Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07400

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07390 and PGA1_c07400 overlap by 4 nucleotidesPGA1_c07400 and PGA1_c07410 overlap by 1 nucleotides PGA1_c07390: PGA1_c07390 - alpha-galactosidase RafA, at 761,587 to 763,686 _c07390 PGA1_c07400: PGA1_c07400 - binding protein dependent transport system permease, at 763,683 to 764,531 _c07400 PGA1_c07410: PGA1_c07410 - binding protein dependent transport system permease, at 764,531 to 765,478 _c07410 Position (kb) 763 764 765Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 762.692 kb on - strand, within PGA1_c07390at 762.693 kb on + strand, within PGA1_c07390at 762.739 kb on + strand, within PGA1_c07390at 762.803 kb on + strand, within PGA1_c07390at 762.803 kb on + strand, within PGA1_c07390at 762.803 kb on + strand, within PGA1_c07390at 762.803 kb on + strand, within PGA1_c07390at 762.803 kb on + strand, within PGA1_c07390at 762.811 kb on - strand, within PGA1_c07390at 762.811 kb on - strand, within PGA1_c07390at 762.811 kb on - strand, within PGA1_c07390at 762.811 kb on - strand, within PGA1_c07390at 762.811 kb on - strand, within PGA1_c07390at 762.811 kb on - strand, within PGA1_c07390at 762.895 kb on - strand, within PGA1_c07390at 762.895 kb on - strand, within PGA1_c07390at 762.895 kb on - strand, within PGA1_c07390at 762.900 kb on - strand, within PGA1_c07390at 763.009 kb on - strand, within PGA1_c07390at 763.026 kb on - strand, within PGA1_c07390at 763.043 kb on - strand, within PGA1_c07390at 763.045 kb on + strand, within PGA1_c07390at 763.069 kb on + strand, within PGA1_c07390at 763.112 kb on - strand, within PGA1_c07390at 763.135 kb on + strand, within PGA1_c07390at 763.143 kb on - strand, within PGA1_c07390at 763.143 kb on - strand, within PGA1_c07390at 763.204 kb on + strand, within PGA1_c07390at 763.204 kb on + strand, within PGA1_c07390at 763.204 kb on + strand, within PGA1_c07390at 763.204 kb on + strand, within PGA1_c07390at 763.212 kb on - strand, within PGA1_c07390at 763.212 kb on - strand, within PGA1_c07390at 763.212 kb on - strand, within PGA1_c07390at 763.239 kb on + strand, within PGA1_c07390at 763.265 kb on - strand, within PGA1_c07390at 763.285 kb on + strand, within PGA1_c07390at 763.293 kb on - strand, within PGA1_c07390at 763.293 kb on - strand, within PGA1_c07390at 763.293 kb on - strand, within PGA1_c07390at 763.359 kb on + strand, within PGA1_c07390at 763.360 kb on + strand, within PGA1_c07390at 763.367 kb on - strand, within PGA1_c07390at 763.374 kb on - strand, within PGA1_c07390at 763.379 kb on - strand, within PGA1_c07390at 763.413 kb on - strand, within PGA1_c07390at 763.519 kb on + strandat 763.694 kb on - strandat 763.704 kb on - strandat 763.782 kb on + strand, within PGA1_c07400at 763.782 kb on + strand, within PGA1_c07400at 763.782 kb on + strand, within PGA1_c07400at 763.806 kb on - strand, within PGA1_c07400at 763.829 kb on - strand, within PGA1_c07400at 763.845 kb on + strand, within