Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05290

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05280 and PGA1_c05290 are separated by 33 nucleotidesPGA1_c05290 and PGA1_c05300 are separated by 144 nucleotides PGA1_c05280: PGA1_c05280 - hypothetical protein, at 523,673 to 524,959 _c05280 PGA1_c05290: PGA1_c05290 - polysaccharide biosynthesis protein ExoT-like protein, at 524,993 to 526,357 _c05290 PGA1_c05300: PGA1_c05300 - putative glycosyl transferase, at 526,502 to 527,719 _c05300 Position (kb) 524 525 526 527Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 524.113 kb on + strand, within PGA1_c05280at 524.192 kb on + strand, within PGA1_c05280at 524.192 kb on + strand, within PGA1_c05280at 524.193 kb on + strand, within PGA1_c05280at 524.200 kb on - strand, within PGA1_c05280at 524.220 kb on - strand, within PGA1_c05280at 524.235 kb on + strand, within PGA1_c05280at 524.246 kb on - strand, within PGA1_c05280at 524.288 kb on + strand, within PGA1_c05280at 524.288 kb on + strand, within PGA1_c05280at 524.309 kb on - strand, within PGA1_c05280at 524.347 kb on + strand, within PGA1_c05280at 524.355 kb on - strand, within PGA1_c05280at 524.355 kb on - strand, within PGA1_c05280at 524.400 kb on + strand, within PGA1_c05280at 524.400 kb on + strand, within PGA1_c05280at 524.410 kb on + strand, within PGA1_c05280at 524.436 kb on - strand, within PGA1_c05280at 524.463 kb on + strand, within PGA1_c05280at 524.464 kb on + strand, within PGA1_c05280at 524.571 kb on - strand, within PGA1_c05280at 524.578 kb on + strand, within PGA1_c05280at 524.578 kb on + strand, within PGA1_c05280at 524.730 kb on - strand, within PGA1_c05280at 524.762 kb on + strand, within PGA1_c05280at 524.811 kb on + strand, within PGA1_c05280at 524.819 kb on - strand, within PGA1_c05280at 524.867 kb on + strandat 524.867 kb on + strandat 524.875 kb on - strandat 524.935 kb on + strandat 524.940 kb on + strandat 524.974 kb on + strandat 524.982 kb on - strandat 524.997 kb on - strandat 524.997 kb on - strandat 525.060 kb on - strandat 525.083 kb on - strandat 525.151 kb on - strand, within PGA1_c05290at 525.151 kb on - strand, within PGA1_c05290at 525.190 kb on - strand, within PGA1_c05290at 525.221 kb on + strand, within PGA1_c05290at 525.269 kb on + strand, within PGA1_c05290at 525.269 kb on + strand, within PGA1_c05290at 525.300 kb on - strand, within PGA1_c05290at 525.307 kb on - strand, within PGA1_c05290at 525.343 kb on + strand, within PGA1_c05290at 525.346 kb on + strand, within PGA1_c05290at 525.346 kb on + strand, within PGA1_c05290at 525.356 kb on + strand, within PGA1_c05290at 525.375 kb on + strand, within PGA1_c05290at 525.383 kb on - strand, within PGA1_c05290at 525.394 kb on + strand, within PGA1_c05290at 525.408 kb on - strand, within PGA1_c05290at 525.448 kb on + strand, within PGA1_c05290at 525.471 kb on - strand, within PGA1_c05290at 525.479 kb on + strand, within PGA1_c05290at 525.479 kb on + strand, within PGA1_c05290at 525.481 kb on + strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.496 kb on + strand, within PGA1_c05290at 525.501 kb on + strand, within PGA1_c05290at 525.501 kb on + strand, within PGA1_c05290at 525.501 kb on + strand, within PGA1_c05290at 525.503 kb on - strand, within PGA1_c05290at 525.509 kb on - strand, within PGA1_c05290at 525.541 kb on + strand, within PGA1_c05290at 525.548 kb on + strand, within PGA1_c05290at 525.549 kb on - strand, within PGA1_c05290at 525.556 kb on - strand, within PGA1_c05290at 525.596 kb on + strand, within PGA1_c05290at 525.613 kb on + strand, within PGA1_c05290at 525.626 kb on - strand, within PGA1_c05290at 