Experiment: marine broth pH6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03020 and PGA1_c03030 are separated by 5 nucleotides PGA1_c03030 and PGA1_c03040 overlap by 4 nucleotides PGA1_c03040 and PGA1_c03050 are separated by 1 nucleotides PGA1_c03050 and PGA1_c03060 are separated by 3 nucleotides
PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322
_c03020
PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861
_c03030
PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241
_c03040
PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800
_c03050
PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799
_c03060
Position (kb) 292
293 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 291.248 kb on + strand at 291.256 kb on - strand at 291.313 kb on - strand at 291.313 kb on - strand at 291.317 kb on + strand at 291.344 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.370 kb on + strand at 291.374 kb on - strand at 291.425 kb on + strand, within PGA1_c03030 at 291.433 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.511 kb on - strand, within PGA1_c03030 at 291.515 kb on + strand, within PGA1_c03030 at 291.523 kb on - strand, within PGA1_c03030 at 291.528 kb on + strand, within PGA1_c03030 at 291.576 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.624 kb on - strand, within PGA1_c03030 at 291.650 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.720 kb on + strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.731 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.784 kb on + strand, within PGA1_c03030 at 291.806 kb on - strand, within PGA1_c03030 at 291.825 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.859 kb on - strand at 291.859 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.893 kb on + strand at 291.898 kb on + strand, within PGA1_c03040 at 291.898 kb on + strand, within PGA1_c03040 at 291.906 kb on - strand, within PGA1_c03040 at 291.918 kb on - strand, within PGA1_c03040 at 291.924 kb on + strand, within PGA1_c03040 at 291.932 kb on + strand, within PGA1_c03040 at 291.940 kb on - strand, within PGA1_c03040 at 291.963 kb on - strand, within PGA1_c03040 at 291.968 kb on - strand, within PGA1_c03040 at 292.007 kb on - strand, within PGA1_c03040 at 292.063 kb on + strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.183 kb on + strand, within PGA1_c03040 at 292.214 kb on + strand at 292.239 kb on - strand at 292.273 kb on + strand at 292.276 kb on - strand at 292.276 kb on - strand at 292.330 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.338 kb on - strand, within PGA1_c03050 at 292.343 kb on - strand, within PGA1_c03050 at 292.365 kb on - strand, within PGA1_c03050 at 292.408 kb on + strand, within PGA1_c03050 at 292.416 kb on - strand, within PGA1_c03050 at 292.425 kb on + strand, within PGA1_c03050 at 292.426 kb on - strand, within PGA1_c03050 at 292.552 kb on + strand, within PGA1_c03050 at 292.602 kb on + strand, within PGA1_c03050 at 292.610 kb on - strand, within PGA1_c03050 at 292.653 kb on - strand, within PGA1_c03050 at 292.763 kb on - strand at 292.887 kb on + strand at 292.898 kb on + strand at 292.898 kb on + strand at 293.003 kb on + strand, within PGA1_c03060 at 293.191 kb on - strand, within PGA1_c03060 at 293.259 kb on + strand, within PGA1_c03060 at 293.259 kb on + strand, within PGA1_c03060 at 293.261 kb on + strand, within PGA1_c03060 at 293.272 kb on + strand, within PGA1_c03060 at 293.280 kb on - strand, within PGA1_c03060 at 293.350 kb on + strand, within PGA1_c03060 at 293.363 kb on - strand, within PGA1_c03060 at 293.419 kb on + strand, within PGA1_c03060 at 293.500 kb on - strand, within PGA1_c03060 at 293.535 kb on - strand, within PGA1_c03060 at 293.553 kb on - strand, within PGA1_c03060 at 293.623 kb on + strand, within PGA1_c03060 at 293.637 kb on - strand, within PGA1_c03060 at 293.641 kb on - strand, within PGA1_c03060 at 293.641 kb on - strand, within PGA1_c03060 at 293.643 kb on + strand, within PGA1_c03060 at 293.651 kb on - strand, within PGA1_c03060 at 293.676 kb on + strand, within PGA1_c03060 at 293.676 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.684 kb on - strand, within PGA1_c03060 at 293.687 kb on - strand, within PGA1_c03060 at 293.790 kb on - strand at 293.794 kb on + strand at 293.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH6.5 remove 291,248 + +2.7 291,256 - +1.3 291,313 - +0.1 291,313 - +0.8 291,317 + +1.0 291,344 + +0.6 291,349 + -0.2 291,349 + +1.0 291,349 + -0.9 291,349 + +1.1 291,349 + -0.4 291,357 - -0.7 291,357 - +0.1 291,357 - +0.9 291,357 - +0.2 291,357 - -0.1 291,357 - +0.5 291,357 - -1.0 291,357 - +1.1 291,357 - -0.4 291,357 - +0.0 291,370 + -1.4 291,374 - -1.2 291,425 + PGA1_c03030 0.18 -0.4 291,433 - PGA1_c03030 0.20 +1.7 291,487 - PGA1_c03030 0.30 -0.6 291,487 - PGA1_c03030 0.30 +1.0 291,511 - PGA1_c03030 0.34 +2.2 291,515 + PGA1_c03030 0.35 -0.8 291,523 - PGA1_c03030 0.37 +0.8 291,528 + PGA1_c03030 0.37 -0.7 291,576 + PGA1_c03030 0.46 +0.9 291,616 + PGA1_c03030 0.54 -0.8 291,616 + PGA1_c03030 0.54 -1.3 291,624 - PGA1_c03030 0.55 -2.3 291,650 + PGA1_c03030 0.60 +0.8 291,710 + PGA1_c03030 0.72 -0.7 291,710 + PGA1_c03030 0.72 -0.6 291,710 + PGA1_c03030 0.72 +1.4 291,710 + PGA1_c03030 0.72 -0.2 291,710 + PGA1_c03030 0.72 -0.3 291,710 + PGA1_c03030 0.72 +0.3 291,710 + PGA1_c03030 0.72 +2.9 291,710 + PGA1_c03030 0.72 +0.3 291,710 + PGA1_c03030 0.72 +0.9 291,710 + PGA1_c03030 0.72 +2.1 291,710 + PGA1_c03030 0.72 -1.4 291,718 - PGA1_c03030 0.73 -0.2 291,718 - PGA1_c03030 0.73 -0.2 291,718 - PGA1_c03030 0.73 -1.1 291,718 - PGA1_c03030 0.73 +0.9 291,718 - PGA1_c03030 0.73 +0.5 291,718 - PGA1_c03030 0.73 -0.7 291,720 + PGA1_c03030 0.73 -0.2 291,728 - PGA1_c03030 0.75 +0.6 291,728 - PGA1_c03030 0.75 +1.1 291,731 + PGA1_c03030 0.75 -0.5 291,752 + PGA1_c03030 0.79 +0.6 291,752 + PGA1_c03030 0.79 +1.2 291,752 + PGA1_c03030 0.79 +0.7 291,752 + PGA1_c03030 0.79 +0.7 291,752 + PGA1_c03030 0.79 +0.9 291,752 + PGA1_c03030 0.79 -0.8 291,760 - PGA1_c03030 0.81 +0.3 291,760 - PGA1_c03030 0.81 +1.5 291,760 - PGA1_c03030 0.81 +1.3 291,760 - PGA1_c03030 0.81 +0.8 291,760 - PGA1_c03030 0.81 -1.9 291,760 - PGA1_c03030 0.81 +0.8 291,760 - PGA1_c03030 0.81 -0.0 291,760 - PGA1_c03030 0.81 +0.7 291,760 - PGA1_c03030 0.81 +1.4 291,760 - PGA1_c03030 0.81 +0.3 291,760 - PGA1_c03030 0.81 -0.7 291,760 - PGA1_c03030 