Strain Fitness in Shewanella amazonensis SB2B around Sama_0995

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
1,205,778	-		Sama_0994	0.56	-1.4
1,205,778	-		Sama_0994	0.56	+0.1
1,205,795	-		Sama_0994	0.57	+0.1
1,205,795	-		Sama_0994	0.57	-2.3
1,205,795	-		Sama_0994	0.57	-1.0
1,205,832	+		Sama_0994	0.60	-1.1
1,205,832	+		Sama_0994	0.60	+0.9
1,205,832	+		Sama_0994	0.60	-0.4
1,205,833	-		Sama_0994	0.60	+0.3
1,205,833	-		Sama_0994	0.60	-1.4
1,205,833	-		Sama_0994	0.60	-0.7
1,205,863	-		Sama_0994	0.62	-1.3
1,205,943	+		Sama_0994	0.68	-2.0
1,205,944	-		Sama_0994	0.68	-0.1
1,205,956	-		Sama_0994	0.69	-1.0
1,206,018	+		Sama_0994	0.73	-1.1
1,206,018	+		Sama_0994	0.73	+0.8
1,206,019	-		Sama_0994	0.73	+0.6
1,206,075	+		Sama_0994	0.77	-0.5
1,206,075	+		Sama_0994	0.77	+0.2
1,206,075	+		Sama_0994	0.77	-0.8
1,206,075	+		Sama_0994	0.77	-0.7
1,206,075	+		Sama_0994	0.77	+0.0
1,206,075	+		Sama_0994	0.77	+0.3
1,206,075	+		Sama_0994	0.77	-0.5
1,206,075	+		Sama_0994	0.77	-0.8
1,206,075	+		Sama_0994	0.77	-0.0
1,206,075	+		Sama_0994	0.77	+0.0
1,206,075	+		Sama_0994	0.77	-1.4
1,206,076	-		Sama_0994	0.77	-0.8
1,206,076	-		Sama_0994	0.77	-0.2
1,206,076	-		Sama_0994	0.77	-0.7
1,206,076	-		Sama_0994	0.77	+0.2
1,206,076	-		Sama_0994	0.77	-0.2
1,206,076	-		Sama_0994	0.77	-0.7
1,206,106	-		Sama_0994	0.80	-1.6
1,206,138	+		Sama_0994	0.82	-0.3
1,206,206	-		Sama_0994	0.87	-1.5
1,206,206	-		Sama_0994	0.87	+0.4
1,206,206	-		Sama_0994	0.87	-1.4
1,206,206	-		Sama_0994	0.87	-1.0
1,206,219	+		Sama_0994	0.88	+0.3
1,206,220	-		Sama_0994	0.88	-1.1
1,206,220	-		Sama_0994	0.88	-1.4
1,206,220	-		Sama_0994	0.88	-1.5
1,206,249	-				-1.0
1,206,253	-				-0.2
1,206,284	+				+0.3
1,206,284	+				-0.8
1,206,284	+				+2.1
1,206,284	+				-0.6
1,206,300	+				-0.5
1,206,300	+				+1.3
1,206,301	-				-0.6
1,206,316	+				-0.5
1,206,317	-				-3.1
1,206,333	+				+0.2
1,206,334	-				-0.7
1,206,395	+				-2.2
1,206,395	+				-1.2
1,206,407	-				-0.2
1,206,409	+				-0.1
1,206,450	+				-0.6
1,206,450	+				-0.5
1,206,450	+				-0.9
1,206,508	+				-2.2
1,206,516	-				+0.3
1,206,516	-				-0.5
1,206,516	-				+0.0
1,206,516	-				+1.1
1,206,530	-				-0.2
1,206,530	-				-1.1
1,206,549	-				-1.7
1,206,573	+				+0.1
1,206,574	-				+0.2
1,206,574	-				+0.3
1,206,600	+				+0.8
1,206,601	-				-0.8
1,206,605	+				+2.3
1,206,606	-				-0.1
1,206,606	-				-0.2
1,206,606	-				-0.0
