Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04920 and PGA1_c04930 are separated by 135 nucleotides PGA1_c04930 and PGA1_c04940 are separated by 112 nucleotides PGA1_c04940 and PGA1_c04950 are separated by 296 nucleotides
PGA1_c04920: PGA1_c04920 - l-lactate dehydrogenase IldD, at 483,267 to 484,433
_c04920
PGA1_c04930: PGA1_c04930 - tryptophan synthase alpha chain, at 484,569 to 485,360
_c04930
PGA1_c04940: PGA1_c04940 - Lipid A 3-O-deacylase (PagL)., at 485,473 to 485,985
_c04940
PGA1_c04950: PGA1_c04950 - GTP-dependent nucleic acid-binding protein EngD, at 486,282 to 487,379
_c04950
Position (kb) 484
485
486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 483.577 kb on - strand, within PGA1_c04920 at 483.584 kb on - strand, within PGA1_c04920 at 483.617 kb on + strand, within PGA1_c04920 at 483.631 kb on + strand, within PGA1_c04920 at 483.682 kb on + strand, within PGA1_c04920 at 483.742 kb on + strand, within PGA1_c04920 at 483.743 kb on + strand, within PGA1_c04920 at 483.751 kb on - strand, within PGA1_c04920 at 483.784 kb on + strand, within PGA1_c04920 at 483.851 kb on + strand, within PGA1_c04920 at 483.885 kb on + strand, within PGA1_c04920 at 483.893 kb on - strand, within PGA1_c04920 at 483.924 kb on + strand, within PGA1_c04920 at 483.924 kb on + strand, within PGA1_c04920 at 483.952 kb on - strand, within PGA1_c04920 at 484.003 kb on + strand, within PGA1_c04920 at 484.007 kb on + strand, within PGA1_c04920 at 484.050 kb on - strand, within PGA1_c04920 at 484.128 kb on - strand, within PGA1_c04920 at 484.138 kb on - strand, within PGA1_c04920 at 484.156 kb on + strand, within PGA1_c04920 at 484.202 kb on + strand, within PGA1_c04920 at 484.235 kb on - strand, within PGA1_c04920 at 484.249 kb on + strand, within PGA1_c04920 at 484.257 kb on + strand, within PGA1_c04920 at 484.257 kb on - strand, within PGA1_c04920 at 484.300 kb on - strand, within PGA1_c04920 at 484.329 kb on + strand at 484.435 kb on + strand at 484.443 kb on - strand at 484.443 kb on - strand at 484.443 kb on - strand at 484.453 kb on - strand at 484.499 kb on + strand at 484.507 kb on - strand at 484.526 kb on - strand at 485.363 kb on - strand at 485.392 kb on - strand at 485.412 kb on + strand at 485.420 kb on - strand at 485.420 kb on - strand at 485.426 kb on + strand at 485.453 kb on + strand at 485.517 kb on + strand at 485.522 kb on + strand at 485.530 kb on - strand, within PGA1_c04940 at 485.548 kb on + strand, within PGA1_c04940 at 485.557 kb on + strand, within PGA1_c04940 at 485.557 kb on + strand, within PGA1_c04940 at 485.557 kb on + strand, within PGA1_c04940 at 485.557 kb on + strand, within PGA1_c04940 at 485.557 kb on + strand, within PGA1_c04940 at 485.562 kb on + strand, within PGA1_c04940 at 485.562 kb on + strand, within PGA1_c04940 at 485.565 kb on - strand, within PGA1_c04940 at 485.565 kb on - strand, within PGA1_c04940 at 485.593 kb on + strand, within PGA1_c04940 at 485.604 kb on + strand, within PGA1_c04940 at 485.649 kb on + strand, within PGA1_c04940 at 485.676 kb on + strand, within PGA1_c04940 at 485.684 kb on - strand, within PGA1_c04940 at 485.740 kb on + strand, within PGA1_c04940 at 485.746 kb on - strand, within PGA1_c04940 at 485.766 kb on - strand, within PGA1_c04940 at 485.766 kb on - strand, within PGA1_c04940 at 485.853 kb on + strand, within PGA1_c04940 at 485.853 kb on + strand, within PGA1_c04940 at 485.904 kb on - strand, within PGA1_c04940 at 485.943 kb on - strand at 485.947 kb on + strand at 485.947 kb on + strand at 485.947 kb on + strand at 485.947 kb on + strand at 485.947 kb on + strand at 485.955 kb on - strand at 485.955 kb on - strand at 485.955 kb on - strand at 485.964 kb on + strand at 485.992 kb on + strand at 485.992 kb on + strand at 485.999 kb on - strand at 486.000 kb on - strand at 486.073 kb on - strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.084 kb on - strand at 486.140 kb on - strand at 486.173 kb on + strand at 486.190 kb on + strand at 486.202 kb on + strand at 486.212 kb on - strand at 486.216 kb on - strand at 486.234 kb on + strand at 486.244 kb on + strand at 486.255 kb on + strand at 486.