PGA1_c07400at 763.941 kb on - strand, within PGA1_c07400at 763.944 kb on + strand, within PGA1_c07400at 763.952 kb on - strand, within PGA1_c07400at 763.957 kb on + strand, within PGA1_c07400at 763.992 kb on - strand, within PGA1_c07400at 763.999 kb on + strand, within PGA1_c07400at 764.046 kb on - strand, within PGA1_c07400at 764.048 kb on - strand, within PGA1_c07400at 764.084 kb on + strand, within PGA1_c07400at 764.084 kb on + strand, within PGA1_c07400at 764.236 kb on - strand, within PGA1_c07400at 764.236 kb on - strand, within PGA1_c07400at 764.236 kb on - strand, within PGA1_c07400at 764.242 kb on + strand, within PGA1_c07400at 764.242 kb on + strand, within PGA1_c07400at 764.247 kb on + strand, within PGA1_c07400at 764.247 kb on + strand, within PGA1_c07400at 764.247 kb on + strand, within PGA1_c07400at 764.247 kb on + strand, within PGA1_c07400at 764.247 kb on + strand, within PGA1_c07400at 764.250 kb on - strand, within PGA1_c07400at 764.252 kb on + strand, within PGA1_c07400at 764.255 kb on - strand, within PGA1_c07400at 764.255 kb on - strand, within PGA1_c07400at 764.255 kb on - strand, within PGA1_c07400at 764.283 kb on + strand, within PGA1_c07400at 764.288 kb on + strand, within PGA1_c07400at 764.288 kb on + strand, within PGA1_c07400at 764.288 kb on + strand, within PGA1_c07400at 764.288 kb on + strand, within PGA1_c07400at 764.291 kb on - strand, within PGA1_c07400at 764.293 kb on + strand, within PGA1_c07400at 764.296 kb on - strand, within PGA1_c07400at 764.296 kb on - strand, within PGA1_c07400at 764.354 kb on + strand, within PGA1_c07400at 764.354 kb on + strand, within PGA1_c07400at 764.354 kb on + strand, within PGA1_c07400at 764.354 kb on + strand, within PGA1_c07400at 764.357 kb on + strand, within PGA1_c07400at 764.357 kb on + strand, within PGA1_c07400at 764.357 kb on + strand, within PGA1_c07400at 764.362 kb on - strand, within PGA1_c07400at 764.365 kb on - strand, within PGA1_c07400at 764.372 kb on + strand, within PGA1_c07400at 764.372 kb on + strand, within PGA1_c07400at 764.372 kb on + strand, within PGA1_c07400at 764.372 kb on + strand, within PGA1_c07400at 764.372 kb on + strand, within PGA1_c07400at 764.372 kb on + strand, within PGA1_c07400at 764.372 kb on + strand, within PGA1_c07400at 764.380 kb on - strand, within PGA1_c07400at 764.380 kb on - strand, within PGA1_c07400at 764.380 kb on - strand, within PGA1_c07400at 764.380 kb on - strand, within PGA1_c07400at 764.380 kb on - strand, within PGA1_c07400at 764.380 kb on - strand, within PGA1_c07400at 764.382 kb on + strand, within PGA1_c07400at 764.382 kb on - strand, within PGA1_c07400at 764.389 kb on - strand, within PGA1_c07400at 764.474 kb on + strandat 764.477 kb on + strandat 764.493 kb on - strandat 764.508 kb on + strandat 764.508 kb on + strandat 764.516 kb on - strandat 764.537 kb on - strandat 764.549 kb on - strandat 764.580 kb on + strandat 764.608 kb on - strandat 764.624 kb on + strandat 764.630 kb on + strand, within PGA1_c07410at 