525.628 kb on + strand, within PGA1_c05290at 525.674 kb on - strand, within PGA1_c05290at 525.712 kb on - strand, within PGA1_c05290at 525.754 kb on + strand, within PGA1_c05290at 525.762 kb on - strand, within PGA1_c05290at 525.796 kb on - strand, within PGA1_c05290at 525.798 kb on - strand, within PGA1_c05290at 525.836 kb on + strand, within PGA1_c05290at 525.844 kb on - strand, within PGA1_c05290at 525.888 kb on - strand, within PGA1_c05290at 525.924 kb on + strand, within PGA1_c05290at 525.940 kb on + strand, within PGA1_c05290at 525.943 kb on - strand, within PGA1_c05290at 525.953 kb on - strand, within PGA1_c05290at 525.984 kb on + strand, within PGA1_c05290at 525.984 kb on + strand, within PGA1_c05290at 525.986 kb on + strand, within PGA1_c05290at 525.992 kb on - strand, within PGA1_c05290at 525.992 kb on - strand, within PGA1_c05290at 526.029 kb on + strand, within PGA1_c05290at 526.029 kb on + strand, within PGA1_c05290at 526.029 kb on + strand, within PGA1_c05290at 526.036 kb on - strand, within PGA1_c05290at 526.037 kb on - strand, within PGA1_c05290at 526.037 kb on - strand, within PGA1_c05290at 526.037 kb on - strand, within PGA1_c05290at 526.062 kb on - strand, within PGA1_c05290at 526.080 kb on - strand, within PGA1_c05290at 526.116 kb on + strand, within PGA1_c05290at 526.116 kb on + strand, within PGA1_c05290at 526.182 kb on + strand, within PGA1_c05290at 526.185 kb on - strand, within PGA1_c05290at 526.187 kb on + strand, within PGA1_c05290at 526.190 kb on - strand, within PGA1_c05290at 526.285 kb on - strandat 526.304 kb on - strandat 526.330 kb on - strandat 526.346 kb on + strandat 526.390 kb on + strandat 526.437 kb on - strandat 526.532 kb on - strandat 526.535 kb on - strandat 526.573 kb on - strandat 526.579 kb on - strandat 526.593 kb on - strandat 526.660 kb on + strand, within PGA1_c05300at 526.660 kb on + strand, within PGA1_c05300at 526.663 kb on - strand, within PGA1_c05300at 526.663 kb on - strand, within PGA1_c05300at 526.668 kb on + strand, within PGA1_c05300at 526.671 kb on + strand, within PGA1_c05300at 526.752 kb on - strand, within PGA1_c05300at 526.759 kb on + strand, within PGA1_c05300at 526.925 kb on + strand, within PGA1_c05300at 526.932 kb on - strand, within PGA1_c05300at 526.939 kb on + strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 527.083 kb on - strand, within PGA1_c05300at 527.085 kb on + strand, within PGA1_c05300at 527.093 kb on + strand, within PGA1_c05300at 527.115 kb on + strand, within PGA1_c05300at 527.124 kb on - strand, within PGA1_c05300at 527.154 kb on - strand, within PGA1_c05300at 527.226 kb on - strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.258 kb on - strand, within PGA1_c05300at 527.277 kb on + strand, within PGA1_c05300at 527.320 kb on + strand, within PGA1_c05300

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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524,113 + PGA1_c05280 0.34 -0.4
524,192 + PGA1_c05280 0.40 -1.4
524,192 + PGA1_c05280 0.40 +1.8
524,193 + PGA1_c05280 0.40 +0.8
524,200 - PGA1_c05280 0.41 -3.0
524,220 - PGA1_c05280 0.43 +0.2
524,235 + PGA1_c05280 0.44 +1.2
524,246 - PGA1_c05280 0.45 -0.3
524,288 + PGA1_c05280 0.48 -0.0
524,288 + PGA1_c05280 0.48 -0.2
524,309 - PGA1_c05280 0.49 +1.1
524,347 + PGA1_c05280 0.52 -2.9
524,355 - PGA1_c05280 0.53 -2.1
524,355 - PGA1_c05280 0.53 +1.5
524,400 + PGA1_c05280 0.56 -3.4
524,400 + PGA1_c05280 0.56 -0.7
524,410 + PGA1_c05280 0.57 -2.0
524,436 - PGA1_c05280 0.59 -0.2
524,463 + PGA1_c05280 0.61 +0.4
524,464 + PGA1_c05280 0.61 +1.2
524,571 - PGA1_c05280 0.70 +1.8
524,578 + PGA1_c05280 0.70 +0.6
524,578 + PGA1_c05280 0.70 +0.3
