Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05320 and PGA1_c05330 overlap by 4 nucleotides PGA1_c05330 and PGA1_c05340 overlap by 4 nucleotides PGA1_c05340 and PGA1_c05350 overlap by 4 nucleotides
PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147
_c05320
PGA1_c05330: PGA1_c05330 - hypothetical protein, at 531,144 to 532,046
_c05330
PGA1_c05340: PGA1_c05340 - 4'-phosphopantetheinyl transferase-like protein, at 532,043 to 532,756
_c05340
PGA1_c05350: PGA1_c05350 - dimodular nonribosomal peptide synthetase, at 532,753 to 537,387
_c05350
Position (kb) 532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.066 kb on + strand at 531.124 kb on + strand at 531.168 kb on - strand at 531.168 kb on - strand at 531.214 kb on - strand at 531.228 kb on + strand at 531.309 kb on + strand, within PGA1_c05330 at 531.420 kb on + strand, within PGA1_c05330 at 531.428 kb on - strand, within PGA1_c05330 at 531.445 kb on + strand, within PGA1_c05330 at 531.571 kb on + strand, within PGA1_c05330 at 531.582 kb on - strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.638 kb on + strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.646 kb on - strand, within PGA1_c05330 at 531.721 kb on + strand, within PGA1_c05330 at 531.736 kb on + strand, within PGA1_c05330 at 531.801 kb on + strand, within PGA1_c05330 at 531.840 kb on - strand, within PGA1_c05330 at 531.902 kb on + strand, within PGA1_c05330 at 531.931 kb on - strand, within PGA1_c05330 at 531.960 kb on + strand at 531.982 kb on - strand at 532.017 kb on - strand at 532.782 kb on + strand at 532.865 kb on + strand at 532.905 kb on + strand at 532.995 kb on - strand at 533.035 kb on - strand at 533.046 kb on - strand at 533.249 kb on + strand, within PGA1_c05350 at 533.249 kb on + strand, within PGA1_c05350 at 533.249 kb on + strand, within PGA1_c05350 at 533.251 kb on + strand, within PGA1_c05350 at 533.257 kb on - strand, within PGA1_c05350 at 533.257 kb on - strand, within PGA1_c05350 at 533.259 kb on - strand, within PGA1_c05350 at 533.259 kb on - strand, within PGA1_c05350 at 533.396 kb on - strand, within PGA1_c05350 at 533.454 kb on + strand, within PGA1_c05350 at 533.454 kb on + strand, within PGA1_c05350 at 533.586 kb on + strand, within PGA1_c05350 at 533.636 kb on + strand, within PGA1_c05350 at 533.654 kb on + strand, within PGA1_c05350 at 533.719 kb on + strand, within PGA1_c05350 at 533.748 kb on + strand, within PGA1_c05350
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 531,066 + -0.0 531,124 + +0.2 531,168 - +0.3 531,168 - +0.9 531,214 - -1.0 531,228 + -1.4 531,309 + PGA1_c05330 0.18 -2.1 531,420 + PGA1_c05330 0.31 -1.2 531,428 - PGA1_c05330 0.31 -2.7 531,445 + PGA1_c05330 0.33 -1.1 531,571 + PGA1_c05330 0.47 +1.2 531,582 - PGA1_c05330 0.49 -2.1 531,633 + PGA1_c05330 0.54 -1.2 531,633 + PGA1_c05330 0.54 -0.6 531,638 + PGA1_c05330 0.55 +1.1 531,641 - PGA1_c05330 0.55 +0.3 531,641 - PGA1_c05330 0.55 +0.0 531,646 - PGA1_c05330 0.56 +1.5 531,721 + PGA1_c05330 0.64 +1.8 531,736 + PGA1_c05330 0.66 +0.4 531,801 + PGA1_c05330 0.73 +2.1 531,840 - PGA1_c05330 0.77 +1.9 531,902 + PGA1_c05330 0.84 -0.1 531,931 - PGA1_c05330 0.87 -0.6 531,960 + +0.6 531,982 - -2.8 532,017 - +1.3 532,782 + -0.5 532,865 + +1.7 532,905 + -0.1 532,995 - +2.3 533,035 - +0.9 533,046 - +1.1 533,249 + PGA1_c05350 0.11 +0.6 533,249 + PGA1_c05350 0.11 +1.2 533,249 + PGA1_c05350 0.11 +1.7 533,251 + PGA1_c05350 0.11 +0.5 533,257 - PGA1_c05350 0.11 -0.4 533,257 - PGA1_c05350 0.11 +0.1 533,259 - PGA1_c05350 0.11 +0.2 533,259 - PGA1_c05350 0.11 +0.0 533,396 - PGA1_c05350 0.14 -0.0 533,454 + PGA1_c05350 0.15 +0.9 533,454 + PGA1_c05350 0.15 -0.6 533,586 + PGA1_c05350 0.18 +0.2 533,636 + PGA1_c05350 0.19 +0.2 533,654 + PGA1_c05350 0.19 -1.0 533,719 + PGA1_c05350 0.21 +0.5 533,748 + PGA1_c05350 0.21 -1.1
Or see this region's nucleotide sequence