764.632 kb on - strand, within PGA1_c07410at 764.632 kb on - strand, within PGA1_c07410at 764.705 kb on + strand, within PGA1_c07410at 764.739 kb on - strand, within PGA1_c07410at 764.840 kb on + strand, within PGA1_c07410at 764.853 kb on + strand, within PGA1_c07410at 764.853 kb on + strand, within PGA1_c07410at 764.853 kb on + strand, within PGA1_c07410at 764.861 kb on - strand, within PGA1_c07410at 764.861 kb on - strand, within PGA1_c07410at 764.863 kb on + strand, within PGA1_c07410at 764.863 kb on + strand, within PGA1_c07410at 764.878 kb on + strand, within PGA1_c07410at 764.893 kb on + strand, within PGA1_c07410at 764.922 kb on + strand, within PGA1_c07410at 764.969 kb on + strand, within PGA1_c07410at 764.977 kb on - strand, within PGA1_c07410at 764.981 kb on + strand, within PGA1_c07410at 764.986 kb on + strand, within PGA1_c07410at 764.986 kb on + strand, within PGA1_c07410at 764.986 kb on + strand, within PGA1_c07410at 764.991 kb on + strand, within PGA1_c07410at 764.991 kb on + strand, within PGA1_c07410at 764.994 kb on - strand, within PGA1_c07410at 764.994 kb on - strand, within PGA1_c07410at 764.994 kb on - strand, within PGA1_c07410at 764.994 kb on - strand, within PGA1_c07410at 764.994 kb on - strand, within PGA1_c07410at 764.994 kb on - strand, within PGA1_c07410at 764.999 kb on - strand, within PGA1_c07410at 764.999 kb on - strand, within PGA1_c07410at 765.000 kb on - strand, within PGA1_c07410at 765.002 kb on + strand, within PGA1_c07410at 765.005 kb on - strand, within PGA1_c07410at 765.010 kb on - strand, within PGA1_c07410at 765.010 kb on - strand, within PGA1_c07410at 765.020 kb on - strand, within PGA1_c07410at 765.037 kb on + strand, within PGA1_c07410at 765.112 kb on + strand, within PGA1_c07410at 765.120 kb on - strand, within PGA1_c07410at 765.123 kb on + strand, within PGA1_c07410at 765.131 kb on - strand, within PGA1_c07410at 765.147 kb on + strand, within PGA1_c07410at 765.155 kb on - strand, within PGA1_c07410at 765.155 kb on - strand, within PGA1_c07410at 765.160 kb on - strand, within PGA1_c07410at 765.162 kb on + strand, within PGA1_c07410at 765.182 kb on + strand, within PGA1_c07410at 765.211 kb on - strand, within PGA1_c07410at 765.211 kb on - strand, within PGA1_c07410at 765.225 kb on - strand, within PGA1_c07410at 765.261 kb on + strand, within PGA1_c07410at 765.283 kb on + strand, within PGA1_c07410at 765.286 kb on - strand, within PGA1_c07410at 765.291 kb on - strand, within PGA1_c07410at 765.291 kb on - strand, within PGA1_c07410at 765.307 kb on + strand, within PGA1_c07410at 765.307 kb on + strand, within PGA1_c07410at 765.307 kb on + strand, within PGA1_c07410at 765.315 kb on - strand, within PGA1_c07410at 765.315 kb on - strand, within PGA1_c07410at 765.315 kb on - strand, within PGA1_c07410at 765.353 kb on + strand, within PGA1_c07410at 765.390 kb on - strandat 765.462 kb on + strandat 765.472 kb on - strandat 765.478 kb on + strandat 765.530 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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762,692 - PGA1_c07390 0.53 -0.7
