Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08890 and PGA1_c08900 are separated by 96 nucleotides PGA1_c08900 and PGA1_c08910 are separated by 245 nucleotides
PGA1_c08890: PGA1_c08890 - putative capsule polysaccharide export outer membrane protein, at 918,319 to 919,455
_c08890
PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844
_c08900
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 918.607 kb on + strand, within PGA1_c08890 at 918.610 kb on - strand, within PGA1_c08890 at 918.699 kb on + strand, within PGA1_c08890 at 918.712 kb on + strand, within PGA1_c08890 at 918.765 kb on - strand, within PGA1_c08890 at 919.092 kb on + strand, within PGA1_c08890 at 919.095 kb on - strand, within PGA1_c08890 at 919.100 kb on - strand, within PGA1_c08890 at 919.194 kb on - strand, within PGA1_c08890 at 919.220 kb on - strand, within PGA1_c08890 at 919.343 kb on + strand at 919.348 kb on + strand at 919.351 kb on - strand at 919.380 kb on + strand at 919.433 kb on + strand at 919.447 kb on + strand at 919.493 kb on + strand at 919.500 kb on + strand at 919.505 kb on + strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.592 kb on + strand at 919.685 kb on + strand, within PGA1_c08900 at 919.703 kb on - strand, within PGA1_c08900 at 919.713 kb on - strand, within PGA1_c08900 at 919.737 kb on - strand, within PGA1_c08900 at 919.815 kb on - strand, within PGA1_c08900 at 919.950 kb on + strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 920.051 kb on + strand, within PGA1_c08900 at 920.054 kb on - strand, within PGA1_c08900 at 920.110 kb on + strand, within PGA1_c08900 at 920.112 kb on - strand, within PGA1_c08900 at 920.121 kb on + strand, within PGA1_c08900 at 920.129 kb on - strand, within PGA1_c08900 at 920.306 kb on - strand, within PGA1_c08900 at 920.336 kb on - strand, within PGA1_c08900 at 920.369 kb on - strand, within PGA1_c08900 at 920.374 kb on - strand, within PGA1_c08900 at 920.380 kb on - strand, within PGA1_c08900 at 920.540 kb on - strand, within PGA1_c08900 at 920.562 kb on - strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.611 kb on + strand, within PGA1_c08900 at 920.632 kb on - strand, within PGA1_c08900 at 920.651 kb on - strand, within PGA1_c08900 at 920.653 kb on + strand, within PGA1_c08900 at 920.656 kb on - strand, within PGA1_c08900 at 920.661 kb on - strand, within PGA1_c08900 at 920.709 kb on + strand, within PGA1_c08900 at 920.731 kb on + strand at 920.766 kb on + strand at 920.784 kb on - strand at 920.790 kb on + strand at 920.823 kb on + strand at 920.875 kb on + strand at 920.886 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.919 kb on + strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.942 kb on + strand at 920.945 kb on - strand at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 918,607 + PGA1_c08890 0.25 +0.6 918,610 - PGA1_c08890 0.26 +0.3 918,699 + PGA1_c08890 0.33 +0.9 918,712 + PGA1_c08890 0.35 +1.3 918,765 - PGA1_c08890 0.39 +2.4 919,092 + PGA1_c08890 0.68 +1.1 919,095 - PGA1_c08890 0.68 -0.8 919,100 - PGA1_c08890 0.69 +1.8 919,194 - PGA1_c08890 0.77 +1.1 919,220 - PGA1_c08890 0.79 +0.5 919,343 + -0.0 919,348 + +2.4 919,351 - +1.2 919,380 + -0.4 919,433 + -0.1 919,447 + +1.4 919,493 + +0.5 919,500 + +1.3 919,505 + -2.9 919,513 - +0.5 919,513 - -0.0 919,513 - +1.6 919,513 - +2.5 919,513 - +0.2 919,592 + -0.0 919,685 + PGA1_c08900 0.10 -1.7 919,703 - PGA1_c08900 0.12 -0.2 919,713 - PGA1_c08900 0.12 +2.2 919,737 - PGA1_c08900 0.14 -0.0 919,815 - PGA1_c08900 0.20 +1.3 919,950 + PGA1_c08900 0.31 -0.3 919,958 - PGA1_c08900 0.31 -1.9 919,958 - PGA1_c08900 0.31 -2.1 920,051 + PGA1_c08900 0.39 -2.3 920,054 - PGA1_c08900 0.39 -0.1 920,110 + PGA1_c08900 0.43 -3.7 920,112 - PGA1_c08900 0.43 +1.5 920,121 + PGA1_c08900 0.44 +1.4 920,129 - PGA1_c08900 0.45 -1.4 920,306 - PGA1_c08900 0.58 -0.5 920,336 - PGA1_c08900 0.61 -2.6 920,369 - PGA1_c08900 0.63 -0.6 920,374 - PGA1_c08900 0.64 +0.1 920,380 - PGA1_c08900 0.64 -1.8 920,540 - PGA1_c08900 0.76 +0.3 920,562 - PGA1_c08900 0.78 -0.6 920,575 + PGA1_c08900 0.79 -2.8 920,575 + PGA1_c08900 0.79 +0.8 920,583 - PGA1_c08900 0.80 +0.3 920,583 - PGA1_c08900 0.80 -1.7 920,611 + PGA1_c08900 0.82 +1.4 920,632 - PGA1_c08900 0.84 -2.7 920,651 - PGA1_c08900 0.85 +0.0 920,653 + PGA1_c08900 0.85 -2.5 920,656 - PGA1_c08900 0.85 +3.1 920,661 - PGA1_c08900 0.86 -2.6 920,709 + PGA1_c08900 0.89 -0.2 920,731 + -0.4 920,766 + -1.2 920,784 - -0.4 920,790 + +0.1 920,823 + +0.4 920,875 + +0.5 920,886 + +1.6 920,914 + +0.6 920,914 + -0.9 920,914 + +0.4 920,919 + -1.8 920,922 - -0.1 920,922 - -0.3 920,922 - -0.4 920,927 - -0.1 920,927 - +1.6 920,927 - +1.0 920,942 + -1.5 920,945 - +1.0 921,663 - +0.8 921,708 + +0.8 921,708 + -0.9 921,750 + -1.6 921,760 - -0.2 921,839 - -0.7
Or see this region's nucleotide sequence