Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05600

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05590 and PGA1_c05600 are separated by 261 nucleotidesPGA1_c05600 and PGA1_c05610 overlap by 1 nucleotidesPGA1_c05610 and PGA1_c05620 overlap by 4 nucleotides PGA1_c05590: PGA1_c05590 - acyl-CoA dehydrogenase-like protein, at 572,698 to 573,936 _c05590 PGA1_c05600: PGA1_c05600 - queuosine biosynthesis protein QueC, at 574,198 to 574,896 _c05600 PGA1_c05610: PGA1_c05610 - putative queuosine biosynthesis protein QueD, at 574,896 to 575,249 _c05610 PGA1_c05620: PGA1_c05620 - putative 7-cyano-7-deazaguanosine biosynthesis protein QueE, at 575,246 to 576,043 _c05620 Position (kb) 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 573.247 kb on + strand, within PGA1_c05590at 573.361 kb on - strand, within PGA1_c05590at 573.389 kb on + strand, within PGA1_c05590at 573.390 kb on - strand, within PGA1_c05590at 573.407 kb on + strand, within PGA1_c05590at 573.407 kb on + strand, within PGA1_c05590at 573.415 kb on - strand, within PGA1_c05590at 573.430 kb on + strand, within PGA1_c05590at 573.430 kb on + strand, within PGA1_c05590at 573.430 kb on + strand, within PGA1_c05590at 573.430 kb on + strand, within PGA1_c05590at 573.482 kb on - strand, within PGA1_c05590at 573.487 kb on - strand, within PGA1_c05590at 573.525 kb on + strand, within PGA1_c05590at 573.544 kb on - strand, within PGA1_c05590at 573.662 kb on + strand, within PGA1_c05590at 573.704 kb on + strand, within PGA1_c05590at 573.706 kb on + strand, within PGA1_c05590at 573.720 kb on - strand, within PGA1_c05590at 573.726 kb on + strand, within PGA1_c05590at 573.734 kb on - strand, within PGA1_c05590at 573.734 kb on - strand, within PGA1_c05590at 573.739 kb on + strand, within PGA1_c05590at 573.760 kb on - strand, within PGA1_c05590at 573.783 kb on - strand, within PGA1_c05590at 573.825 kb on + strandat 573.825 kb on + strandat 573.833 kb on - strandat 573.833 kb on - strandat 573.833 kb on - strandat 573.834 kb on - strandat 573.864 kb on + strandat 573.879 kb on + strandat 573.918 kb on - strandat 573.999 kb on + strandat 573.999 kb on + strandat 573.999 kb on + strandat 574.007 kb on - strandat 574.025 kb on - strandat 574.080 kb on + strandat 574.080 kb on + strandat 574.088 kb on - strandat 574.088 kb on - strandat 574.088 kb on - strandat 574.088 kb on - strandat 574.093 kb on - strandat 574.094 kb on - strandat 574.094 kb on - strandat 574.135 kb on - strandat 574.152 kb on + strandat 574.153 kb on - strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.272 kb on + strand, within PGA1_c05600at 574.295 kb on + strand, within PGA1_c05600at 574.295 kb on + strand, within PGA1_c05600at 574.295 kb on + strand, within PGA1_c05600at 574.357 kb on - strand, within PGA1_c05600at 574.448 kb on + strand, within PGA1_c05600at 574.451 kb on - strand, within PGA1_c05600at 574.467 kb on + strand, within PGA1_c05600at 574.467 kb on + strand, within PGA1_c05600at 