762,693 + PGA1_c07390 0.53 -0.2
762,739 + PGA1_c07390 0.55 +0.4
762,803 + PGA1_c07390 0.58 +0.9
762,803 + PGA1_c07390 0.58 +1.7
762,803 + PGA1_c07390 0.58 +0.6
762,803 + PGA1_c07390 0.58 +0.5
762,803 + PGA1_c07390 0.58 -1.8
762,811 - PGA1_c07390 0.58 +0.4
762,811 - PGA1_c07390 0.58 +0.5
762,811 - PGA1_c07390 0.58 -3.0
762,811 - PGA1_c07390 0.58 -2.9
762,811 - PGA1_c07390 0.58 -0.1
762,811 - PGA1_c07390 0.58 -3.1
762,895 - PGA1_c07390 0.62 +1.3
762,895 - PGA1_c07390 0.62 -1.8
762,895 - PGA1_c07390 0.62 +0.5
762,900 - PGA1_c07390 0.63 +0.7
763,009 - PGA1_c07390 0.68 -1.0
763,026 - PGA1_c07390 0.69 -0.5
763,043 - PGA1_c07390 0.69 +0.5
763,045 + PGA1_c07390 0.69 -2.0
763,069 + PGA1_c07390 0.71 -0.5
763,112 - PGA1_c07390 0.73 +1.9
763,135 + PGA1_c07390 0.74 +0.7
763,143 - PGA1_c07390 0.74 +1.6
763,143 - PGA1_c07390 0.74 -1.3
763,204 + PGA1_c07390 0.77 +0.6
763,204 + PGA1_c07390 0.77 -3.1
763,204 + PGA1_c07390 0.77 -1.6
763,204 + PGA1_c07390 0.77 -0.0
763,212 - PGA1_c07390 0.77 -1.5
763,212 - PGA1_c07390 0.77 +0.5
763,212 - PGA1_c07390 0.77 -2.9
763,239 + PGA1_c07390 0.79 -2.9
763,265 - PGA1_c07390 0.80 +1.2
763,285 + PGA1_c07390 0.81 +0.7
763,293 - PGA1_c07390 0.81 +1.0
763,293 - PGA1_c07390 0.81 +2.7
763,293 - PGA1_c07390 0.81 +0.9
763,359 + PGA1_c07390 0.84 -1.3
763,360 + PGA1_c07390 0.84 +0.4
763,367 - PGA1_c07390 0.85 +0.5
763,374 - PGA1_c07390 0.85 -2.7
763,379 - PGA1_c07390 0.85 -0.7
763,413 - PGA1_c07390 0.87 -0.2
763,519 + -2.8
763,694 - +2.4
763,704 - -0.7
763,782 + PGA1_c07400 0.12 -1.0
763,782 + PGA1_c07400 0.12 +1.3
763,782 + PGA1_c07400 0.12 -0.8
763,806 - PGA1_c07400 0.14 +1.4
763,829 - PGA1_c07400 0.17 -1.4
763,845 + PGA1_c07400 0.19 -1.0
763,941 - PGA1_c07400 0.30 -0.7
763,944 + PGA1_c07400 0.31 +0.6
763,952 - PGA1_c07400 0.32 -0.6
763,957 + PGA1_c07400 0.32 +1.7
763,992 - PGA1_c07400 0.36 +1.0
763,999 + PGA1_c07400 0.37 -0.3
764,046 - PGA1_c07400 0.43 -0.4
764,048 - PGA1_c07400 0.43 -0.5
764,084 + PGA1_c07400 0.47 -0.9
764,084 + PGA1_c07400 0.47 -0.6
764,236 - PGA1_c07400 0.65 +0.2
764,236 - PGA1_c07400 0.65 -3.2
764,236 - PGA1_c07400 0.65 -0.9
764,242 + PGA1_c07400 0.66 -2.9
764,242 + PGA1_c07400 0.66 +0.4
764,247 + PGA1_c07400 0.66 -0.9
764,247 + PGA1_c07400 0.66 -1.6
764,247 + PGA1_c07400 0.66 +1.4
764,247 + PGA1_c07400 0.66 -1.7
764,247 + PGA1_c07400 0.66 +0.8
764,250 - PGA1_c07400 0.67 +1.3
764,252 + PGA1_c07400 0.67 +0.6
764,255 - PGA1_c07400 0.67 -1.2
764,255 - PGA1_c07400 0.67 -2.0
764,255 - PGA1_c07400 0.67 +0.9
764,283 + PGA1_c07400 0.71 +0.5
764,288 + PGA1_c07400 0.71 -1.0
764,288 + PGA1_c07400 0.71 -1.5
764,288 + PGA1_c07400 0.71 +0.6
764,288 + PGA1_c07400 0.71 +0.0
764,291 - PGA1_c07400 0.72 -2.3
764,293 + PGA1_c07400 0.72 -1.0
764,296 - PGA1_c07400 0.72 +1.9
764,296 - PGA1_c07400 0.72 +2.0
764,354 + PGA1_c07400 0.79 +0.8
764,354 + PGA1_c07400 0.79 +1.2
764,354 + PGA1_c07400 0.79 -3.1
764,354 + PGA1_c07400 0.79 +0.3
