Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00610 and PGA1_262p00620 are separated by 132 nucleotides PGA1_262p00620 and PGA1_262p00630 are separated by 81 nucleotides PGA1_262p00630 and PGA1_262p00640 are separated by 324 nucleotides
PGA1_262p00610: PGA1_262p00610 - metallophosphoesterase, at 71,111 to 71,839
_262p00610
PGA1_262p00620: PGA1_262p00620 - hypothetical protein, at 71,972 to 72,625
_262p00620
PGA1_262p00630: PGA1_262p00630 - Predicted membrane protein, at 72,707 to 73,756
_262p00630
PGA1_262p00640: PGA1_262p00640 - Hemolysin-type calcium-binding repeat (2 copies)., at 74,081 to 75,160
_262p00640
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 72.183 kb on - strand, within PGA1_262p00620 at 72.218 kb on - strand, within PGA1_262p00620 at 72.237 kb on - strand, within PGA1_262p00620 at 72.271 kb on + strand, within PGA1_262p00620 at 72.361 kb on + strand, within PGA1_262p00620 at 72.369 kb on - strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.510 kb on - strand, within PGA1_262p00620 at 72.531 kb on + strand, within PGA1_262p00620 at 72.536 kb on + strand, within PGA1_262p00620 at 72.549 kb on + strand, within PGA1_262p00620 at 72.556 kb on + strand, within PGA1_262p00620 at 72.591 kb on + strand at 72.792 kb on + strand at 72.794 kb on - strand at 72.805 kb on - strand at 72.906 kb on + strand, within PGA1_262p00630 at 72.996 kb on + strand, within PGA1_262p00630 at 73.148 kb on + strand, within PGA1_262p00630 at 73.150 kb on - strand, within PGA1_262p00630 at 73.203 kb on - strand, within PGA1_262p00630 at 73.227 kb on + strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.252 kb on + strand, within PGA1_262p00630 at 73.253 kb on - strand, within PGA1_262p00630 at 73.288 kb on + strand, within PGA1_262p00630 at 73.289 kb on - strand, within PGA1_262p00630 at 73.296 kb on - strand, within PGA1_262p00630 at 73.298 kb on + strand, within PGA1_262p00630 at 73.298 kb on + strand, within PGA1_262p00630 at 73.299 kb on + strand, within PGA1_262p00630 at 73.299 kb on + strand, within PGA1_262p00630 at 73.306 kb on - strand, within PGA1_262p00630 at 73.409 kb on + strand, within PGA1_262p00630 at 73.409 kb on + strand, within PGA1_262p00630 at 73.540 kb on + strand, within PGA1_262p00630 at 73.548 kb on - strand, within PGA1_262p00630 at 73.617 kb on - strand, within PGA1_262p00630 at 73.617 kb on - strand, within PGA1_262p00630 at 73.644 kb on + strand, within PGA1_262p00630 at 73.647 kb on - strand, within PGA1_262p00630 at 73.717 kb on + strand at 73.717 kb on + strand at 73.717 kb on + strand at 73.717 kb on + strand at 73.718 kb on + strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.736 kb on + strand at 73.744 kb on - strand at 73.744 kb on - strand at 73.751 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.808 kb on + strand at 73.808 kb on + strand at 73.854 kb on + strand at 73.858 kb on - strand at 73.862 kb on - strand at 73.862 kb on - strand at 73.869 kb on + strand at 73.879 kb on - strand at 73.891 kb on - strand at 73.923 kb on + strand at 73.924 kb on + strand at 73.926 kb on + strand at 73.932 kb on - strand at 73.942 kb on - strand at 74.002 kb on + strand at 74.010 kb on - strand at 74.025 kb on - strand at 74.025 kb on - strand at 74.053 kb on + strand at 74.093 kb on + strand at 74.147 kb on + strand at 74.166 kb on - strand at 74.196 kb on + strand, within PGA1_262p00640 at 74.196 kb on + strand, within PGA1_262p00640 at 74.196 kb on + strand, within PGA1_262p00640 at 74.204 kb