Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3823 and Psest_3824 are separated by 31 nucleotides Psest_3824 and Psest_3825 are separated by 18 nucleotides Psest_3825 and Psest_3826 overlap by 4 nucleotides
Psest_3823: Psest_3823 - hypothetical protein, at 3,993,771 to 3,995,048
_3823
Psest_3824: Psest_3824 - Predicted membrane protein, at 3,995,080 to 3,995,697
_3824
Psest_3825: Psest_3825 - Beta-propeller domains of methanol dehydrogenase type, at 3,995,716 to 3,996,468
_3825
Psest_3826: Psest_3826 - Uncharacterized conserved protein, at 3,996,465 to 3,997,073
_3826
Position (kb)
3995
3996 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.680 kb on + strand, within Psest_3823 at 3994.681 kb on - strand, within Psest_3823 at 3994.681 kb on - strand, within Psest_3823 at 3994.681 kb on - strand, within Psest_3823 at 3995.020 kb on + strand at 3995.020 kb on + strand at 3995.020 kb on + strand at 3995.020 kb on + strand at 3995.020 kb on + strand at 3995.021 kb on - strand at 3995.021 kb on - strand at 3995.267 kb on - strand, within Psest_3824 at 3995.294 kb on + strand, within Psest_3824 at 3995.294 kb on + strand, within Psest_3824 at 3995.294 kb on + strand, within Psest_3824 at 3995.294 kb on + strand, within Psest_3824 at 3995.295 kb on - strand, within Psest_3824 at 3995.404 kb on + strand, within Psest_3824 at 3995.579 kb on + strand, within Psest_3824 at 3995.579 kb on + strand, within Psest_3824 at 3995.580 kb on - strand, within Psest_3824 at 3995.580 kb on - strand, within Psest_3824 at 3995.615 kb on - strand, within Psest_3824 at 3995.689 kb on + strand at 3995.689 kb on + strand at 3995.718 kb on - strand at 3995.718 kb on - strand at 3995.718 kb on - strand at 3996.544 kb on + strand, within Psest_3826 at 3996.544 kb on + strand, within Psest_3826 at 3996.544 kb on + strand, within Psest_3826 at 3996.544 kb on + strand, within Psest_3826 at 3996.544 kb on + strand, within Psest_3826 at 3996.545 kb on - strand, within Psest_3826 at 3996.545 kb on - strand, within Psest_3826 at 3996.545 kb on - strand, within Psest_3826 at 3996.545 kb on - strand at 3996.545 kb on - strand, within Psest_3826 at 3996.545 kb on - strand, within Psest_3826 at 3996.545 kb on - strand, within Psest_3826 at 3996.595 kb on + strand, within Psest_3826 at 3996.595 kb on + strand, within Psest_3826
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,994,680 + Psest_3823 0.71 +1.0 3,994,680 + Psest_3823 0.71 +0.5 3,994,680 + Psest_3823 0.71 -1.0 3,994,680 + Psest_3823 0.71 -0.5 3,994,680 + Psest_3823 0.71 +1.4 3,994,680 + Psest_3823 0.71 +0.1 3,994,680 + Psest_3823 0.71 +0.3 3,994,680 + Psest_3823 0.71 -1.1 3,994,680 + Psest_3823 0.71 +0.5 3,994,681 - Psest_3823 0.71 -2.0 3,994,681 - Psest_3823 0.71 -0.5 3,994,681 - Psest_3823 0.71 +0.4 3,995,020 + +0.1 3,995,020 + +1.0 3,995,020 + -0.6 3,995,020 + +0.6 3,995,020 + -0.7 3,995,021 - +1.0 3,995,021 - -2.2 3,995,267 - Psest_3824 0.30 -0.6 3,995,294 + Psest_3824 0.35 -0.4 3,995,294 + Psest_3824 0.35 -2.2 3,995,294 + Psest_3824 0.35 +0.2 3,995,294 + Psest_3824 0.35 +0.4 3,995,295 - Psest_3824 0.35 -0.4 3,995,404 + Psest_3824 0.52 -0.8 3,995,579 + Psest_3824 0.81 +2.5 3,995,579 + Psest_3824 0.81 -0.0 3,995,580 - Psest_3824 0.81 -1.9 3,995,580 - Psest_3824 0.81 -1.0 3,995,615 - Psest_3824 0.87 +1.0 3,995,689 + -0.4 3,995,689 + -0.4 3,995,718 - +1.8 3,995,718 - +1.2 3,995,718 - +2.3 3,996,544 + Psest_3826 0.13 -0.3 3,996,544 + Psest_3826 0.13 +0.0 3,996,544 + Psest_3826 0.13 -0.1 3,996,544 + Psest_3826 0.13 -1.2 3,996,544 + Psest_3826 0.13 +0.3 3,996,545 - Psest_3826 0.13 +0.7 3,996,545 - Psest_3826 0.13 +0.1 3,996,545 - Psest_3826 0.13 +2.0 3,996,545 - +1.0 3,996,545 - Psest_3826 0.13 +0.4 3,996,545 - Psest_3826 0.13 +1.1 3,996,545 - Psest_3826 0.13 -1.0 3,996,595 + Psest_3826 0.21 -1.9 3,996,595 + Psest_3826 0.21 -0.6
Or see this region's nucleotide sequence