574.467 kb on + strand, within PGA1_c05600at 574.474 kb on + strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.533 kb on + strand, within PGA1_c05600at 574.533 kb on + strand, within PGA1_c05600at 574.566 kb on - strand, within PGA1_c05600at 574.582 kb on + strand, within PGA1_c05600at 574.600 kb on + strand, within PGA1_c05600at 574.604 kb on + strand, within PGA1_c05600at 574.657 kb on - strand, within PGA1_c05600at 574.672 kb on + strand, within PGA1_c05600at 574.693 kb on + strand, within PGA1_c05600at 574.760 kb on - strand, within PGA1_c05600at 574.768 kb on + strand, within PGA1_c05600at 574.803 kb on + strand, within PGA1_c05600at 574.852 kb on + strandat 574.988 kb on + strand, within PGA1_c05610at 575.012 kb on + strand, within PGA1_c05610at 575.017 kb on + strand, within PGA1_c05610at 575.022 kb on + strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.035 kb on - strand, within PGA1_c05610at 575.059 kb on + strand, within PGA1_c05610at 575.106 kb on + strand, within PGA1_c05610at 575.124 kb on - strand, within PGA1_c05610at 575.139 kb on + strand, within PGA1_c05610at 575.139 kb on + strand, within PGA1_c05610at 575.139 kb on + strand, within PGA1_c05610at 575.147 kb on - strand, within PGA1_c05610at 575.147 kb on - strand, within PGA1_c05610at 575.187 kb on + strand, within PGA1_c05610at 575.237 kb on + strandat 575.322 kb on + strandat 575.377 kb on + strand, within PGA1_c05620at 575.408 kb on + strand, within PGA1_c05620at 575.432 kb on + strand, within PGA1_c05620at 575.433 kb on - strand, within PGA1_c05620at 575.465 kb on - strand, within PGA1_c05620at 575.465 kb on - strand, within PGA1_c05620at 575.520 kb on + strand, within PGA1_c05620at 575.520 kb on + strand, within PGA1_c05620at 575.525 kb on + strand, within PGA1_c05620at 575.617 kb on + strand, within PGA1_c05620at 575.617 kb on + strand, within PGA1_c05620at 575.617 kb on + strand, within PGA1_c05620at 575.651 kb on + strand, within PGA1_c05620at 575.671 kb on + strand, within PGA1_c05620at 575.684 kb on - strand, within PGA1_c05620at 575.702 kb on - strand, within PGA1_c05620at 575.761 kb on + strand, within PGA1_c05620at 575.761 kb on + strand, within PGA1_c05620at 575.779 kb on - strand, within PGA1_c05620at 575.822 kb on + strand, within PGA1_c05620at 575.884 kb on + strand, within PGA1_c05620at 575.890 kb on + strand, within PGA1_c05620

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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573,247 + PGA1_c05590 0.44 +0.3
573,361 - PGA1_c05590 0.54 +0.8
573,389 + PGA1_c05590 0.56 +2.3
573,390 - PGA1_c05590 0.56 -0.5
573,407 + PGA1_c05590 0.57 +1.5
573,407 + PGA1_c05590 0.57 +0.6
573,415 - PGA1_c05590 0.58 +0.9
573,430 + PGA1_c05590 0.59 -2.6
573,430 + PGA1_c05590 0.59 +2.2
573,430 + PGA1_c05590 0.59 +0.3
573,430 + PGA1_c05590 0.59 -0.5
573,482 - PGA1_c05590 0.63 -1.9
573,487 - PGA1_c05590 0.64 +1.1
573,525 + PGA1_c05590 0.67 +1.5
573,544 - PGA1_c05590 0.68 -1.9
