Experiment: marine broth pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03100 and PGA1_c03110 are separated by 33 nucleotides PGA1_c03110 and PGA1_c03120 are separated by 32 nucleotides PGA1_c03120 and PGA1_c03130 are separated by 178 nucleotides PGA1_c03130 and PGA1_c03140 are separated by 35 nucleotides
PGA1_c03100: PGA1_c03100 - putative aminoglycoside efflux pump, at 296,920 to 300,315
_c03100
PGA1_c03110: PGA1_c03110 - NUDIX hydrolase, at 300,349 to 300,858
_c03110
PGA1_c03120: PGA1_c03120 - hypothetical protein, at 300,891 to 301,745
_c03120
PGA1_c03130: PGA1_c03130 - Putative transcriptional regulator, at 301,924 to 302,481
_c03130
PGA1_c03140: PGA1_c03140 - putative tRNA threonylcarbamoyladenosine biosynthesis protein, at 302,517 to 303,464
_c03140
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 299.895 kb on + strand, within PGA1_c03100 at 299.949 kb on + strand, within PGA1_c03100 at 299.957 kb on - strand, within PGA1_c03100 at 300.019 kb on + strand at 300.019 kb on + strand at 300.089 kb on + strand at 300.205 kb on + strand at 300.215 kb on + strand at 300.319 kb on + strand at 300.425 kb on - strand, within PGA1_c03110 at 300.430 kb on - strand, within PGA1_c03110 at 300.539 kb on + strand, within PGA1_c03110 at 300.612 kb on + strand, within PGA1_c03110 at 300.620 kb on - strand, within PGA1_c03110 at 300.669 kb on - strand, within PGA1_c03110 at 300.707 kb on - strand, within PGA1_c03110 at 300.713 kb on + strand, within PGA1_c03110 at 300.743 kb on - strand, within PGA1_c03110 at 300.859 kb on + strand at 300.864 kb on + strand at 300.906 kb on + strand at 300.906 kb on + strand at 300.976 kb on + strand at 300.976 kb on + strand at 300.984 kb on - strand, within PGA1_c03120 at 301.036 kb on + strand, within PGA1_c03120 at 301.110 kb on - strand, within PGA1_c03120 at 301.172 kb on - strand, within PGA1_c03120 at 301.274 kb on + strand, within PGA1_c03120 at 301.282 kb on + strand, within PGA1_c03120 at 301.282 kb on - strand, within PGA1_c03120 at 301.302 kb on - strand, within PGA1_c03120 at 301.390 kb on - strand, within PGA1_c03120 at 301.435 kb on + strand, within PGA1_c03120 at 301.565 kb on + strand, within PGA1_c03120 at 301.687 kb on + strand at 301.687 kb on + strand at 301.713 kb on + strand at 301.733 kb on + strand at 301.741 kb on - strand at 301.750 kb on + strand at 301.753 kb on - strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.830 kb on + strand at 301.832 kb on - strand at 301.837 kb on - strand at 301.865 kb on + strand at 301.884 kb on + strand at 301.907 kb on + strand at 301.907 kb on + strand at 301.927 kb on + strand at 301.969 kb on - strand at 302.008 kb on + strand, within PGA1_c03130 at 302.008 kb on + strand, within PGA1_c03130 at 302.008 kb on + strand, within PGA1_c03130 at 302.016 kb on - strand, within PGA1_c03130 at 302.016 kb on - strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.119 kb on + strand, within PGA1_c03130 at 302.153 kb on - strand, within PGA1_c03130 at 302.157 kb on + strand, within PGA1_c03130 at 302.165 kb on - strand, within PGA1_c03130 at 302.170 kb on - strand, within PGA1_c03130 at 302.170 kb on - strand, within PGA1_c03130 at 302.201 kb on + strand, within PGA1_c03130 at 302.223 kb on - strand, within PGA1_c03130 at 302.233 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.294 kb on - strand, within PGA1_c03130 at 302.294 kb on - strand, within PGA1_c03130 at 302.301 kb on + strand, within PGA1_c03130 at 302.301 kb on + strand, within PGA1_c03130 at 302.312 kb on + strand, within PGA1_c03130 at 302.375 kb on + strand, within PGA1_c03130 at 302.375 kb on + strand, within PGA1_c03130 at 302.438 kb on + strand at 302.454 kb on - strand at 302.463 kb on - strand at 302.465 kb on + strand at 302.470 kb on + strand at 302.