Strain Fitness in Shewanella amazonensis SB2B around Sama_0850

Experiment: sodium fluoride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 50 mM
1,036,299	+		Sama_0849	0.39	+0.9
1,036,302	+		Sama_0849	0.40	+1.2
1,036,302	+		Sama_0849	0.40	-0.9
1,036,302	+		Sama_0849	0.40	+0.0
1,036,302	+		Sama_0849	0.40	-1.4
1,036,302	+		Sama_0849	0.40	+0.7
1,036,303	-		Sama_0849	0.40	+1.0
1,036,303	-		Sama_0849	0.40	-0.2
1,036,306	+		Sama_0849	0.40	-0.4
1,036,306	+		Sama_0849	0.40	-0.9
1,036,306	+		Sama_0849	0.40	-0.2
1,036,317	+		Sama_0849	0.41	-0.2
1,036,333	-		Sama_0849	0.42	-0.7
1,036,333	-		Sama_0849	0.42	-0.2
1,036,352	-		Sama_0849	0.43	+1.4
1,036,401	+		Sama_0849	0.47	-0.2
1,036,401	+		Sama_0849	0.47	-0.0
1,036,402	-		Sama_0849	0.47	+1.7
1,036,402	-		Sama_0849	0.47	-1.4
1,036,429	+		Sama_0849	0.49	-0.6
1,036,429	+		Sama_0849	0.49	+0.4
1,036,430	-		Sama_0849	0.49	-0.4
1,036,507	+		Sama_0849	0.54	+1.4
1,036,507	+		Sama_0849	0.54	-0.6
1,036,507	+		Sama_0849	0.54	-1.4
1,036,589	+		Sama_0849	0.60	+0.3
1,036,590	-		Sama_0849	0.60	+0.1
1,036,590	-		Sama_0849	0.60	-0.7
1,036,590	-		Sama_0849	0.60	-1.6
1,036,829	+		Sama_0849	0.78	+0.4
1,036,829	+		Sama_0849	0.78	-0.7
1,036,844	+		Sama_0849	0.79	-1.4
1,036,922	+		Sama_0849	0.84	-1.4
1,036,922	+		Sama_0849	0.84	-1.9
1,036,922	+		Sama_0849	0.84	+1.8
1,036,923	-		Sama_0849	0.84	+1.1
1,036,923	-		Sama_0849	0.84	+0.8
1,036,928	+		Sama_0849	0.85	-0.7
1,036,928	+		Sama_0849	0.85	-0.3
1,036,928	+		Sama_0849	0.85	+1.8
1,036,928	+		Sama_0849	0.85	+2.8
1,036,928	+		Sama_0849	0.85	-0.1
1,036,928	+		Sama_0849	0.85	-1.2
1,036,928	+		Sama_0849	0.85	+1.1
1,036,928	+		Sama_0849	0.85	+0.4
1,036,928	+		Sama_0849	0.85	+1.1
1,036,928	+		Sama_0849	0.85	-0.9
1,036,929	-		Sama_0849	0.85	+0.0
1,036,929	-		Sama_0849	0.85	-0.6
1,036,929	-		Sama_0849	0.85	-0.2
1,036,929	-		Sama_0849	0.85	+0.1
1,036,929	-		Sama_0849	0.85	-0.9
1,036,929	-		Sama_0849	0.85	-1.2
1,036,929	-		Sama_0849	0.85	-1.6
1,036,929	-		Sama_0849	0.85	-0.7
1,036,929	-		Sama_0849	0.85	-1.0
1,036,985	-		Sama_0849	0.89	+0.2
1,037,073	-				+0.4
1,037,125	+				-1.0
1,037,125	+				+1.4
1,037,125	+				+0.7
1,037,126	-				-1.4
1,037,129	-				+0.3
1,037,129	-				+1.7
1,037,182	+				+0.9
1,037,182	+				-0.4
1,037,182	+				+1.1
1,037,183	-				-1.0
1,037,183	-				+1.4
1,037,187	+				-0.9
1,037,187	+				-0.4
1,037,187	+				-1.4
1,037,187	+				-0.7
1,037,187	+				-0.5
1,037,188	-				+1.6
