	0.34	-1.4
2,654,345	-		Sama_2195	0.34	-0.6
2,654,362	+		Sama_2195	0.37	-0.4
2,654,363	-		Sama_2195	0.37	-0.6
2,654,363	-		Sama_2195	0.37	-0.6
2,654,375	-		Sama_2195	0.39	+0.4
2,654,412	+		Sama_2195	0.45	-1.3
2,654,413	-		Sama_2195	0.46	+1.4
2,654,413	-		Sama_2195	0.46	+0.0
2,654,432	+		Sama_2195	0.49	+0.6
2,654,433	-		Sama_2195	0.49	+1.2
2,654,451	+		Sama_2195	0.52	-2.3
2,654,466	-		Sama_2195	0.55	+0.2
2,654,466	-		Sama_2195	0.55	-0.2
2,654,538	+		Sama_2195	0.67	-0.8
2,654,538	+		Sama_2195	0.67	+1.0
2,654,538	+		Sama_2195	0.67	+0.8
2,654,692	-				-1.3
2,654,727	+				-1.0
2,654,728	-				+1.2
2,654,728	-				-1.0
2,654,728	-				+0.6
2,654,734	-				-0.8
2,654,734	-				+1.0
2,654,763	-				+1.2
2,654,795	-		Sama_2196	0.12	-0.2
2,654,798	+		Sama_2196	0.12	-1.0
2,654,798	+		Sama_2196	0.12	+0.4
2,654,798	+		Sama_2196	0.12	+0.4
2,654,799	-		Sama_2196	0.12	+1.2
2,654,827	-		Sama_2196	0.18	+0.6
2,654,840	+		Sama_2196	0.20	+0.4
2,654,840	+		Sama_2196	0.20	+0.6
2,654,840	+		Sama_2196	0.20	-1.0
2,654,919	-		Sama_2196	0.36	+0.2
2,654,992	+		Sama_2196	0.50	-1.6
2,654,993	-		Sama_2196	0.50	+0.4
2,655,041	+		Sama_2196	0.59	+0.3
2,655,042	-		Sama_2196	0.60	+0.4
2,655,053	-		Sama_2196	0.62	-1.0
2,655,053	-		Sama_2196	0.62	+2.2
2,655,110	+		Sama_2196	0.73	-0.5
2,655,110	+		Sama_2196	0.73	+0.3
2,655,110	+		Sama_2196	0.73	-1.9
2,655,110	+		Sama_2196	0.73	-1.3
2,655,110	+		Sama_2196	0.73	+1.8
2,655,110	+		Sama_2196	0.73	-1.1
2,655,111	-		Sama_2196	0.73	-1.9
2,655,147	+		Sama_2196	0.80	+0.6
2,655,147	+		Sama_2196	0.80	-0.6
2,655,148	-		Sama_2196	0.80	-0.8
2,655,148	-		Sama_2196	0.80	-1.0
2,655,148	-		Sama_2196	0.80	-0.2
2,655,148	-		Sama_2196	0.80	-0.6
2,655,148	-		Sama_2196	0.80	+1.5
2,655,148	-		Sama_2196	0.80	+0.4
2,655,148	-		Sama_2196	0.80	+1.2
2,655,263	+				+0.8
2,655,263	+				-2.5
2,655,361	+				+0.8
2,655,361	+				-0.9
2,655,361	+				-0.2
2,655,362	-				-0.4
2,655,362	-				-1.4
2,655,362	-				-0.8
2,655,391	-		Sama_2197	0.12	-1.6
2,655,406	+		Sama_2197	0.14	-0.8
2,655,450	+		Sama_2197	0.21	-0.4
2,655,482	+		Sama_2197	0.25	+1.4
2,655,482	+		Sama_2197	0.25	-2.4
2,655,483	-		Sama_2197	0.26	-2.2
2,655,483	-		Sama_2197	0.26	-0.3
2,655,595	+		Sama_2197	0.42	-0.9
2,655,595	+		Sama_2197	0.42	-2.2
2,655,600	-		Sama_2197	0.43	-0.8
2,655,642	-		Sama_2197	0.49	-1.2
2,655,798	-		Sama_2197	0.72	-1.1
2,655,803	+		Sama_2197	0.73	+0.4
2,655,804	-		Sama_2197	0.73	-0.7
2,655,807	+		Sama_2197	0.74	-1.4
2,655,807	+		Sama_2197	0.74	-2.4
2,655,807	+		Sama_2197	0.74	-0.8
2,655,807	+		Sama_2197	0.74	+1.4
2,655,807	+		Sama_2197	0.74	-1.0
2,655,807	+		Sama_2197	0.74	+0.6
2,655,807	+		Sama_2197	0.74	-0.7
2,655,807	+		Sama_2197	0.74	-0.8
