Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_612 and HP15_613 are separated by 443 nucleotides HP15_613 and HP15_614 are separated by 114 nucleotides HP15_614 and HP15_615 are separated by 89 nucleotides
HP15_612: HP15_612 - unusual protein kinase, at 632,489 to 633,934
_612
HP15_613: HP15_613 - methyl-accepting chemotaxis sensory transducer, at 634,378 to 636,504
_613
HP15_614: HP15_614 - protein containing glutaredoxin domain, at 636,619 to 636,879
_614
HP15_615: HP15_615 - 6-phosphofructokinase, at 636,969 to 638,231
_615
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -1
0
1 at 633.419 kb on + strand, within HP15_612 at 633.419 kb on + strand, within HP15_612 at 633.460 kb on + strand, within HP15_612 at 633.463 kb on - strand, within HP15_612 at 633.879 kb on - strand at 633.922 kb on - strand at 634.166 kb on + strand at 634.170 kb on + strand at 634.178 kb on + strand at 634.217 kb on + strand at 634.225 kb on - strand at 634.225 kb on - strand at 634.356 kb on - strand at 634.420 kb on - strand at 634.483 kb on + strand at 634.508 kb on + strand at 634.519 kb on + strand at 634.527 kb on - strand at 634.545 kb on - strand at 634.655 kb on + strand, within HP15_613 at 634.691 kb on + strand, within HP15_613 at 634.740 kb on - strand, within HP15_613 at 634.790 kb on + strand, within HP15_613 at 634.956 kb on + strand, within HP15_613 at 635.009 kb on + strand, within HP15_613 at 635.012 kb on - strand, within HP15_613 at 635.012 kb on - strand, within HP15_613 at 635.239 kb on + strand, within HP15_613 at 635.318 kb on - strand, within HP15_613 at 635.342 kb on - strand, within HP15_613 at 635.769 kb on - strand, within HP15_613 at 635.769 kb on - strand, within HP15_613 at 635.863 kb on + strand, within HP15_613 at 635.887 kb on - strand, within HP15_613 at 635.946 kb on + strand, within HP15_613 at 636.115 kb on + strand, within HP15_613 at 636.122 kb on - strand, within HP15_613 at 636.187 kb on + strand, within HP15_613 at 636.442 kb on + strand at 636.456 kb on - strand at 636.461 kb on - strand at 636.500 kb on - strand at 636.702 kb on + strand, within HP15_614 at 636.777 kb on + strand, within HP15_614 at 636.860 kb on + strand at 636.912 kb on + strand at 636.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 633,419 + HP15_612 0.64 -0.2 633,419 + HP15_612 0.64 -0.1 633,460 + HP15_612 0.67 +0.3 633,463 - HP15_612 0.67 -0.4 633,879 - -0.8 633,922 - +0.7 634,166 + -0.8 634,170 + -1.0 634,178 + -0.3 634,217 + +0.3 634,225 - +0.1 634,225 - +0.6 634,356 - -0.2 634,420 - -0.1 634,483 + -0.8 634,508 + -0.4 634,519 + +0.0 634,527 - -0.2 634,545 - +0.7 634,655 + HP15_613 0.13 -0.4 634,691 + HP15_613 0.15 +1.3 634,740 - HP15_613 0.17 -0.7 634,790 + HP15_613 0.19 +0.5 634,956 + HP15_613 0.27 +0.3 635,009 + HP15_613 0.30 +1.0 635,012 - HP15_613 0.30 +1.7 635,012 - HP15_613 0.30 +1.1 635,239 + HP15_613 0.40 -0.2 635,318 - HP15_613 0.44 -0.3 635,342 - HP15_613 0.45 -0.1 635,769 - HP15_613 0.65 -0.0 635,769 - HP15_613 0.65 -0.1 635,863 + HP15_613 0.70 +0.8 635,887 - HP15_613 0.71 -0.3 635,946 + HP15_613 0.74 +0.3 636,115 + HP15_613 0.82 +0.8 636,122 - HP15_613 0.82 +0.1 636,187 + HP15_613 0.85 +0.5 636,442 + +0.1 636,456 - +0.3 636,461 - +0.0 636,500 - +0.1 636,702 + HP15_614 0.32 +0.1 636,777 + HP15_614 0.61 +0.2 636,860 + -0.3 636,912 + -0.8 636,928 - -0.2
Or see this region's nucleotide sequence