0.81 -1.0 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 +0.1 291,762 + PGA1_c03030 0.81 +0.1 291,762 + PGA1_c03030 0.81 -1.0 291,762 + PGA1_c03030 0.81 -1.8 291,762 + PGA1_c03030 0.81 -0.7 291,762 + PGA1_c03030 0.81 +0.8 291,762 + PGA1_c03030 0.81 -1.2 291,762 + PGA1_c03030 0.81 +0.8 291,762 + PGA1_c03030 0.81 -1.2 291,770 - PGA1_c03030 0.83 -0.8 291,770 - PGA1_c03030 0.83 -0.5 291,770 - PGA1_c03030 0.83 -2.1 291,770 - PGA1_c03030 0.83 +0.8 291,770 - PGA1_c03030 0.83 -0.8 291,770 - PGA1_c03030 0.83 +1.1 291,772 + PGA1_c03030 0.83 +1.6 291,772 + PGA1_c03030 0.83 +2.3 291,780 - PGA1_c03030 0.85 -0.3 291,780 - PGA1_c03030 0.85 +0.5 291,784 + PGA1_c03030 0.85 -1.0 291,806 - PGA1_c03030 0.90 +1.6 291,825 + +0.6 291,851 + +0.1 291,851 + -0.2 291,851 + -1.6 291,856 + -0.6 291,856 + +0.6 291,856 + +0.4 291,856 + +0.1 291,856 + -1.3 291,856 + -0.4 291,859 - +0.7 291,859 - -1.0 291,863 + -1.2 291,864 - -1.0 291,864 - +0.8 291,864 - +0.8 291,864 - +1.4 291,864 - +0.4 291,864 - -0.1 291,864 - +2.0 291,864 - +0.8 291,864 - +0.3 291,864 - +0.9 291,893 + +1.4 291,898 + PGA1_c03040 0.10 +0.3 291,898 + PGA1_c03040 0.10 -0.1 291,906 - PGA1_c03040 0.12 -0.4 291,918 - PGA1_c03040 0.16 -1.6 291,924 + PGA1_c03040 0.17 -1.0 291,932 + PGA1_c03040 0.19 +1.1 291,940 - PGA1_c03040 0.21 -0.3 291,963 - PGA1_c03040 0.27 -0.6 291,968 - PGA1_c03040 0.29 +2.4 292,007 - PGA1_c03040 0.39 -1.0 292,063 + PGA1_c03040 0.53 -1.2 292,093 - PGA1_c03040 0.61 +2.0 292,093 - PGA1_c03040 0.61 -1.1 292,117 + PGA1_c03040 0.67 +0.3 292,117 + PGA1_c03040 0.67 +0.1 292,183 + PGA1_c03040 0.85 +0.8 292,214 + +0.2 292,239 - +1.9 292,273 + -0.6 292,276 - -0.2 292,276 - +0.2 292,330 + PGA1_c03050 0.16 +1.4 292,335 + PGA1_c03050 0.16 +0.2 292,335 + PGA1_c03050 0.16 +0.4 292,335 + PGA1_c03050 0.16 +0.5 292,338 - PGA1_c03050 0.17 +1.6 292,343 - PGA1_c03050 0.18 +1.6 292,365 - PGA1_c03050 0.22 +0.5 292,408 + PGA1_c03050 0.30 +0.8 292,416 - PGA1_c03050 0.31 +1.1 292,425 + PGA1_c03050 0.33 +3.7 292,426 - PGA1_c03050 0.33 -1.3 292,552 + PGA1_c03050 0.55 +1.9 292,602 + PGA1_c03050 0.64 +0.1 292,610 - PGA1_c03050 0.66 +1.4 292,653 - PGA1_c03050 0.73 +0.9 292,763 - -1.2 292,887 + -0.9 292,898 + +1.4 292,898 + +0.7 293,003 + PGA1_c03060 0.20 +1.5 293,191 - PGA1_c03060 0.39 +0.6 293,259 + PGA1_c03060 0.46 +1.1 293,259 + PGA1_c03060 0.46 +0.8 293,261 + PGA1_c03060 0.46 +1.7 293,272 + PGA1_c03060 0.47 +1.0 293,280 - PGA1_c03060 0.48 +1.3 293,350 + PGA1_c03060 0.55 +0.9 293,363 - PGA1_c03060 0.56 +2.3 293,419 + PGA1_c03060 0.62 -1.5 293,500 - PGA1_c03060 0.70 +0.7 293,535 - PGA1_c03060 0.73 -0.1 293,553 - PGA1_c03060 0.75 +0.6 293,623 + PGA1_c03060 0.82 -0.5 293,637 - PGA1_c03060 0.84 -0.1 293,641 - PGA1_c03060 0.84 -0.0 293,641 - PGA1_c03060 0.84 +1.8 293,643 + PGA1_c03060 0.84 -0.5 293,651 - PGA1_c03060 0.85 +2.0 293,676 + PGA1_c03060 0.88 -1.7 293,676 + PGA1_c03060 0.88 +2.3 293,679 + PGA1_c03060 0.88 +0.4 293,679 + PGA1_c03060 0.88 -0.4 293,679 + PGA1_c03060 0.88 +1.1 293,679 + PGA1_c03060 0.88 +0.3 293,679 + PGA1_c03060 0.88 -1.1 293,684 - PGA1_c03060 0.88 -0.8 293,687 - PGA1_c03060 0.89 +0.5 293,790 - -0.9 293,794 + +2.3 293,797 - +0.3
Or see this region's nucleotide sequence