2,655,807	+		Sama_2197	0.74	+0.1
2,655,807	+		Sama_2197	0.74	-0.2
2,655,807	+		Sama_2197	0.74	+2.8
2,655,807	+		Sama_2197	0.74	+0.3
2,655,807	+		Sama_2197	0.74	+0.4
2,655,807	+		Sama_2197	0.74	-0.6
2,655,807	+		Sama_2197	0.74	-0.2
2,655,807	+		Sama_2197	0.74	+0.8
2,655,807	+		Sama_2197	0.74	+0.2
2,655,807	+		Sama_2197	0.74	-0.2
2,655,807	+		Sama_2197	0.74	+0.2
2,655,807	+		Sama_2197	0.74	-0.6
2,655,807	+		Sama_2197	0.74	+0.1
2,655,807	+		Sama_2197	0.74	-0.7
2,655,808	-		Sama_2197	0.74	+0.2
2,655,808	-		Sama_2197	0.74	-1.1
2,655,808	-		Sama_2197	0.74	+0.6
2,655,808	-		Sama_2197	0.74	-1.0
2,655,808	-		Sama_2197	0.74	+1.4
2,655,808	-		Sama_2197	0.74	-1.5
2,655,808	-		Sama_2197	0.74	-0.4
2,655,808	-		Sama_2197	0.74	-1.7
2,655,808	-		Sama_2197	0.74	+0.2
2,655,808	-		Sama_2197	0.74	+0.2
2,655,808	-		Sama_2197	0.74	-0.7
2,655,847	+		Sama_2197	0.80	+0.8
2,655,847	+		Sama_2197	0.80	-1.0
2,655,848	-		Sama_2197	0.80	+0.0
2,655,930	+				+0.6
2,655,931	-				-0.6
2,655,982	+				+0.8
2,655,992	+				-1.0
2,656,042	+				-0.8
2,656,043	-				+0.6
2,656,143	-		Sama_2198	0.33	+0.8
2,656,228	+		Sama_2198	0.53	+1.4
2,656,229	-		Sama_2198	0.54	-0.0
2,656,229	-		Sama_2198	0.54	-0.3
2,656,241	+		Sama_2198	0.57	+1.6
2,656,242	-		Sama_2198	0.57	+0.5
2,656,290	+		Sama_2198	0.68	+1.7
2,656,290	+		Sama_2198	0.68	-0.2
2,656,291	-		Sama_2198	0.69	+1.7
2,656,291	-		Sama_2198	0.69	-0.9
2,656,291	-		Sama_2198	0.69	+0.1
2,656,291	-		Sama_2198	0.69	+0.2
2,656,291	-		Sama_2198	0.69	-0.7
2,656,298	+		Sama_2198	0.70	+0.4
2,656,299	-		Sama_2198	0.71	+0.8
2,656,364	+		Sama_2198	0.86	-1.2
2,656,365	-		Sama_2198	0.86	-1.3
2,656,398	+				+0.6
2,656,398	+				+0.2
2,656,398	+				-2.0
2,656,398	+				-0.6
2,656,398	+				-0.9
2,656,399	-				+0.2
2,656,399	-				-0.9
2,656,399	-				+0.4
2,656,532	+				+2.2
2,656,532	+				-0.6
2,656,533	-				-1.2
2,656,563	-				-0.0
2,656,570	-				+0.2
2,656,595	+				-0.8
2,656,595	+				-0.4
2,656,596	-				+1.8
2,656,599	+				-0.5
2,656,618	+				+0.8
2,656,640	+				-0.3
2,656,640	+				-0.7
2,656,640	+				-0.7
2,656,654	+				+0.9
2,656,654	+				+2.5
2,656,655	-				-1.3
2,656,686	+				+1.6
2,656,704	+				-1.0
2,656,705	-				-0.6
2,656,742	-				+0.1
2,656,742	-				-1.7
2,656,765	+				-0.9
2,656,765	+				+0.6
2,656,774	+				-0.1
2,656,784	+				+1.6
2,656,785	-				-1.4
2,656,848	+		Sama_2199	0.17	+0.8
2,656,954	+		Sama_2199	0.38	-1.0
2,656,954	+		Sama_2199	0.38	-0.8
2,656,954	+		Sama_2199	0.38	-0.4
2,656,954	+		Sama_2199	0.38	-0.6
2,656,954	+		Sama_2199	0.38	+1.2
2,656,954	+		Sama_2199	0.38	+0.8
2,656,955	-		Sama_2199	0.38	+1.6
2,656,955	-		Sama_2199	0.38	-0.5
2,656,978	+		Sama_2199	0.42	-1.0