764,357 + PGA1_c07400 0.79 +0.8
764,357 + PGA1_c07400 0.79 +0.6
764,357 + PGA1_c07400 0.79 -0.8
764,362 - PGA1_c07400 0.80 -2.7
764,365 - PGA1_c07400 0.80 -1.0
764,372 + PGA1_c07400 0.81 -1.0
764,372 + PGA1_c07400 0.81 -0.3
764,372 + PGA1_c07400 0.81 +1.6
764,372 + PGA1_c07400 0.81 -0.9
764,372 + PGA1_c07400 0.81 -0.5
764,372 + PGA1_c07400 0.81 +0.3
764,372 + PGA1_c07400 0.81 -1.5
764,380 - PGA1_c07400 0.82 -0.7
764,380 - PGA1_c07400 0.82 -3.6
764,380 - PGA1_c07400 0.82 +1.5
764,380 - PGA1_c07400 0.82 -0.2
764,380 - PGA1_c07400 0.82 -4.3
764,380 - PGA1_c07400 0.82 -0.7
764,382 + PGA1_c07400 0.82 +0.5
764,382 - PGA1_c07400 0.82 -1.6
764,389 - PGA1_c07400 0.83 -1.0
764,474 + +1.2
764,477 + +0.6
764,493 - -2.8
764,508 + -0.8
764,508 + +0.0
764,516 - +0.7
764,537 - -1.5
764,549 - -2.7
764,580 + -0.1
764,608 - +1.6
764,624 + -0.5
764,630 + PGA1_c07410 0.10 +0.7
764,632 - PGA1_c07410 0.11 -0.4
764,632 - PGA1_c07410 0.11 -1.3
764,705 + PGA1_c07410 0.18 -2.3
764,739 - PGA1_c07410 0.22 -0.0
764,840 + PGA1_c07410 0.33 +1.7
764,853 + PGA1_c07410 0.34 +1.6
764,853 + PGA1_c07410 0.34 -2.4
764,853 + PGA1_c07410 0.34 -0.7
764,861 - PGA1_c07410 0.35 -1.0
764,861 - PGA1_c07410 0.35 -1.9
764,863 + PGA1_c07410 0.35 +2.6
764,863 + PGA1_c07410 0.35 +0.3
764,878 + PGA1_c07410 0.37 +0.1
764,893 + PGA1_c07410 0.38 -1.2
764,922 + PGA1_c07410 0.41 -2.0
764,969 + PGA1_c07410 0.46 +1.5
764,977 - PGA1_c07410 0.47 -1.1
764,981 + PGA1_c07410 0.47 -1.7
764,986 + PGA1_c07410 0.48 -0.6
764,986 + PGA1_c07410 0.48 +1.1
764,986 + PGA1_c07410 0.48 -2.5
764,991 + PGA1_c07410 0.49 -1.7
764,991 + PGA1_c07410 0.49 -1.1
764,994 - PGA1_c07410 0.49 -2.0
764,994 - PGA1_c07410 0.49 -0.2
764,994 - PGA1_c07410 0.49 -0.7
764,994 - PGA1_c07410 0.49 +0.7
764,994 - PGA1_c07410 0.49 -1.3
764,994 - PGA1_c07410 0.49 -1.8
764,999 - PGA1_c07410 0.49 -0.0
764,999 - PGA1_c07410 0.49 -0.0
765,000 - PGA1_c07410 0.49 +1.9
765,002 + PGA1_c07410 0.50 +0.9
765,005 - PGA1_c07410 0.50 +0.5
765,010 - PGA1_c07410 0.51 -0.5
765,010 - PGA1_c07410 0.51 -2.5
765,020 - PGA1_c07410 0.52 -1.9
765,037 + PGA1_c07410 0.53 +0.0
765,112 + PGA1_c07410 0.61 -1.0
765,120 - PGA1_c07410 0.62 +0.4
765,123 + PGA1_c07410 0.62 +1.1
765,131 - PGA1_c07410 0.63 -0.1
765,147 + PGA1_c07410 0.65 -0.2
765,155 - PGA1_c07410 0.66 +0.6
765,155 - PGA1_c07410 0.66 -0.1
765,160 - PGA1_c07410 0.66 +0.1
765,162 + PGA1_c07410 0.67 -1.8
765,182 + PGA1_c07410 0.69 -1.0
765,211 - PGA1_c07410 0.72 -2.5
765,211 - PGA1_c07410 0.72 -1.3
765,225 - PGA1_c07410 0.73 -0.3
765,261 + PGA1_c07410 0.77 -0.9
765,283 + PGA1_c07410 0.79 -1.2
765,286 - PGA1_c07410 0.80 +1.6
765,291 - PGA1_c07410 0.80 -0.3
765,291 - PGA1_c07410 0.80 +1.8
765,307 + PGA1_c07410 0.82 -3.2
765,307 + PGA1_c07410 0.82 -0.0
765,307 + PGA1_c07410 0.82 +1.0
765,315 - PGA1_c07410 0.83 +2.2
765,315 - PGA1_c07410 0.83 -2.9
765,315 - PGA1_c07410 0.83 -0.4
765,353 + PGA1_c07410 0.87 +1.2
765,390 - +0.7
765,462 + +0.9
765,472 - -0.0
765,478 + +1.5
765,530 - +0.2

Or see this region's nucleotide sequence