1,037,217	+				-0.3
1,037,217	+				+0.3
1,037,217	+				+0.8
1,037,217	+				+0.1
1,037,217	+				+0.6
1,037,222	+				-1.9
1,037,222	+				-0.7
1,037,222	+				+1.4
1,037,222	+				-0.4
1,037,222	+				-0.2
1,037,222	+				+1.1
1,037,222	+				+0.1
1,037,222	+				+0.3
1,037,222	+				+0.1
1,037,222	+				+1.0
1,038,466	+				-0.9
1,038,466	+				+1.3
1,038,466	+				-0.0
1,038,466	+				+0.8
1,038,466	+				+0.6
1,038,466	+				-1.4
1,038,467	-				-0.2
1,038,467	-				-1.0
1,038,470	-				+0.3
1,038,487	+				+0.4
1,038,487	+				-0.0
1,038,487	+				+0.2
1,038,488	-				+0.8
1,038,567	+				-0.1
1,038,567	+				+1.0
1,038,568	-				-1.5
1,038,578	+				-1.0
1,038,579	-				-1.2
1,038,579	-				-1.0
1,038,600	+				-0.1
1,038,601	-				-1.6
1,038,661	+		Sama_0851	0.20	-0.6
1,038,661	+		Sama_0851	0.20	-0.1
1,038,661	+		Sama_0851	0.20	-0.2
1,038,662	-		Sama_0851	0.20	+0.3
1,038,662	-		Sama_0851	0.20	-0.6
1,038,677	+		Sama_0851	0.23	-1.4
1,038,677	+		Sama_0851	0.23	+0.6
1,038,677	+		Sama_0851	0.23	-0.6
1,038,678	-		Sama_0851	0.24	-0.7
1,038,678	-		Sama_0851	0.24	-0.2
1,038,678	-		Sama_0851	0.24	-0.2
1,038,678	-		Sama_0851	0.24	-0.6
1,038,732	+		Sama_0851	0.35	+1.4
1,038,733	-		Sama_0851	0.35	-0.8
1,038,733	-		Sama_0851	0.35	-1.3
1,038,768	+		Sama_0851	0.43	-0.1
1,038,768	+		Sama_0851	0.43	-1.0
1,038,768	+		Sama_0851	0.43	-1.5
1,038,768	+		Sama_0851	0.43	+0.7
1,038,768	+		Sama_0851	0.43	+1.4
1,038,768	+		Sama_0851	0.43	-1.7
1,038,768	+		Sama_0851	0.43	-0.4
1,038,769	-		Sama_0851	0.43	-0.3
1,038,769	-		Sama_0851	0.43	+0.5
1,038,769	-		Sama_0851	0.43	+0.3
1,038,769	-		Sama_0851	0.43	+0.4
1,038,769	-		Sama_0851	0.43	-1.0
1,038,769	-		Sama_0851	0.43	-0.3
1,038,769	-		Sama_0851	0.43	-0.7
1,038,769	-		Sama_0851	0.43	+0.7
1,038,792	+		Sama_0851	0.48	+0.4
1,038,793	-		Sama_0851	0.48	+0.1
1,038,793	-		Sama_0851	0.48	+0.4
1,038,835	+		Sama_0851	0.57	+0.7
1,038,835	+		Sama_0851	0.57	+1.0
1,038,852	+		Sama_0851	0.60	+0.7
1,038,852	+		Sama_0851	0.60	-0.2
1,038,852	+		Sama_0851	0.60	-0.4
1,038,853	-		Sama_0851	0.61	+0.9
1,038,853	-		Sama_0851	0.61	-0.9
1,038,853	-		Sama_0851	0.61	+0.8
1,038,897	+		Sama_0851	0.70	-1.3
1,038,897	+		Sama_0851	0.70	-0.4
1,038,898	-		Sama_0851	0.70	-0.7
1,038,898	-		Sama_0851	0.70	+0.4
1,038,898	-		Sama_0851	0.70	+0.2
1,038,898	-		Sama_0851	0.70	-0.3
1,038,898	-		Sama_0851	0.70	+0.7
1,038,900	+		Sama_0851	0.70	+0.1
1,038,900	+		Sama_0851	0.70	+0.1
1,038,900	+		Sama_0851	0.70	+0.6