524,730 - PGA1_c05280 0.82 +0.4
524,762 + PGA1_c05280 0.85 -0.1
524,811 + PGA1_c05280 0.88 +1.2
524,819 - PGA1_c05280 0.89 +1.5
524,867 + +1.2
524,867 + +1.5
524,875 - -1.1
524,935 + -1.5
524,940 + -0.7
524,974 + -3.4
524,982 - +0.5
524,997 - +0.1
524,997 - +0.9
525,060 - -0.5
525,083 - +0.2
525,151 - PGA1_c05290 0.12 -1.9
525,151 - PGA1_c05290 0.12 +1.1
525,190 - PGA1_c05290 0.14 +0.3
525,221 + PGA1_c05290 0.17 -0.1
525,269 + PGA1_c05290 0.20 +0.1
525,269 + PGA1_c05290 0.20 +0.4
525,300 - PGA1_c05290 0.22 -0.4
525,307 - PGA1_c05290 0.23 +0.4
525,343 + PGA1_c05290 0.26 -0.8
525,346 + PGA1_c05290 0.26 +2.6
525,346 + PGA1_c05290 0.26 -0.2
525,356 + PGA1_c05290 0.27 -1.3
525,375 + PGA1_c05290 0.28 +0.0
525,383 - PGA1_c05290 0.29 +1.8
525,394 + PGA1_c05290 0.29 +0.9
525,408 - PGA1_c05290 0.30 +0.7
525,448 + PGA1_c05290 0.33 +2.5
525,471 - PGA1_c05290 0.35 -0.2
525,479 + PGA1_c05290 0.36 +0.9
525,479 + PGA1_c05290 0.36 -0.5
525,481 + PGA1_c05290 0.36 +0.9
525,487 - PGA1_c05290 0.36 +1.3
525,487 - PGA1_c05290 0.36 +2.1
525,487 - PGA1_c05290 0.36 +0.3
525,487 - PGA1_c05290 0.36 +1.1
525,487 - PGA1_c05290 0.36 +0.2
525,496 + PGA1_c05290 0.37 +1.3
525,501 + PGA1_c05290 0.37 +0.3
525,501 + PGA1_c05290 0.37 +0.5
525,501 + PGA1_c05290 0.37 +1.5
525,503 - PGA1_c05290 0.37 +1.9
525,509 - PGA1_c05290 0.38 +0.3
525,541 + PGA1_c05290 0.40 +0.2
525,548 + PGA1_c05290 0.41 -3.6
525,549 - PGA1_c05290 0.41 +0.3
525,556 - PGA1_c05290 0.41 -0.5
525,596 + PGA1_c05290 0.44 +0.2
525,613 + PGA1_c05290 0.45 -0.2
525,626 - PGA1_c05290 0.46 +2.2
525,628 + PGA1_c05290 0.47 +1.8
525,674 - PGA1_c05290 0.50 -1.5
525,712 - PGA1_c05290 0.53 +1.1
525,754 + PGA1_c05290 0.56 -1.2
525,762 - PGA1_c05290 0.56 +0.5
525,796 - PGA1_c05290 0.59 -0.1
525,798 - PGA1_c05290 0.59 +1.5
525,836 + PGA1_c05290 0.62 -2.3
525,844 - PGA1_c05290 0.62 +0.6
525,888 - PGA1_c05290 0.66 +1.6
525,924 + PGA1_c05290 0.68 +1.0
525,940 + PGA1_c05290 0.69 +1.7
525,943 - PGA1_c05290 0.70 -2.0
525,953 - PGA1_c05290 0.70 -0.6
525,984 + PGA1_c05290 0.73 +0.3
525,984 + PGA1_c05290 0.73 +1.7
525,986 + PGA1_c05290 0.73 +0.3
525,992 - PGA1_c05290 0.73 +0.6
525,992 - PGA1_c05290 0.73 -0.1
526,029 + PGA1_c05290 0.76 -1.3
526,029 + PGA1_c05290 0.76 +1.2
526,029 + PGA1_c05290 0.76 +0.9
526,036 - PGA1_c05290 0.76 +0.3
526,037 - PGA1_c05290 0.76 -1.1
526,037 - PGA1_c05290 0.76 +0.4
526,037 - PGA1_c05290 0.76 +0.3
526,062 - PGA1_c05290 0.78 +1.3
526,080 - PGA1_c05290 0.80 +1.9
526,116 + PGA1_c05290 0.82 +0.7
526,116 + PGA1_c05290 0.82 +0.9
526,182 + PGA1_c05290 0.87 +0.2
526,185 - PGA1_c05290 0.87 +0.7
526,187 + PGA1_c05290 0.87 +1.3
526,190 - PGA1_c05290 0.88 +0.5
526,285 - -1.6
526,304 - +0.6
526,330 - +0.5
526,346 + +0.2
526,390 + +0.0
526,437 - -2.3
526,532 - +0.1
526,535 - +0.2
526,573 - +0.7
526,579 - +0.9
526,593 - +1.1
526,660 + PGA1_c05300 0.13 +0.2
526,660 + PGA1_c05300 0.13 -1.2
526,663 - PGA1_c05300 0.13 +2.1
526,663 - PGA1_c05300 0.13 +0.3
526,668 + PGA1_c05300 0.14 -0.2
526,671 + PGA1_c05300 0.14 -0.0
526,752 - PGA1_c05300 0.21 +0.5
526,759 + PGA1_c05300 0.21 +0.3
526,925 + PGA1_c05300 0.35 +2.5
526,932 - PGA1_c05300 0.35 +1.4
526,939 + PGA1_c05300 0.36 +1.7
526,988 - PGA1_c05300 0.40 -1.2
526,988 - PGA1_c05300 0.40 -2.6
527,083 - PGA1_c05300 0.48 +0.1
527,085 + PGA1_c05300 0.48 +1.1
527,093 + PGA1_c05300 0.49 +0.1
527,115 + PGA1_c05300 0.50 +1.5
527,124 - PGA1_c05300 0.51 +1.8
527,154 - PGA1_c05300 0.54 +0.8
527,226 - PGA1_c05300 0.59 +1.1
527,250 + PGA1_c05300 0.61 +1.1
527,250 + PGA1_c05300 0.61 +1.4
527,258 - PGA1_c05300 0.62 +1.1
527,277 + PGA1_c05300 0.64 -0.6
527,320 + PGA1_c05300 0.67 +2.2

Or see this region's nucleotide sequence