573,662 + PGA1_c05590 0.78 +2.8
573,704 + PGA1_c05590 0.81 +0.7
573,706 + PGA1_c05590 0.81 +0.7
573,720 - PGA1_c05590 0.82 -1.2
573,726 + PGA1_c05590 0.83 +1.6
573,734 - PGA1_c05590 0.84 -2.6
573,734 - PGA1_c05590 0.84 -0.1
573,739 + PGA1_c05590 0.84 +1.2
573,760 - PGA1_c05590 0.86 -1.3
573,783 - PGA1_c05590 0.88 +0.7
573,825 + +1.5
573,825 + +2.3
573,833 - +1.2
573,833 - -0.1
573,833 - -0.5
573,834 - +1.8
573,864 + +2.7
573,879 + -0.5
573,918 - -0.5
573,999 + +1.7
573,999 + +2.3
573,999 + +0.3
574,007 - +1.7
574,025 - +1.5
574,080 + +2.0
574,080 + -0.3
574,088 - -1.1
574,088 - +0.3
574,088 - +0.0
574,088 - -0.9
574,093 - +2.5
574,094 - -0.9
574,094 - +0.8
574,135 - +2.5
574,152 + -0.9
574,153 - -0.5
574,215 - +0.4
574,215 - +1.0
574,272 + PGA1_c05600 0.11 -1.5
574,295 + PGA1_c05600 0.14 +0.5
574,295 + PGA1_c05600 0.14 -1.5
574,295 + PGA1_c05600 0.14 +0.5
574,357 - PGA1_c05600 0.23 +0.9
574,448 + PGA1_c05600 0.36 +1.5
574,451 - PGA1_c05600 0.36 +0.2
574,467 + PGA1_c05600 0.38 +0.4
574,467 + PGA1_c05600 0.38 +1.9
574,467 + PGA1_c05600 0.38 +1.6
574,474 + PGA1_c05600 0.39 +1.4
574,475 - PGA1_c05600 0.40 +1.1
574,475 - PGA1_c05600 0.40 -0.7
574,475 - PGA1_c05600 0.40 +1.5
574,475 - PGA1_c05600 0.40 +0.5
574,533 + PGA1_c05600 0.48 -2.5
574,533 + PGA1_c05600 0.48 +0.0
574,566 - PGA1_c05600 0.53 +0.6
574,582 + PGA1_c05600 0.55 +2.0
574,600 + PGA1_c05600 0.58 -2.7
574,604 + PGA1_c05600 0.58 +1.7
574,657 - PGA1_c05600 0.66 +1.0
574,672 + PGA1_c05600 0.68 +0.9
574,693 + PGA1_c05600 0.71 +1.5
574,760 - PGA1_c05600 0.80 +0.5
574,768 + PGA1_c05600 0.82 -2.0
574,803 + PGA1_c05600 0.87 +0.2
574,852 + -0.5
574,988 + PGA1_c05610 0.26 -1.1
575,012 + PGA1_c05610 0.33 -1.1
575,017 + PGA1_c05610 0.34 +1.3
575,022 + PGA1_c05610 0.36 -3.1
575,030 - PGA1_c05610 0.38 +1.0
575,030 - PGA1_c05610 0.38 -1.0
575,030 - PGA1_c05610 0.38 +0.2
575,030 - PGA1_c05610 0.38 +1.7
575,035 - PGA1_c05610 0.39 +0.6
575,059 + PGA1_c05610 0.46 -0.1
575,106 + PGA1_c05610 0.59 +0.7
575,124 - PGA1_c05610 0.64 +0.9
575,139 + PGA1_c05610 0.69 -0.1
575,139 + PGA1_c05610 0.69 -0.9
575,139 + PGA1_c05610 0.69 +0.0
575,147 - PGA1_c05610 0.71 -2.8
575,147 - PGA1_c05610 0.71 +0.1
575,187 + PGA1_c05610 0.82 +3.5
575,237 + -0.7
575,322 + +1.7
575,377 + PGA1_c05620 0.16 +1.2
575,408 + PGA1_c05620 0.20 -0.5
575,432 + PGA1_c05620 0.23 +1.8
575,433 - PGA1_c05620 0.23 -1.3
575,465 - PGA1_c05620 0.27 +0.2
575,465 - PGA1_c05620 0.27 +2.5
575,520 + PGA1_c05620 0.34 -0.1
575,520 + PGA1_c05620 0.34 -0.3
575,525 + PGA1_c05620 0.35 +1.5
575,617 + PGA1_c05620 0.46 -1.9
575,617 + PGA1_c05620 0.46 +2.2
575,617 + PGA1_c05620 0.46 +2.3
575,651 + PGA1_c05620 0.51 -2.1
575,671 + PGA1_c05620 0.53 +0.0
575,684 - PGA1_c05620 0.55 +1.0
575,702 - PGA1_c05620 0.57 -0.0
575,761 + PGA1_c05620 0.65 -0.5
575,761 + PGA1_c05620 0.65 +2.1
575,779 - PGA1_c05620 0.67 -1.3
575,822 + PGA1_c05620 0.72 +0.5
575,884 + PGA1_c05620 0.80 +1.8
575,890 + PGA1_c05620 0.81 -0.5

Or see this region's nucleotide sequence