Experiment: marine broth pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09120 and PGA1_c09130 overlap by 1 nucleotides PGA1_c09130 and PGA1_c09140 overlap by 4 nucleotides PGA1_c09140 and PGA1_c09150 overlap by 4 nucleotides
PGA1_c09120: PGA1_c09120 - biotin synthase BioB, at 937,745 to 938,722
_c09120
PGA1_c09130: PGA1_c09130 - 8-amino-7-oxononanoate synthase BioF, at 938,722 to 939,861
_c09130
PGA1_c09140: PGA1_c09140 - dethiobiotin synthetase BioD, at 939,858 to 940,499
_c09140
PGA1_c09150: PGA1_c09150 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA, at 940,496 to 941,794
_c09150
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.724 kb on - strand at 937.739 kb on - strand at 937.762 kb on + strand at 937.772 kb on + strand at 937.921 kb on + strand, within PGA1_c09120 at 937.929 kb on - strand, within PGA1_c09120 at 937.963 kb on + strand, within PGA1_c09120 at 937.981 kb on + strand, within PGA1_c09120 at 938.067 kb on + strand, within PGA1_c09120 at 938.139 kb on + strand, within PGA1_c09120 at 938.145 kb on + strand, within PGA1_c09120 at 938.145 kb on + strand, within PGA1_c09120 at 938.165 kb on + strand, within PGA1_c09120 at 938.190 kb on - strand, within PGA1_c09120 at 938.241 kb on - strand, within PGA1_c09120 at 938.262 kb on + strand, within PGA1_c09120 at 938.343 kb on - strand, within PGA1_c09120 at 938.356 kb on + strand, within PGA1_c09120 at 938.419 kb on - strand, within PGA1_c09120 at 938.467 kb on + strand, within PGA1_c09120 at 938.564 kb on + strand, within PGA1_c09120 at 938.839 kb on - strand, within PGA1_c09130 at 938.839 kb on - strand, within PGA1_c09130 at 938.901 kb on - strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 939.005 kb on - strand, within PGA1_c09130 at 939.005 kb on - strand, within PGA1_c09130 at 939.005 kb on - strand, within PGA1_c09130 at 939.081 kb on + strand, within PGA1_c09130 at 939.084 kb on - strand, within PGA1_c09130 at 939.207 kb on + strand, within PGA1_c09130 at 939.207 kb on + strand, within PGA1_c09130 at 939.207 kb on + strand, within PGA1_c09130 at 939.233 kb on + strand, within PGA1_c09130 at 939.323 kb on + strand, within PGA1_c09130 at 939.353 kb on + strand, within PGA1_c09130 at 939.357 kb on + strand, within PGA1_c09130 at 939.365 kb on + strand, within PGA1_c09130 at 939.401 kb on + strand, within PGA1_c09130 at 939.412 kb on + strand, within PGA1_c09130 at 939.430 kb on + strand, within PGA1_c09130 at 939.476 kb on - strand, within PGA1_c09130 at 939.493 kb on - strand, within PGA1_c09130 at 939.528 kb on + strand, within PGA1_c09130 at 939.533 kb on + strand, within PGA1_c09130 at 939.541 kb on - strand, within PGA1_c09130 at 939.604 kb on - strand, within PGA1_c09130 at 939.634 kb on + strand, within PGA1_c09130 at 939.646 kb on + strand, within PGA1_c09130 at 939.661 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.704 kb on - strand, within PGA1_c09130 at 939.719 kb on + strand, within PGA1_c09130 at 939.727 kb on - strand, within PGA1_c09130 at 939.807 kb on + strand at 939.807 kb on + strand at 939.812 kb on + strand at 939.815 kb on - strand at 939.820 kb on - strand at 939.829 kb on + strand at 939.945 kb on - strand, within PGA1_c09140 at 939.997 kb on + strand, within PGA1_c09140 at 940.023 kb on - strand, within PGA1_c09140 at 940.033 kb on - strand, within PGA1_c09140 at 940.084 kb on - strand, within PGA1_c09140 at 940.156 kb on + strand, within PGA1_c09140 at 940.252 kb on + strand, within PGA1_c09140 at 940.300 kb on + strand, within PGA1_c09140 at 940.308 kb on - strand, within PGA1_c09140 at 940.311 kb on + strand, within PGA1_c09140 at 940.362 kb on - strand, within PGA1_c09140 at 940.458 kb on + strand at 940.486 kb on - strand at 940.486 kb on - strand at 940.511 kb on - strand at 940.549 kb on + strand at 940.549 kb on + strand at 940.549 kb on + strand at 940.557 kb on - strand at 940.557 kb on - strand at 940.557 kb on - strand at 940.621 kb on + strand at 940.657 kb on - strand, within PGA1_c09150 at 940.725 kb on - strand, within PGA1_c09150 at 940.730 kb on - strand, within PGA1_c09150
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH6.5 remove 937,724 - -1.4 937,739 - -2.2 937,762 + +0.6 937,772 + +0.1 937,921 + PGA1_c09120 0.18 -2.0 937,929 - PGA1_c09120 0.19 +1.3 937,963 + PGA1_c09120 0.22 +1.3 937,981 + PGA1_c09120 0.24 +0.8 938,067 + PGA1_c09120 0.33 +0.6 938,139 + PGA1_c09120 0.40 -0.4 938,145 + PGA1_c09120 0.41 -0.3 938,145 + PGA1_c09120 0.41 -0.3 938,165 + PGA1_c09120 0.43 -2.4 938,190 - PGA1_c09120 0.46 +0.0 938,241 - PGA1_c09120 0.51 +0.1 938,262 + PGA1_c09120 0.53 +1.1 938,343 - PGA1_c09120 0.61 -0.2 938,356 + PGA1_c09120 0.62 -0.9 938,419 - PGA1_c09120 0.69 +1.2 938,467 + PGA1_c09120 0.74 -3.3 938,564 + PGA1_c09120 0.84 -0.7 938,839 - PGA1_c09130 0.10 +0.4 938,839 - PGA1_c09130 0.10 -0.2 938,901 - PGA1_c09130 0.16 +0.2 938,997 + PGA1_c09130 0.24 +1.3 938,997 + PGA1_c09130 0.24 +0.3 938,997 + PGA1_c09130 0.24 -1.0 938,997 + PGA1_c09130 0.24 -1.0 938,997 + PGA1_c09130 0.24 -0.8 939,005 - PGA1_c09130 0.25 -0.7 939,005 - PGA1_c09130 0.25 +1.0 939,005 - PGA1_c09130 0.25 -1.5 939,081 + PGA1_c09130 0.31 +0.3 939,084 - PGA1_c09130 0.32 +0.8 939,207 + PGA1_c09130 0.43 -0.1 939,207 + PGA1_c09130 0.43 -2.2 939,207 + PGA1_c09130 0.43 +0.1 939,233 + PGA1_c09130 0.45 -1.9 939,323 + PGA1_c09130 0.53 +0.1 939,353 + PGA1_c09130 0.55 -2.6 939,357 + PGA1_c09130 0.56 -2.2 939,365 + PGA1_c09130 0.56 -0.5 939,401 + PGA1_c09130 0.60 -1.9 939,412 + PGA1_c09130 0.61 -2.3 939,430 + PGA1_c09130 0.62 -1.2 939,476 - PGA1_c09130 0.66 +0.5 939,493 - PGA1_c09130 0.68 +0.9 939,528 + PGA1_c09130 0.71 +0.1 939,533 + PGA1_c09130 0.71 +0.1 939,541 - PGA1_c09130 0.72 +1.1 939,604 - PGA1_c09130 0.77 -0.9 939,634 + PGA1_c09130 0.80 +0.9 939,646 + PGA1_c09130 0.81 -0.5 939,661 + PGA1_c09130 0.82 -1.0 939,696 + PGA1_c09130 0.85 -0.5 939,696 + PGA1_c09130 0.85 +2.0 939,696 + PGA1_c09130 0.85 -0.9 939,696 + PGA1_c09130 0.85 +0.8 939,696 + PGA1_c09130 0.85 +0.7 939,704 - PGA1_c09130 0.86 -0.7 939,719 + PGA1_c09130 0.87 -1.3 939,727 - PGA1_c09130 0.88 -1.3 939,807 + +1.6 939,807 + +0.5 939,812 + +0.5 939,815 - +0.9 939,820 - +0.1 939,829 + +0.5 939,945 - PGA1_c09140 0.14 -0.0 939,997 + PGA1_c09140 0.22 -2.3 940,023 - PGA1_c09140 0.26 +0.1 940,033 - PGA1_c09140 0.27 +0.1 940,084 - PGA1_c09140 0.35 +0.4 940,156 + PGA1_c09140 0.46 +0.7 940,252 + PGA1_c09140 0.61 +0.3 940,300 + PGA1_c09140 0.69 -1.3 940,308 - PGA1_c09140 0.70 -0.8 940,311 + PGA1_c09140 0.71 -0.9 940,362 - PGA1_c09140 0.79 -0.3 940,458 + +0.7 940,486 - +1.2 940,486 - +0.6 940,511 - +0.1 940,549 + -0.3 940,549 + -1.5 940,549 + -1.0 940,557 - +1.6 940,557 - +0.5 940,557 - -0.8 940,621 + +0.1 940,657 - PGA1_c09150 0.12 +0.1 940,725 - PGA1_c09150 0.18 -0.9 940,730 - PGA1_c09150 0.18 +0.0
Or see this region's nucleotide sequence