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH6.5 remove 299,895 + PGA1_c03100 0.88 -0.3 299,949 + PGA1_c03100 0.89 -0.5 299,957 - PGA1_c03100 0.89 -0.7 300,019 + +0.1 300,019 + -0.8 300,089 + +0.4 300,205 + +0.0 300,215 + -1.8 300,319 + +0.7 300,425 - PGA1_c03110 0.15 -1.2 300,430 - PGA1_c03110 0.16 -1.5 300,539 + PGA1_c03110 0.37 -0.9 300,612 + PGA1_c03110 0.52 -0.2 300,620 - PGA1_c03110 0.53 -0.4 300,669 - PGA1_c03110 0.63 +0.2 300,707 - PGA1_c03110 0.70 -0.3 300,713 + PGA1_c03110 0.71 +0.7 300,743 - PGA1_c03110 0.77 +0.6 300,859 + +0.3 300,864 + -0.5 300,906 + +1.3 300,906 + -2.2 300,976 + -2.9 300,976 + +0.1 300,984 - PGA1_c03120 0.11 -0.7 301,036 + PGA1_c03120 0.17 -2.4 301,110 - PGA1_c03120 0.26 -1.4 301,172 - PGA1_c03120 0.33 -0.5 301,274 + PGA1_c03120 0.45 -0.5 301,282 + PGA1_c03120 0.46 -2.2 301,282 - PGA1_c03120 0.46 -0.2 301,302 - PGA1_c03120 0.48 +0.1 301,390 - PGA1_c03120 0.58 -1.2 301,435 + PGA1_c03120 0.64 +0.3 301,565 + PGA1_c03120 0.79 -3.7 301,687 + -2.2 301,687 + +1.1 301,713 + -0.5 301,733 + +0.8 301,741 - -1.2 301,750 + -2.7 301,753 - -0.2 301,829 + +1.0 301,829 + -0.1 301,829 + -0.5 301,829 + +0.7 301,830 + -0.9 301,832 - +0.8 301,837 - +0.9 301,865 + +1.7 301,884 + -0.2 301,907 + -0.2 301,907 + +0.1 301,927 + -0.5 301,969 - -0.6 302,008 + PGA1_c03130 0.15 -0.4 302,008 + PGA1_c03130 0.15 -2.6 302,008 + PGA1_c03130 0.15 -0.8 302,016 - PGA1_c03130 0.16 +0.8 302,016 - PGA1_c03130 0.16 +0.4 302,105 + PGA1_c03130 0.32 -0.6 302,105 + PGA1_c03130 0.32 +0.6 302,105 + PGA1_c03130 0.32 -2.7 302,105 + PGA1_c03130 0.32 +1.1 302,105 + PGA1_c03130 0.32 +1.0 302,105 + PGA1_c03130 0.32 -1.6 302,105 + PGA1_c03130 0.32 -1.6 302,105 + PGA1_c03130 0.32 -1.7 302,105 + PGA1_c03130 0.32 +0.7 302,105 + PGA1_c03130 0.32 -0.4 302,105 + PGA1_c03130 0.32 +0.4 302,105 + PGA1_c03130 0.32 -0.1 302,105 + PGA1_c03130 0.32 -0.5 302,105 + PGA1_c03130 0.32 +1.8 302,105 + PGA1_c03130 0.32 +1.9 302,105 + PGA1_c03130 0.32 +1.0 302,105 + PGA1_c03130 0.32 -0.6 302,105 + PGA1_c03130 0.32 -0.9 302,105 + PGA1_c03130 0.32 +0.4 302,113 - PGA1_c03130 0.34 +0.8 302,113 - PGA1_c03130 0.34 -0.0 302,113 - PGA1_c03130 0.34 -0.5 302,113 - PGA1_c03130 0.34 -1.8 302,113 - PGA1_c03130 0.34 +0.4 302,113 - PGA1_c03130 0.34 -0.9 302,113 - PGA1_c03130 0.34 -2.6 302,113 - PGA1_c03130 0.34 +1.7 302,113 - PGA1_c03130 0.34 -0.2 302,113 - PGA1_c03130 0.34 +1.5 302,119 + PGA1_c03130 0.35 +0.5 302,153 - PGA1_c03130 0.41 +0.0 302,157 + PGA1_c03130 0.42 +1.1 302,165 - PGA1_c03130 0.43 +1.4 302,170 - PGA1_c03130 0.44 +0.5 302,170 - PGA1_c03130 0.44 -1.1 302,201 + PGA1_c03130 0.50 +0.5 302,223 - PGA1_c03130 0.54 -0.6 302,233 + PGA1_c03130 0.55 +2.2 302,276 + PGA1_c03130 0.63 +0.4 302,276 + PGA1_c03130 0.63 +0.5 302,276 + PGA1_c03130 0.63 +3.2 302,276 + PGA1_c03130 0.63 +0.3 302,276 + PGA1_c03130 0.63 -2.0 302,276 + PGA1_c03130 0.63 +0.7 302,276 + PGA1_c03130 0.63 +1.4 302,276 + PGA1_c03130 0.63 +0.1 302,276 + PGA1_c03130 0.63 +1.2 302,276 + PGA1_c03130 0.63 +0.8 302,276 + PGA1_c03130 0.63 -0.0 302,284 - PGA1_c03130 0.65 -0.2 302,284 - PGA1_c03130 0.65 -0.0 302,284 - PGA1_c03130 0.65 +2.4 302,284 - PGA1_c03130 0.65 +2.9 302,284 - PGA1_c03130 0.65 -0.2 302,284 - PGA1_c03130 0.65 +1.3 302,284 - PGA1_c03130 0.65 +0.8 302,284 - PGA1_c03130 0.65 -0.6 302,284 - PGA1_c03130 0.65 +0.8 302,284 - PGA1_c03130 0.65 +2.2 302,284 - PGA1_c03130 0.65 +0.7 302,286 + PGA1_c03130 0.65 -2.6 302,286 + PGA1_c03130 0.65 -1.1 302,286 + PGA1_c03130 0.65 -0.3 302,286 + PGA1_c03130 0.65 -0.7 302,294 - PGA1_c03130 0.66 -1.1 302,294 - PGA1_c03130 0.66 +0.8 302,301 + PGA1_c03130 0.68 -0.1 302,301 + PGA1_c03130 0.68 -1.2 302,312 + PGA1_c03130 0.70 +1.2 302,375 + PGA1_c03130 0.81 +0.2 302,375 + PGA1_c03130 0.81 +0.4 302,438 + +1.0 302,454 - +0.9 302,463 - -0.6 302,465 + +1.8 302,470 + +0.8 302,503 - +1.6
Or see this region's nucleotide sequence