Experiment: marine broth pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03100 and PGA1_c03110 are separated by 33 nucleotides PGA1_c03110 and PGA1_c03120 are separated by 32 nucleotides
PGA1_c03100: PGA1_c03100 - putative aminoglycoside efflux pump, at 296,920 to 300,315
_c03100
PGA1_c03110: PGA1_c03110 - NUDIX hydrolase, at 300,349 to 300,858
_c03110
PGA1_c03120: PGA1_c03120 - hypothetical protein, at 300,891 to 301,745
_c03120
Position (kb) 300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 299.419 kb on - strand, within PGA1_c03100 at 299.516 kb on + strand, within PGA1_c03100 at 299.595 kb on - strand, within PGA1_c03100 at 299.623 kb on - strand, within PGA1_c03100 at 299.627 kb on + strand, within PGA1_c03100 at 299.678 kb on - strand, within PGA1_c03100 at 299.693 kb on - strand, within PGA1_c03100 at 299.886 kb on + strand, within PGA1_c03100 at 299.895 kb on + strand, within PGA1_c03100 at 299.949 kb on + strand, within PGA1_c03100 at 299.957 kb on - strand, within PGA1_c03100 at 300.019 kb on + strand at 300.019 kb on + strand at 300.089 kb on + strand at 300.205 kb on + strand at 300.215 kb on + strand at 300.319 kb on + strand at 300.425 kb on - strand, within PGA1_c03110 at 300.430 kb on - strand, within PGA1_c03110 at 300.539 kb on + strand, within PGA1_c03110 at 300.612 kb on + strand, within PGA1_c03110 at 300.620 kb on - strand, within PGA1_c03110 at 300.669 kb on - strand, within PGA1_c03110 at 300.707 kb on - strand, within PGA1_c03110 at 300.713 kb on + strand, within PGA1_c03110 at 300.743 kb on - strand, within PGA1_c03110 at 300.859 kb on + strand at 300.864 kb on + strand at 300.906 kb on + strand at 300.906 kb on + strand at 300.976 kb on + strand at 300.976 kb on + strand at 300.984 kb on - strand, within PGA1_c03120 at 301.036 kb on + strand, within PGA1_c03120 at 301.110 kb on - strand, within PGA1_c03120 at 301.172 kb on - strand, within PGA1_c03120 at 301.274 kb on + strand, within PGA1_c03120 at 301.282 kb on + strand, within PGA1_c03120 at 301.282 kb on - strand, within PGA1_c03120 at 301.302 kb on - strand, within PGA1_c03120 at 301.390 kb on - strand, within PGA1_c03120 at 301.435 kb on + strand, within PGA1_c03120 at 301.565 kb on + strand, within PGA1_c03120 at 301.687 kb on + strand at 301.687 kb on + strand at 301.713 kb on + strand at 301.733 kb on + strand at 301.741 kb on - strand at 301.750 kb on + strand at 301.753 kb on - strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.830 kb on + strand at 301.832 kb on - strand at 301.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH6.5 remove 299,419 - PGA1_c03100 0.74 -0.7 299,516 + PGA1_c03100 0.76 -0.2 299,595 - PGA1_c03100 0.79 -1.6 299,623 - PGA1_c03100 0.80 -0.4 299,627 + PGA1_c03100 0.80 -1.6 299,678 - PGA1_c03100 0.81 -1.2 299,693 - PGA1_c03100 0.82 -2.4 299,886 + PGA1_c03100 0.87 -1.2 299,895 + PGA1_c03100 0.88 -0.3 299,949 + PGA1_c03100 0.89 -0.5 299,957 - PGA1_c03100 0.89 -0.7 300,019 + +0.1 300,019 + -0.8 300,089 + +0.4 300,205 + +0.0 300,215 + -1.8 300,319 + +0.7 300,425 - PGA1_c03110 0.15 -1.2 300,430 - PGA1_c03110 0.16 -1.5 300,539 + PGA1_c03110 0.37 -0.9 300,612 + PGA1_c03110 0.52 -0.2 300,620 - PGA1_c03110 0.53 -0.4 300,669 - PGA1_c03110 0.63 +0.2 300,707 - PGA1_c03110 0.70 -0.3 300,713 + PGA1_c03110 0.71 +0.7 300,743 - PGA1_c03110 0.77 +0.6 300,859 + +0.3 300,864 + -0.5 300,906 + +1.3 300,906 + -2.2 300,976 + -2.9 300,976 + +0.1 300,984 - PGA1_c03120 0.11 -0.7 301,036 + PGA1_c03120 0.17 -2.4 301,110 - PGA1_c03120 0.26 -1.4 301,172 - PGA1_c03120 0.33 -0.5 301,274 + PGA1_c03120 0.45 -0.5 301,282 + PGA1_c03120 0.46 -2.2 301,282 - PGA1_c03120 0.46 -0.2 301,302 - PGA1_c03120 0.48 +0.1 301,390 - PGA1_c03120 0.58 -1.2 301,435 + PGA1_c03120 0.64 +0.3 301,565 + PGA1_c03120 0.79 -3.7 301,687 + -2.2 301,687 + +1.1 301,713 + -0.5 301,733 + +0.8 301,741 - -1.2 301,750 + -2.7 301,753 - -0.2 301,829 + +1.0 301,829 + -0.1 301,829 + -0.5 301,829 + +0.7 301,830 + -0.9 301,832 - +0.8 301,837 - +0.9
Or see this region's nucleotide sequence