Experiment: marine broth pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03300 and PGA1_c03310 are separated by 166 nucleotides PGA1_c03310 and PGA1_c03320 are separated by 157 nucleotides
PGA1_c03300: PGA1_c03300 - glyoxalase/bleomycin resistance protein domain-containing protein, at 315,783 to 316,166
_c03300
PGA1_c03310: PGA1_c03310 - redox-sensitive transcriptional activator, at 316,333 to 316,827
_c03310
PGA1_c03320: PGA1_c03320 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 316,985 to 318,634
_c03320
Position (kb) 316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 315.359 kb on - strand at 315.372 kb on - strand at 315.374 kb on + strand at 315.473 kb on - strand at 315.513 kb on - strand at 315.519 kb on + strand at 315.533 kb on - strand at 315.542 kb on + strand at 315.542 kb on + strand at 315.550 kb on - strand at 315.550 kb on - strand at 315.553 kb on + strand at 315.561 kb on - strand at 315.569 kb on - strand at 315.649 kb on - strand at 315.655 kb on + strand at 315.655 kb on + strand at 315.711 kb on - strand at 315.740 kb on + strand at 315.760 kb on + strand at 315.858 kb on + strand, within PGA1_c03300 at 315.858 kb on + strand, within PGA1_c03300 at 315.871 kb on + strand, within PGA1_c03300 at 315.875 kb on + strand, within PGA1_c03300 at 315.896 kb on + strand, within PGA1_c03300 at 315.902 kb on - strand, within PGA1_c03300 at 315.926 kb on - strand, within PGA1_c03300 at 315.961 kb on - strand, within PGA1_c03300 at 315.966 kb on - strand, within PGA1_c03300 at 315.969 kb on + strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.989 kb on + strand, within PGA1_c03300 at 315.989 kb on - strand, within PGA1_c03300 at 315.997 kb on - strand, within PGA1_c03300 at 316.033 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.042 kb on - strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.156 kb on - strand at 316.167 kb on + strand at 316.169 kb on - strand at 316.284 kb on + strand at 316.299 kb on + strand at 316.307 kb on - strand at 316.307 kb on - strand at 316.314 kb on - strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.350 kb on - strand at 316.364 kb on + strand at 316.372 kb on - strand at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.421 kb on + strand, within PGA1_c03310 at 316.425 kb on + strand, within PGA1_c03310 at 316.433 kb on - strand, within PGA1_c03310 at 316.439 kb on - strand, within PGA1_c03310 at 316.440 kb on + strand, within PGA1_c03310 at 316.474 kb on + strand, within PGA1_c03310 at 316.474 kb on + strand, within PGA1_c03310 at 316.519 kb on - strand, within PGA1_c03310 at 316.561 kb on + strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.597 kb on - strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.732 kb on + strand, within PGA1_c03310 at 316.736 kb on - strand, within PGA1_c03310 at 316.738 kb on + strand, within PGA1_c03310 at 316.744 kb on + strand, within PGA1_c03310 at 316.760 kb on + strand, within PGA1_c03310 at 316.852 kb on + strand at 316.857 kb on - strand at 316.860 kb on - strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.878 kb on + strand at 316.909 kb on - strand at 316.942 kb on - strand at 316.942 kb on - strand at 316.957 kb on + strand at 316.957 kb on + strand at 316.960 kb on - strand at 316.960 kb on - strand at 316.960 kb on - strand at 316.964 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH6.5 remove 315,359 - +0.6 315,372 - -1.0 315,374 + -1.2 315,473 - +1.1 315,513 - +0.6 315,519 + +3.9 315,533 - +0.2 315,542 + -0.2 315,542 + +0.4 315,550 - -0.5 315,550 - +0.9 315,553 + -0.5 315,561 - -0.1 315,569 - +0.5 315,649 - +0.4 315,655 + +0.2 315,655 + +1.5 315,711 - +0.1 315,740 + +0.3 315,760 + -0.3 315,858 + PGA1_c03300 0.20 -1.1 315,858 + PGA1_c03300 0.20 -1.1 315,871 + PGA1_c03300 0.23 -0.1 315,875 + PGA1_c03300 0.24 +0.2 315,896 + PGA1_c03300 0.29 -0.0 315,902 - PGA1_c03300 0.31 -0.6 315,926 - PGA1_c03300 0.37 +0.2 315,961 - PGA1_c03300 0.46 -0.3 315,966 - PGA1_c03300 0.48 -0.4 315,969 + PGA1_c03300 0.48 -0.6 315,969 - PGA1_c03300 0.48 -2.1 315,969 - PGA1_c03300 0.48 -0.6 315,989 + PGA1_c03300 0.54 +0.3 315,989 - PGA1_c03300 0.54 -2.0 315,997 - PGA1_c03300 0.56 -0.8 316,033 + PGA1_c03300 0.65 +0.8 316,034 + PGA1_c03300 0.65 +0.1 316,034 + PGA1_c03300 0.65 -0.4 316,042 - PGA1_c03300 0.67 +0.0 316,123 + PGA1_c03300 0.89 +0.9 316,123 + PGA1_c03300 0.89 +2.0 316,156 - -0.1 316,167 + -0.9 316,169 - -1.0 316,284 + -2.1 316,299 + -1.0 316,307 - -0.5 316,307 - +0.4 316,314 - -0.1 316,316 + +0.4 316,316 + +0.6 316,316 + -0.2 316,316 + -0.3 316,316 + +0.7 316,316 + +0.2 316,316 + -0.7 316,316 + -0.5 316,316 + +0.9 316,324 - +0.4 316,324 - +0.2 316,324 - +0.4 316,324 - -1.5 316,324 - -0.1 316,324 - +0.0 316,324 - -0.3 316,324 - -1.0 316,324 - +0.2 316,324 - +0.6 316,324 - -1.4 316,350 - +0.6 316,364 + -0.8 316,372 - +1.0 316,419 + PGA1_c03310 0.17 -0.0 316,419 + PGA1_c03310 0.17 -0.7 316,419 + PGA1_c03310 0.17 +0.7 316,419 + PGA1_c03310 0.17 +0.5 316,421 + PGA1_c03310 0.18 -1.5 316,425 + PGA1_c03310 0.19 +0.9 316,433 - PGA1_c03310 0.20 -1.2 316,439 - PGA1_c03310 0.21 -1.0 316,440 + PGA1_c03310 0.22 -0.3 316,474 + PGA1_c03310 0.28 -2.5 316,474 + PGA1_c03310 0.28 +0.6 316,519 - PGA1_c03310 0.38 -0.7 316,561 + PGA1_c03310 0.46 -0.8 316,569 - PGA1_c03310 0.48 +1.2 316,569 - PGA1_c03310 0.48 -0.3 316,569 - PGA1_c03310 0.48 +1.7 316,597 - PGA1_c03310 0.53 +1.3 316,703 + PGA1_c03310 0.75 +1.2 316,703 + PGA1_c03310 0.75 -1.6 316,703 + PGA1_c03310 0.75 -0.9 316,703 + PGA1_c03310 0.75 +0.9 316,732 + PGA1_c03310 0.81 -3.0 316,736 - PGA1_c03310 0.81 +0.8 316,738 + PGA1_c03310 0.82 +1.8 316,744 + PGA1_c03310 0.83 -2.7 316,760 + PGA1_c03310 0.86 -0.6 316,852 + +0.4 316,857 - -1.2 316,860 - +0.8 316,862 + +0.4 316,862 + +0.7 316,862 + -0.9 316,862 + -0.7 316,870 - +1.2 316,870 - -0.6 316,870 - +0.3 316,870 - +0.7 316,870 - -1.2 316,870 - -0.8 316,878 + +0.1 316,909 - +0.1 316,942 - -0.1 316,942 - -1.8 316,957 + +0.6 316,957 + -0.2 316,960 - -1.0 316,960 - -0.2 316,960 - +1.4 316,964 - +1.4 316,965 - -1.6 316,965 - -0.5 316,965 - -2.2 316,965 - +0.2
Or see this region's nucleotide sequence