Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04160 and PGA1_c04170 are separated by 65 nucleotides PGA1_c04170 and PGA1_c04180 are separated by 176 nucleotides PGA1_c04180 and PGA1_c04190 are separated by 57 nucleotides
PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774
_c04160
PGA1_c04170: PGA1_c04170 - ribulose-phosphate 3-epimerase Rpe, at 404,840 to 405,529
_c04170
PGA1_c04180: PGA1_c04180 - phosphonates import ATP-binding protein PhnC, at 405,706 to 406,524
_c04180
PGA1_c04190: PGA1_c04190 - phosphate uptake ABC transporter periplasmic solute-binding protein PhoD, at 406,582 to 407,490
_c04190
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 404.754 kb on + strand at 404.822 kb on - strand at 405.587 kb on - strand at 405.619 kb on + strand at 405.670 kb on + strand at 405.670 kb on + strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.680 kb on + strand at 405.680 kb on + strand at 405.688 kb on - strand at 405.688 kb on - strand at 405.701 kb on + strand at 405.701 kb on + strand at 405.708 kb on - strand at 405.756 kb on + strand at 405.756 kb on + strand at 405.799 kb on + strand, within PGA1_c04180 at 405.861 kb on + strand, within PGA1_c04180 at 405.890 kb on + strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.963 kb on + strand, within PGA1_c04180 at 405.971 kb on - strand, within PGA1_c04180 at 406.003 kb on - strand, within PGA1_c04180 at 406.012 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.106 kb on - strand, within PGA1_c04180 at 406.140 kb on + strand, within PGA1_c04180 at 406.148 kb on - strand, within PGA1_c04180 at 406.150 kb on - strand, within PGA1_c04180 at 406.155 kb on - strand, within PGA1_c04180 at 406.340 kb on - strand, within PGA1_c04180 at 406.398 kb on + strand, within PGA1_c04180 at 406.453 kb on + strand at 406.468 kb on - strand at 406.485 kb on - strand at 406.485 kb on - strand at 406.551 kb on + strand at 406.561 kb on + strand at 406.613 kb on + strand at 406.613 kb on + strand at 406.618 kb on + strand at 406.618 kb on + strand at 406.618 kb on + strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.628 kb on + strand at 406.638 kb on + strand at 406.638 kb on + strand at 406.646 kb on - strand at 406.646 kb on - strand at 406.646 kb on - strand at 406.701 kb on - strand, within PGA1_c04190 at 406.721 kb on - strand, within PGA1_c04190 at 406.761 kb on - strand, within PGA1_c04190 at 406.788 kb on - strand, within PGA1_c04190 at 406.788 kb on - strand, within PGA1_c04190 at 406.796 kb on + strand, within PGA1_c04190 at 406.833 kb on + strand, within PGA1_c04190 at 406.882 kb on + strand, within PGA1_c04190 at 406.895 kb on - strand, within PGA1_c04190 at 406.924 kb on + strand, within PGA1_c04190 at 406.924 kb on + strand, within PGA1_c04190 at 406.926 kb on - strand, within PGA1_c04190 at 406.953 kb on - strand, within PGA1_c04190 at 406.986 kb on + strand, within PGA1_c04190 at 406.986 kb on + strand, within PGA1_c04190 at 406.989 kb on - strand, within PGA1_c04190 at 407.071 kb on + strand, within PGA1_c04190 at 407.122 kb on + strand, within PGA1_c04190 at 407.125 kb on - strand, within PGA1_c04190 at 407.132 kb on + strand, within PGA1_c04190 at 407.242 kb on + strand, within PGA1_c04190 at 407.245 kb on - strand, within PGA1_c04190 at 407.263 kb on - strand, within PGA1_c04190 at 407.280 kb on + strand, within PGA1_c04190 at 407.280 kb on + strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.300 kb on + strand, within PGA1_c04190 at 407.300 kb on + strand, within PGA1_c04190 at 407.308 kb on - strand, within PGA1_c04190 at 407.311 kb on - strand, within PGA1_c04190 at 407.315 kb on + strand, within PGA1_c04190 at 407.318 kb on - strand, within PGA1_c04190 at 407.401 kb on - strand at 407.415 kb on + strand at 407.415 kb on + strand at 407.415 kb on + strand at 407.422 kb on - strand at 407.423 kb on - strand at 407.423 kb on - strand at 407.447 kb on + strand at 407.447 kb on + strand at 407.447 kb on + strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.499 kb on - strand at 407.512 kb on - strand at 407.517 kb on + strand at 407.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 404,754 + -0.0 404,822 - -3.4 405,587 - +1.1 405,619 + +1.2 405,670 + -3.5 405,670 + -0.3 405,678 - +0.2 405,678 - -0.3 405,678 - -0.2 405,680 + -2.0 405,680 + +1.4 405,688 - -0.5 405,688 - -2.3 405,701 + +0.5 405,701 + +0.0 405,708 - +2.2 405,756 + -2.5 405,756 + +0.1 405,799 + PGA1_c04180 0.11 +0.3 405,861 + PGA1_c04180 0.19 +1.0 405,890 + PGA1_c04180 0.22 +0.7 405,898 - PGA1_c04180 0.23 -0.5 405,898 - PGA1_c04180 0.23 +1.2 405,899 + PGA1_c04180 0.24 -0.7 405,899 + PGA1_c04180 0.24 +0.2 405,914 + PGA1_c04180 0.25 +1.0 405,914 + PGA1_c04180 0.25 -1.1 405,961 - PGA1_c04180 0.31 +0.7 405,961 - PGA1_c04180 0.31 -0.0 405,963 + PGA1_c04180 0.31 +2.3 405,971 - PGA1_c04180 0.32 -0.7 406,003 - PGA1_c04180 0.36 +0.0 406,012 + PGA1_c04180 0.37 -0.8 406,044 + PGA1_c04180 0.41 -2.6 406,044 + PGA1_c04180 0.41 +1.4 406,044 + PGA1_c04180 0.41 +0.1 406,106 - PGA1_c04180 0.49 +0.8 406,140 + PGA1_c04180 0.53 -2.0 406,148 - PGA1_c04180 0.54 +1.1 406,150 - PGA1_c04180 0.54 +0.4 406,155 - PGA1_c04180 0.55 +0.2 406,340 - PGA1_c04180 0.77 -1.0 406,398 + PGA1_c04180 0.84 -0.7 406,453 + +1.2 406,468 - +1.0 406,485 - +0.1 406,485 - -3.4 406,551 + +0.5 406,561 + -0.7 406,613 + -1.2 406,613 + +1.6 406,618 + -1.9 406,618 + -1.9 406,618 + +1.2 406,621 - -2.5 406,621 - -0.6 406,621 - -1.6 406,621 - +0.9 406,621 - +1.2 406,626 - +0.9 406,626 - +1.2 406,626 - -0.2 406,626 - +1.7 406,626 - -0.3 406,626 - +0.5 406,626 - +0.3 406,626 - +2.0 406,628 + -0.2 406,638 + -2.5 406,638 + +0.7 406,646 - +0.5 406,646 - -2.8 406,646 - -1.5 406,701 - PGA1_c04190 0.13 -0.2 406,721 - PGA1_c04190 0.15 +5.4 406,761 - PGA1_c04190 0.20 +0.5 406,788 - PGA1_c04190 0.23 +0.1 406,788 - PGA1_c04190 0.23 +1.3 406,796 + PGA1_c04190 0.24 -0.3 406,833 + PGA1_c04190 0.28 +0.4 406,882 + PGA1_c04190 0.33 +1.9 406,895 - PGA1_c04190 0.34 +1.2 406,924 + PGA1_c04190 0.38 -0.9 406,924 + PGA1_c04190 0.38 +1.7 406,926 - PGA1_c04190 0.38 +0.4 406,953 - PGA1_c04190 0.41 -1.5 406,986 + PGA1_c04190 0.44 -0.0 406,986 + PGA1_c04190 0.44 +0.7 406,989 - PGA1_c04190 0.45 -2.0 407,071 + PGA1_c04190 0.54 +3.9 407,122 + PGA1_c04190 0.59 -0.6 407,125 - PGA1_c04190 0.60 +0.8 407,132 + PGA1_c04190 0.61 -1.2 407,242 + PGA1_c04190 0.73 +0.4 407,245 - PGA1_c04190 0.73 +1.1 407,263 - PGA1_c04190 0.75 -0.8 407,280 + PGA1_c04190 0.77 -2.5 407,280 + PGA1_c04190 0.77 -1.1 407,288 - PGA1_c04190 0.78 -0.3 407,288 - PGA1_c04190 0.78 -0.8 407,288 - PGA1_c04190 0.78 +0.2 407,300 + PGA1_c04190 0.79 -0.9 407,300 + PGA1_c04190 0.79 +0.5 407,308 - PGA1_c04190 0.80 +3.1 407,311 - PGA1_c04190 0.80 +1.3 407,315 + PGA1_c04190 0.81 -2.0 407,318 - PGA1_c04190 0.81 +1.7 407,401 - +0.4 407,415 + +0.3 407,415 + -0.3 407,415 + +1.0 407,422 - -1.1 407,423 - -0.6 407,423 - +1.1 407,447 + -0.5 407,447 + -1.2 407,447 + -3.2 407,455 - -1.5 407,455 - +1.2 407,455 - -0.1 407,455 - +1.1 407,455 - -2.6 407,455 - -0.4 407,499 - +2.2 407,512 - +1.0 407,517 + +2.4 407,520 + +0.5
Or see this region's nucleotide sequence