Experiment: marine broth pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06360 and PGA1_c06370 are separated by 219 nucleotides PGA1_c06370 and PGA1_c06380 are separated by 183 nucleotides PGA1_c06380 and PGA1_c06390 are separated by 192 nucleotides
PGA1_c06360: PGA1_c06360 - Secreted and surface protein containing fasciclin-like repeats, at 651,589 to 652,065
_c06360
PGA1_c06370: PGA1_c06370 - adenine phosphoribosyltransferase Apt, at 652,285 to 652,824
_c06370
PGA1_c06380: PGA1_c06380 - putative methylthioadenosine phosphorylase, at 653,008 to 654,021
_c06380
PGA1_c06390: PGA1_c06390 - putative sulfate transporter, at 654,214 to 655,854
_c06390
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.042 kb on + strand at 652.042 kb on + strand at 652.050 kb on - strand at 652.068 kb on + strand at 652.080 kb on + strand at 652.088 kb on - strand at 652.101 kb on - strand at 652.113 kb on + strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.300 kb on - strand at 652.306 kb on - strand at 652.317 kb on + strand at 652.341 kb on - strand, within PGA1_c06370 at 652.424 kb on - strand, within PGA1_c06370 at 652.424 kb on - strand, within PGA1_c06370 at 652.508 kb on + strand, within PGA1_c06370 at 652.595 kb on - strand, within PGA1_c06370 at 652.629 kb on + strand, within PGA1_c06370 at 652.775 kb on - strand at 652.900 kb on - strand at 652.962 kb on + strand at 652.964 kb on - strand at 653.006 kb on + strand at 653.008 kb on - strand at 653.086 kb on - strand at 653.137 kb on + strand, within PGA1_c06380 at 653.251 kb on - strand, within PGA1_c06380 at 653.311 kb on - strand, within PGA1_c06380 at 653.337 kb on + strand, within PGA1_c06380 at 653.345 kb on - strand, within PGA1_c06380 at 653.500 kb on + strand, within PGA1_c06380 at 653.617 kb on + strand, within PGA1_c06380 at 653.643 kb on + strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.764 kb on + strand, within PGA1_c06380 at 653.767 kb on - strand, within PGA1_c06380 at 653.778 kb on + strand, within PGA1_c06380 at 653.783 kb on + strand, within PGA1_c06380 at 653.894 kb on + strand, within PGA1_c06380 at 653.925 kb on - strand at 653.926 kb on - strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.019 kb on + strand at 654.022 kb on - strand at 654.028 kb on - strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.071 kb on - strand at 654.071 kb on - strand at 654.072 kb on - strand at 654.104 kb on - strand at 654.130 kb on + strand at 654.143 kb on + strand at 654.151 kb on - strand at 654.203 kb on + strand at 654.224 kb on + strand at 654.279 kb on + strand at 654.321 kb on - strand at 654.412 kb on + strand, within PGA1_c06390 at 654.507 kb on + strand, within PGA1_c06390 at 654.516 kb on + strand, within PGA1_c06390 at 654.542 kb on + strand, within PGA1_c06390 at 654.562 kb on + strand, within PGA1_c06390 at 654.620 kb on + strand, within PGA1_c06390 at 654.681 kb on + strand, within PGA1_c06390 at 654.689 kb on - strand, within PGA1_c06390 at 654.776 kb on - strand, within PGA1_c06390 at 654.787 kb on - strand, within PGA1_c06390 at 654.931 kb on + strand, within PGA1_c06390 at 654.939 kb on - strand, within PGA1_c06390
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH6.5 remove 652,042 + -0.9 652,042 + -0.3 652,050 - +3.7 652,068 + -2.2 652,080 + +0.3 652,088 - +0.8 652,101 - +1.2 652,113 + +1.2 652,121 - +1.3 652,121 - -0.1 652,121 - -0.5 652,300 - -0.5 652,306 - -0.4 652,317 + -0.8 652,341 - PGA1_c06370 0.10 -0.5 652,424 - PGA1_c06370 0.26 -1.7 652,424 - PGA1_c06370 0.26 -0.2 652,508 + PGA1_c06370 0.41 +0.3 652,595 - PGA1_c06370 0.57 -3.1 652,629 + PGA1_c06370 0.64 -2.4 652,775 - +1.2 652,900 - +1.5 652,962 + -2.1 652,964 - -0.7 653,006 + -2.7 653,008 - -0.9 653,086 - +1.4 653,137 + PGA1_c06380 0.13 -0.3 653,251 - PGA1_c06380 0.24 +0.2 653,311 - PGA1_c06380 0.30 -0.7 653,337 + PGA1_c06380 0.32 +0.5 653,345 - PGA1_c06380 0.33 -0.4 653,500 + PGA1_c06380 0.49 +1.1 653,617 + PGA1_c06380 0.60 +0.1 653,643 + PGA1_c06380 0.63 +0.8 653,651 - PGA1_c06380 0.63 -2.1 653,651 - PGA1_c06380 0.63 +1.8 653,764 + PGA1_c06380 0.75 +0.1 653,767 - PGA1_c06380 0.75 -1.9 653,778 + PGA1_c06380 0.76 -0.2 653,783 + PGA1_c06380 0.76 +0.1 653,894 + PGA1_c06380 0.87 +0.6 653,925 - -0.5 653,926 - +0.7 654,018 + +0.1 654,018 + -0.6 654,018 + +1.8 654,019 + +2.2 654,022 - +1.0 654,028 - -0.0 654,063 + -0.0 654,063 + -0.9 654,063 + +0.4 654,071 - -0.8 654,071 - -0.9 654,072 - +1.6 654,104 - +0.4 654,130 + +0.4 654,143 + +0.6 654,151 - -0.5 654,203 + +0.1 654,224 + +0.1 654,279 + +0.8 654,321 - -0.4 654,412 + PGA1_c06390 0.12 +2.0 654,507 + PGA1_c06390 0.18 -1.1 654,516 + PGA1_c06390 0.18 -0.7 654,542 + PGA1_c06390 0.20 +0.6 654,562 + PGA1_c06390 0.21 -1.4 654,620 + PGA1_c06390 0.25 +0.6 654,681 + PGA1_c06390 0.28 -1.8 654,689 - PGA1_c06390 0.29 +0.4 654,776 - PGA1_c06390 0.34 +1.8 654,787 - PGA1_c06390 0.35 +1.7 654,931 + PGA1_c06390 0.44 +0.1 654,939 - PGA1_c06390 0.44 +1.5
Or see this region's nucleotide sequence