1,038,901	-		Sama_0851	0.71	+0.2
1,038,918	+		Sama_0851	0.74	+0.1
1,038,919	-		Sama_0851	0.74	+0.5
1,038,919	-		Sama_0851	0.74	-0.9
1,038,944	-		Sama_0851	0.80	+1.3
1,038,944	-		Sama_0851	0.80	-0.0
1,038,945	+		Sama_0851	0.80	+1.4
1,038,945	+		Sama_0851	0.80	+0.8
1,038,945	+		Sama_0851	0.80	-0.5
1,038,945	+		Sama_0851	0.80	-0.2
1,038,946	-		Sama_0851	0.80	-0.7
1,038,946	-		Sama_0851	0.80	-0.2
1,038,946	-		Sama_0851	0.80	-1.0
1,038,946	-		Sama_0851	0.80	-0.2
1,038,946	-		Sama_0851	0.80	-1.5
1,038,946	-		Sama_0851	0.80	+0.7
1,038,950	+		Sama_0851	0.81	+0.8
1,038,950	+		Sama_0851	0.81	-2.0
1,038,950	+		Sama_0851	0.81	+0.0
1,038,951	-		Sama_0851	0.81	-0.2
1,039,014	+				-1.1
1,039,014	+				+0.8
1,039,015	-				+1.4
1,039,022	+				-0.5
1,039,022	+				+0.1
1,039,130	-		Sama_0852	0.14	+0.1
1,039,163	+		Sama_0852	0.19	-0.7
1,039,163	+		Sama_0852	0.19	-0.4
1,039,164	-		Sama_0852	0.19	+0.3
1,039,164	-		Sama_0852	0.19	+0.3
1,039,164	-		Sama_0852	0.19	+1.8
1,039,164	-		Sama_0852	0.19	+0.3
1,039,164	-		Sama_0852	0.19	+0.2
1,039,180	+		Sama_0852	0.22	+1.8
1,039,182	+		Sama_0852	0.22	-0.3
1,039,183	-		Sama_0852	0.22	-1.6
1,039,183	-		Sama_0852	0.22	+0.4
1,039,183	-		Sama_0852	0.22	-2.7
1,039,183	-		Sama_0852	0.22	-0.5
1,039,215	+		Sama_0852	0.28	-0.4
1,039,216	-		Sama_0852	0.28	+0.2
1,039,256	+		Sama_0852	0.34	-1.5
1,039,256	+		Sama_0852	0.34	+0.4
1,039,256	+		Sama_0852	0.34	-0.2
1,039,256	+		Sama_0852	0.34	+0.7
1,039,257	-		Sama_0852	0.34	+0.6
1,039,257	-		Sama_0852	0.34	-0.2
1,039,257	-		Sama_0852	0.34	-0.4
1,039,257	-		Sama_0852	0.34	+0.4
1,039,257	-		Sama_0852	0.34	+0.8
1,039,322	-		Sama_0852	0.45	+0.8
1,039,352	+		Sama_0852	0.50	+0.3
1,039,353	-		Sama_0852	0.50	-0.2
1,039,361	-		Sama_0852	0.51	+1.4
1,039,361	-		Sama_0852	0.51	+0.1
1,039,361	-		Sama_0852	0.51	+2.4
1,039,364	+		Sama_0852	0.51	+0.8
1,039,364	+		Sama_0852	0.51	-0.5
1,039,364	+		Sama_0852	0.51	-2.6
1,039,365	-		Sama_0852	0.52	+1.0
1,039,365	-		Sama_0852	0.52	+0.0
1,039,365	-		Sama_0852	0.52	-0.0
1,039,365	-		Sama_0852	0.52	+0.8
1,039,365	-		Sama_0852	0.52	-0.7
1,039,401	+		Sama_0852	0.57	+1.3
1,039,401	+		Sama_0852	0.57	-0.6
1,039,401	+		Sama_0852	0.57	+0.5
1,039,401	+		Sama_0852	0.57	-1.4
1,039,402	-		Sama_0852	0.58	+0.4
1,039,402	-		Sama_0852	0.58	+0.1
1,039,402	-		Sama_0852	0.58	+0.5
1,039,415	-		Sama_0852	0.60	-0.6
1,039,442	-		Sama_0852	0.64	+0.4
1,039,442	-		Sama_0852	0.64	+0.2