Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07520 and PGA1_c07530 are separated by 64 nucleotides PGA1_c07530 and PGA1_c07540 are separated by 362 nucleotides PGA1_c07540 and PGA1_c07550 are separated by 182 nucleotides PGA1_c07550 and PGA1_c07560 are separated by 13 nucleotides
PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210
_c07520
PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613
_c07530
PGA1_c07540: PGA1_c07540 - transcription factor carD-like protein, at 778,976 to 779,488
_c07540
PGA1_c07550: PGA1_c07550 - ion channel domain-containing protein, at 779,671 to 780,444
_c07550
PGA1_c07560: PGA1_c07560 - putative cobalamin-5-phosphate synthase, at 780,458 to 781,216
_c07560
Position (kb) 778
779
780 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 778.057 kb on + strand, within PGA1_c07520 at 778.060 kb on - strand, within PGA1_c07520 at 778.150 kb on - strand, within PGA1_c07520 at 778.184 kb on - strand at 778.633 kb on - strand at 778.650 kb on - strand at 778.738 kb on + strand at 779.452 kb on + strand at 779.503 kb on + strand at 779.561 kb on - strand at 779.598 kb on + strand at 779.606 kb on - strand at 779.606 kb on - strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.666 kb on + strand at 779.743 kb on + strand at 779.799 kb on - strand, within PGA1_c07550 at 779.807 kb on + strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.821 kb on + strand, within PGA1_c07550 at 779.871 kb on + strand, within PGA1_c07550 at 779.901 kb on + strand, within PGA1_c07550 at 779.901 kb on + strand, within PGA1_c07550 at 779.967 kb on + strand, within PGA1_c07550 at 779.975 kb on - strand, within PGA1_c07550 at 779.982 kb on - strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.007 kb on + strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.092 kb on + strand, within PGA1_c07550 at 780.094 kb on - strand, within PGA1_c07550 at 780.184 kb on - strand, within PGA1_c07550 at 780.213 kb on - strand, within PGA1_c07550 at 780.218 kb on - strand, within PGA1_c07550 at 780.218 kb on - strand, within PGA1_c07550 at 780.287 kb on + strand, within PGA1_c07550 at 780.347 kb on + strand, within PGA1_c07550 at 780.407 kb on - strand at 780.459 kb on - strand at 780.462 kb on - strand at 780.469 kb on - strand at 780.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 778,057 + PGA1_c07520 0.58 +0.4 778,060 - PGA1_c07520 0.59 +1.0 778,150 - PGA1_c07520 0.83 -3.8 778,184 - +0.2 778,633 - -2.1 778,650 - +0.5 778,738 + +0.8 779,452 + -1.0 779,503 + -0.7 779,561 - -2.6 779,598 + +1.2 779,606 - +1.9 779,606 - +0.2 779,612 + +1.2 779,612 + +0.6 779,612 + -2.8 779,620 - -0.5 779,620 - -1.5 779,620 - -0.2 779,620 - +1.0 779,620 - -0.5 779,666 + +0.1 779,743 + -2.5 779,799 - PGA1_c07550 0.17 -3.5 779,807 + PGA1_c07550 0.18 -0.4 779,815 - PGA1_c07550 0.19 -0.3 779,815 - PGA1_c07550 0.19 +0.5 779,815 - PGA1_c07550 0.19 -0.6 779,815 - PGA1_c07550 0.19 -2.4 779,815 - PGA1_c07550 0.19 +3.3 779,815 - PGA1_c07550 0.19 +0.5 779,821 + PGA1_c07550 0.19 -1.1 779,871 + PGA1_c07550 0.26 +0.9 779,901 + PGA1_c07550 0.30 +1.1 779,901 + PGA1_c07550 0.30 +0.5 779,967 + PGA1_c07550 0.38 +1.6 779,975 - PGA1_c07550 0.39 -3.3 779,982 - PGA1_c07550 0.40 +1.8 780,002 + PGA1_c07550 0.43 -0.9 780,002 + PGA1_c07550 0.43 -1.5 780,002 + PGA1_c07550 0.43 -0.1 780,002 + PGA1_c07550 0.43 +0.8 780,002 + PGA1_c07550 0.43 -1.7 780,002 + PGA1_c07550 0.43 +1.8 780,007 + PGA1_c07550 0.43 -1.1 780,010 - PGA1_c07550 0.44 +0.6 780,010 - PGA1_c07550 0.44 -0.7 780,010 - PGA1_c07550 0.44 -2.1 780,010 - PGA1_c07550 0.44 +0.3 780,092 + PGA1_c07550 0.54 -2.2 780,094 - PGA1_c07550 0.55 -3.1 780,184 - PGA1_c07550 0.66 -0.3 780,213 - PGA1_c07550 0.70 -1.0 780,218 - PGA1_c07550 0.71 -3.5 780,218 - PGA1_c07550 0.71 +0.4 780,287 + PGA1_c07550 0.80 -2.4 780,347 + PGA1_c07550 0.87 -3.1 780,407 - +0.6 780,459 - +0.6 780,462 - -1.2 780,469 - +0.1 780,477 + +1.5
Or see this region's nucleotide sequence