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 483,577 - PGA1_c04920 0.27 +2.4 483,584 - PGA1_c04920 0.27 +1.4 483,617 + PGA1_c04920 0.30 -1.6 483,631 + PGA1_c04920 0.31 +1.0 483,682 + PGA1_c04920 0.36 +0.5 483,742 + PGA1_c04920 0.41 -1.8 483,743 + PGA1_c04920 0.41 +0.6 483,751 - PGA1_c04920 0.41 -2.9 483,784 + PGA1_c04920 0.44 -0.8 483,851 + PGA1_c04920 0.50 +0.5 483,885 + PGA1_c04920 0.53 -1.1 483,893 - PGA1_c04920 0.54 +0.1 483,924 + PGA1_c04920 0.56 -0.6 483,924 + PGA1_c04920 0.56 +0.8 483,952 - PGA1_c04920 0.59 +2.2 484,003 + PGA1_c04920 0.63 -2.5 484,007 + PGA1_c04920 0.63 +2.7 484,050 - PGA1_c04920 0.67 -0.4 484,128 - PGA1_c04920 0.74 +1.9 484,138 - PGA1_c04920 0.75 +0.1 484,156 + PGA1_c04920 0.76 -0.7 484,202 + PGA1_c04920 0.80 +0.6 484,235 - PGA1_c04920 0.83 +1.0 484,249 + PGA1_c04920 0.84 +1.6 484,257 + PGA1_c04920 0.85 +0.6 484,257 - PGA1_c04920 0.85 +1.5 484,300 - PGA1_c04920 0.89 -1.5 484,329 + -0.9 484,435 + -0.4 484,443 - +1.8 484,443 - +1.7 484,443 - -0.1 484,453 - +2.1 484,499 + -0.1 484,507 - -0.7 484,526 - -1.6 485,363 - +2.0 485,392 - +1.2 485,412 + -0.9 485,420 - -2.3 485,420 - +0.5 485,426 + -2.7 485,453 + +1.9 485,517 + +1.1 485,522 + -0.5 485,530 - PGA1_c04940 0.11 -1.9 485,548 + PGA1_c04940 0.15 +0.2 485,557 + PGA1_c04940 0.16 -2.8 485,557 + PGA1_c04940 0.16 -0.2 485,557 + PGA1_c04940 0.16 +0.7 485,557 + PGA1_c04940 0.16 -0.9 485,557 + PGA1_c04940 0.16 -1.9 485,562 + PGA1_c04940 0.17 +1.3 485,562 + PGA1_c04940 0.17 +2.3 485,565 - PGA1_c04940 0.18 -2.2 485,565 - PGA1_c04940 0.18 -2.6 485,593 + PGA1_c04940 0.23 +0.4 485,604 + PGA1_c04940 0.26 -2.3 485,649 + PGA1_c04940 0.34 +0.2 485,676 + PGA1_c04940 0.40 -0.1 485,684 - PGA1_c04940 0.41 -0.1 485,740 + PGA1_c04940 0.52 -0.8 485,746 - PGA1_c04940 0.53 +2.3 485,766 - PGA1_c04940 0.57 -0.9 485,766 - PGA1_c04940 0.57 -0.5 485,853 + PGA1_c04940 0.74 +0.2 485,853 + PGA1_c04940 0.74 -0.4 485,904 - PGA1_c04940 0.84 +1.8 485,943 - +0.7 485,947 + -0.1 485,947 + -0.7 485,947 + +1.2 485,947 + +0.5 485,947 + +0.2 485,955 - +1.3 485,955 - -1.3 485,955 - -1.7 485,964 + +0.0 485,992 + -3.5 485,992 + -1.3 485,999 - +0.3 486,000 - -1.3 486,073 - -1.8 486,076 + -0.5 486,076 + -1.0 486,076 + -0.5 486,076 + +0.6 486,076 + -1.5 486,076 + -0.1 486,076 + -0.5 486,076 + +1.1 486,076 + +0.9 486,076 + +0.4 486,076 + +0.6 486,076 + -4.1 486,076 + -4.0 486,076 + -3.8 486,076 + -1.0 486,076 + -1.5 486,076 + -0.4 486,076 + -1.1 486,076 + -2.2 486,076 + -1.6 486,076 + +0.4 486,076 + +0.1 486,076 + +0.8 486,076 + +2.3 486,076 + +0.6 486,076 + +1.1 486,076 + +1.0 486,076 + +3.0 486,076 + -2.9 486,084 - -0.4 486,084 - +0.3 486,084 - -0.7 486,084 - +2.5 486,084 - -1.6 486,084 - +1.7 486,084 - +1.2 486,084 - -0.3 486,084 - -0.5 486,084 - -1.6 486,084 - +0.6 486,084 - +0.9 486,084 - +0.1 486,084 - +0.5 486,084 - -0.4 486,084 - -1.3 486,084 - +0.3 486,084 - -1.6 486,084 - +0.3 486,084 - +0.1 486,084 - -1.7 486,084 - -2.8 486,084 - +1.1 486,084 - -0.6 486,084 - -0.2 486,084 - +1.2 486,084 - +1.3 486,084 - +0.3 486,084 - +1.7 486,084 - +0.9 486,084 - +0.6 486,084 - -0.8 486,084 - -1.1 486,084 - -2.9 486,084 - -2.2 486,084 - +0.7 486,084 - +1.5 486,140 - +1.4 486,173 + +1.2 486,190 + -2.9 486,202 + +1.2 486,212 - +0.9 486,216 - -1.0 486,234 + +0.4 486,244 + +2.1 486,255 + +1.4 486,273 - -2.7
Or see this region's nucleotide sequence