1,206,615	+				-0.7
1,206,616	-				+2.0
1,206,616	-				+0.8
1,206,634	+				+0.3
1,206,635	-				+0.3
1,206,635	-				+0.3
1,206,643	-				+0.7
1,206,738	-				+1.1
1,206,749	+				+0.9
1,206,749	+				-1.2
1,206,749	+				-2.3
1,206,749	+				-1.7
1,206,750	-				+1.5
1,206,750	-				+0.0
1,206,750	-				-0.5
1,206,756	+				+0.2
1,206,756	+				-1.9
1,206,756	+				-2.2
1,206,757	-				-0.6
1,206,757	-				+0.0
1,206,757	-				-0.5
1,206,760	+				-0.2
1,206,761	-				-0.1
1,206,761	-				+0.2
1,206,761	-				+0.2
1,206,765	+				-1.9
1,206,971	+		Sama_0995	0.13	+0.9
1,206,972	-		Sama_0995	0.13	-0.2
1,206,972	-		Sama_0995	0.13	-0.2
1,206,985	+		Sama_0995	0.14	+0.1
1,206,986	-		Sama_0995	0.14	-1.7
1,206,986	-		Sama_0995	0.14	+0.3
1,206,986	-		Sama_0995	0.14	+0.3
1,206,986	-		Sama_0995	0.14	-0.7
1,206,986	-		Sama_0995	0.14	-1.2
1,206,986	-		Sama_0995	0.14	-0.8
1,207,230	-		Sama_0995	0.30	+0.2
1,207,257	-		Sama_0995	0.32	+0.8
1,207,298	+		Sama_0995	0.34	-0.5
1,207,454	+		Sama_0995	0.44	+0.8
1,207,571	+		Sama_0995	0.52	-1.0
1,207,651	+		Sama_0995	0.57	-0.1
1,207,651	+		Sama_0995	0.57	-2.3
1,207,652	-		Sama_0995	0.57	+1.7
1,207,665	+		Sama_0995	0.58	-0.1
1,207,666	-		Sama_0995	0.58	+2.1
1,207,674	+		Sama_0995	0.59	+0.5
1,207,796	+		Sama_0995	0.66	-0.7
1,207,823	+		Sama_0995	0.68	-0.2
1,207,823	+		Sama_0995	0.68	-0.8
1,207,823	+		Sama_0995	0.68	+0.4
1,207,823	+		Sama_0995	0.68	+0.8
1,207,823	+		Sama_0995	0.68	+0.1
1,207,823	+		Sama_0995	0.68	-0.4
1,207,823	+		Sama_0995	0.68	-0.2
1,207,823	+		Sama_0995	0.68	-0.7
1,207,823	+		Sama_0995	0.68	+0.8
1,207,823	+		Sama_0995	0.68	+0.3
1,207,823	+		Sama_0995	0.68	+0.1
1,207,824	-		Sama_0995	0.68	-1.0
1,207,824	-		Sama_0995	0.68	-1.0
1,207,824	-		Sama_0995	0.68	+0.8
1,207,824	-		Sama_0995	0.68	-0.4
1,207,824	-		Sama_0995	0.68	+0.2
1,207,824	-		Sama_0995	0.68	-1.0
1,207,824	-		Sama_0995	0.68	-0.2
1,207,824	-		Sama_0995	0.68	+0.3
1,207,824	-		Sama_0995	0.68	-0.4
1,207,824	-		Sama_0995	0.68	+1.3
1,207,824	-		Sama_0995	0.68	-0.5
1,207,824	-		Sama_0995	0.68	+0.6
1,207,824	-		Sama_0995	0.68	-1.0
1,207,824	-		Sama_0995	0.68	-2.2
1,207,824	-		Sama_0995	0.68	+0.6
1,207,824	-		Sama_0995	0.68	-0.1
1,207,824	-		Sama_0995	0.68	-0.4
1,207,824	-		Sama_0995	0.68	+0.0
1,207,824	-		Sama_0995	0.68	+0.4
1,207,825	+		Sama_0995	0.68	-2.1
1,207,825	+		Sama_0995	0.68	-1.0
1,207,825	+		Sama_0995	0.68	+0.3
1,207,825	+		Sama_0995	0.68	+0.8
1,207,825	+		Sama_0995	0.68	-0.2
1,207,825	+		Sama_0995	0.68	+0.9
1,207,825	+		Sama_0995	0.68	-2.3
1,207,825	+		Sama_0995	0.68	+0.2
1,207,825	+		Sama_0995	0.68	-0.7
1,207,825	+		Sama_0995	0.68	+0.3
1,207,825	+		Sama_0995	0.68	-0.5
1,207,825	+		Sama_0995	0.68	-0.7
1,207,825	+		Sama_0995	0.68	+0.0
1,207,826	-		Sama_0995	0.68	-0.7
1,207,826	-		Sama_0995	0.68	-0.1
1,207,826	-		Sama_0995	0.68	+0.5
1,207,826	-		Sama_0995	0.68	-1.8
1,207,826	-		Sama_0995	0.68	-0.6
1,207,826	-		Sama_0995	0.68	-0.6
1,207,826	-		Sama_0995	0.68	-0.9
1,207,826	-		Sama_0995	0.68	+0.4
1,207,829	+		Sama_0995	0.69	-0.4
1,207,829	+		Sama_0995	0.69	+0.3
1,207,829	+		Sama_0995	0.69	-0.4
1,207,829	+		Sama_0995	0.69	+1.1
1,207,830	-		Sama_0995	0.69	-2.0
1,207,830	-		Sama_0995	0.69	-1.4
1,207,830	-		Sama_0995	0.69	-1.5
1,207,830	-		Sama_0995	0.69	-0.2
1,207,858	+		Sama_0995	0.70	+1.0
1,207,858	+		Sama_0995	0.70	-1.3
1,207,859	-		Sama_0995	0.70	-1.0
1,207,920	+		Sama_0995	0.74	-0.4
1,207,920	+		Sama_0995	0.74	-1.2
1,207,920	+		Sama_0995	0.74	-0.1
1,207,924	+		Sama_0995	0.75	-2.2
1,207,924	+		Sama_0995	0.75	-1.0
1,207,925	-		Sama_0995	0.75	-0.4
1,207,925	-		Sama_0995	0.75	-0.5
1,208,031	+		Sama_0995	0.82	-0.5
1,208,032	-		Sama_0995	0.82	-1.1
1,208,146	+		Sama_0995	0.89	-0.4
1,208,146	+		Sama_0995	0.89	+1.0
1,208,147	-		Sama_0995	0.89	+1.5
1,208,147	-		Sama_0995	0.89	+0.1
1,208,147	-		Sama_0995	0.89	-1.2
1,208,147	-		Sama_0995	0.89	+0.0
1,208,147	-		Sama_0995	0.89	+2.3
1,208,179	+				+0.2
1,208,179	+				+0.5
1,208,179	+				-1.1
1,208,179	+				-1.2
1,208,179	+				+0.8
1,208,180	-				-1.2
1,208,180	-				+0.3
1,208,180	-				-1.6
1,208,181	+				+1.3
1,208,189	+				-0.6
1,208,189	+				-0.2
1,208,189	+				+2.9
1,208,190	-				-0.2
1,208,197	+				+0.0
1,208,214	+				-0.2
1,208,214	+				+0.5
1,208,215	-				-0.3
1,208,215	-				-0.1
1,208,215	-				+0.2
1,208,215	-				+0.8
1,208,215	-				-0.8
1,208,290	+				+0.3
1,208,291	-				-1.7
1,208,317	+				-1.5
1,208,317	+				-0.2
1,208,317	+				+1.0
1,208,317	+				+1.0
1,208,318	-				+0.0
1,208,318	-				-0.1
1,208,321	+				-0.9
1,208,321	+				+0.8
1,208,321	+				+0.0
1,208,322	-				-0.5
1,208,343	+				-1.4
1,208,343	+				+0.3
1,208,344	-				-0.2
1,208,346	+				-0.3
1,208,346	+				-0.7
1,208,347	-				+0.0
1,208,372	+				+0.0
1,208,372	+				-1.0
1,208,372	+				+0.3
1,208,373	-				-0.6
1,208,382	+				+0.3
1,208,405	+				-0.5
1,208,415	+				+0.2
1,208,419	+				+0.5
1,208,425	+				-0.6
1,208,425	+				-1.2
1,208,425	+				+0.5
1,208,426	-				+0.1
1,208,426	-				-0.2
1,208,426	-				+0.0
1,208,426	-				+2.1
1,208,429	-				-0.7
1,208,439	+				-1.0
1,208,449	+				+1.4
1,208,449	+				-0.1
1,208,449	+				+0.3
1,208,449	+				+1.8
1,208,449	+				+0.1
1,208,449	+				-1.7
1,208,449	+				+0.5
1,208,449	+				+0.0
1,208,450	-				+0.3
1,208,450	-				+0.9
1,208,450	-				-1.0
1,208,484	+				+0.6
1,208,502	+				-1.2
1,208,503	-				-1.1
1,208,503	-				-0.8
1,208,503	-				-0.4
1,208,506	-				+0.0
1,208,513	-				-1.0
1,208,518	+				-0.2
1,208,518	+				-1.1
1,208,518	+				-0.1
1,208,524	+				+0.2
1,208,524	+				-0.8
1,208,525	-				-0.7
1,208,566	+				+1.1
1,208,567	-				-0.7
1,208,580	+				-2.0
1,208,580	+				-0.1
1,208,587	-				-0.4
1,208,591	+				-0.2
1,208,591	+				+1.1
1,208,591	+				-0.7
1,208,610	-				+0.8
1,208,610	-				+0.3
1,208,691	-				+0.3
1,208,725	-		Sama_0996	0.13	+1.3
1,208,725	-		Sama_0996	0.13	+0.6
1,208,782	-		Sama_0996	0.21	-2.2
1,208,830	-		Sama_0996	0.28	-0.5
1,208,833	+		Sama_0996	0.28	-1.5
1,208,833	+		Sama_0996	0.28	-0.4
1,208,833	+		Sama_0996	0.28	-1.4
1,208,834	-		Sama_0996	0.28	+0.9
1,208,834	-		Sama_0996	0.28	-1.6
1,208,834	-		Sama_0996	0.28	-1.2
1,208,834	-		Sama_0996	0.28	+0.3
1,208,834	-		Sama_0996	0.28	-1.0
1,208,834	-		Sama_0996	0.28	-0.6
1,208,834	-		Sama_0996	0.28	+0.3
1,208,834	-		Sama_0996	0.28	-0.7
1,208,889	-		Sama_0996	0.36	-0.8
1,208,922	+		Sama_0996	0.41	-2.7
1,208,923	-		Sama_0996	0.41	+0.3
1,208,923	-		Sama_0996	0.41	-0.7
1,208,948	+		Sama_0996	0.44	-0.7
1,208,949	-		Sama_0996	0.45	-0.5
1,208,949	-		Sama_0996	0.45	-1.4
1,209,013	+		Sama_0996	0.54	-1.2
1,209,013	+		Sama_0996	0.54	-0.5
1,209,013	+		Sama_0996	0.54	+0.3
1,209,014	-		Sama_0996	0.54	+0.9
1,209,076	+		Sama_0996	0.63	-0.3
1,209,076	+		Sama_0996	0.63	+0.2
1,209,076	+		Sama_0996	0.63	-1.6
1,209,085	+		Sama_0996	0.64	+0.0
1,209,085	+		Sama_0996	0.64	-0.3
1,209,085	+		Sama_0996	0.64	-2.1
1,209,086	-		Sama_0996	0.64	+0.8
1,209,220	+		Sama_0996	0.83	+1.8
1,209,220	+		Sama_0996	0.83	+0.8
1,209,221	-		Sama_0996	0.83	+0.8
1,209,221	-		Sama_0996	0.83	-2.7
1,209,221	-		Sama_0996	0.83	+0.1
1,209,221	-		Sama_0996	0.83	+1.9
1,209,232	+		Sama_0996	0.85	+2.3
1,209,241	+		Sama_0996	0.86	-1.2
1,209,284	+				-1.7
1,209,284	+				-2.5