on - strand, within PGA1_262p00640 at 74.204 kb on - strand, within PGA1_262p00640 at 74.204 kb on - strand, within PGA1_262p00640 at 74.271 kb on + strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.324 kb on + strand, within PGA1_262p00640 at 74.327 kb on - strand, within PGA1_262p00640 at 74.329 kb on + strand, within PGA1_262p00640 at 74.336 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.393 kb on + strand, within PGA1_262p00640 at 74.401 kb on - strand, within PGA1_262p00640 at 74.515 kb on + strand, within PGA1_262p00640 at 74.543 kb on + strand, within PGA1_262p00640 at 74.587 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.662 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.698 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.718 kb on - strand, within PGA1_262p00640 at 74.754 kb on + strand, within PGA1_262p00640
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 72,183 - PGA1_262p00620 0.32 -1.3 72,218 - PGA1_262p00620 0.38 -1.9 72,237 - PGA1_262p00620 0.41 +0.3 72,271 + PGA1_262p00620 0.46 +0.1 72,361 + PGA1_262p00620 0.59 -1.6 72,369 - PGA1_262p00620 0.61 -0.5 72,502 + PGA1_262p00620 0.81 -1.5 72,502 + PGA1_262p00620 0.81 -2.7 72,510 - PGA1_262p00620 0.82 -2.6 72,531 + PGA1_262p00620 0.85 -0.2 72,536 + PGA1_262p00620 0.86 -3.1 72,549 + PGA1_262p00620 0.88 -0.7 72,556 + PGA1_262p00620 0.89 -1.4 72,591 + +0.1 72,792 + +0.1 72,794 - +0.3 72,805 - -0.9 72,906 + PGA1_262p00630 0.19 +0.1 72,996 + PGA1_262p00630 0.28 +0.9 73,148 + PGA1_262p00630 0.42 -0.5 73,150 - PGA1_262p00630 0.42 -0.9 73,203 - PGA1_262p00630 0.47 +1.1 73,227 + PGA1_262p00630 0.50 -0.9 73,236 - PGA1_262p00630 0.50 -0.6 73,236 - PGA1_262p00630 0.50 +0.6 73,236 - PGA1_262p00630 0.50 +0.1 73,252 + PGA1_262p00630 0.52 -1.1 73,253 - PGA1_262p00630 0.52 +0.2 73,288 + PGA1_262p00630 0.55 +0.8 73,289 - PGA1_262p00630 0.55 +0.8 73,296 - PGA1_262p00630 0.56 +0.1 73,298 + PGA1_262p00630 0.56 -0.0 73,298 + PGA1_262p00630 0.56 -1.3 73,299 + PGA1_262p00630 0.56 +0.8 73,299 + PGA1_262p00630 0.56 +0.2 73,306 - PGA1_262p00630 0.57 -0.5 73,409 + PGA1_262p00630 0.67 +0.9 73,409 + PGA1_262p00630 0.67 -3.7 73,540 + PGA1_262p00630 0.79 -0.7 73,548 - PGA1_262p00630 0.80 +0.5 73,617 - PGA1_262p00630 0.87 -1.3 73,617 - PGA1_262p00630 0.87 +0.1 73,644 + PGA1_262p00630 0.89 -2.9 73,647 - PGA1_262p00630 0.90 -1.7 73,717 + -3.7 73,717 + +0.5 73,717 + +1.4 73,717 + +0.1 73,718 + -0.1 73,725 - +3.0 73,725 - +0.7 73,725 - -2.4 73,725 - +1.4 73,725 - +0.2 73,725 - +0.5 73,725 - +0.7 73,725 - -2.1 73,725 - +0.3 73,725 - +2.2 73,725 - -0.3 73,725 - +1.1 73,725 - +0.1 73,725 - -1.3 73,725 - -0.1 73,726 - -1.1 73,726 - +1.5 73,726 - +0.7 73,726 - -1.6 73,726 - -1.1 73,726 - -2.1 73,736 + -1.3 73,744 - +0.6 73,744 - +1.2 73,751 + -2.1 73,798 + +1.9 73,798 + +0.3 73,798 + +0.7 73,798 + -1.9 73,798 + +2.5 73,808 + -1.7 73,808 + +0.5 73,854 + +1.0 73,858 - -0.7 73,862 - -0.9 73,862 - -0.3 73,869 + +1.1 73,879 - +0.7 73,891 - -1.3 73,923 + -2.3 73,924 + +0.4 73,926 + -1.6 73,932 - +1.5 73,942 - +1.1 74,002 + -1.9 74,010 - -0.9 74,025 - -1.8 74,025 - +0.7 74,053 + -0.5 74,093 + +1.1 74,147 + +2.3 74,166 - -2.7 74,196 + PGA1_262p00640 0.11 +0.8 74,196 + PGA1_262p00640 0.11 -1.9 74,196 + PGA1_262p00640 0.11 -0.9 74,204 - PGA1_262p00640 0.11 -0.0 74,204 - PGA1_262p00640 0.11 -0.3 74,204 - PGA1_262p00640 0.11 -1.1 74,271 + PGA1_262p00640 0.18 +2.0 74,279 - PGA1_262p00640 0.18 +0.1 74,279 - PGA1_262p00640 0.18 +0.9 74,324 + PGA1_262p00640 0.23 -2.4 74,327 - PGA1_262p00640 0.23 -0.6 74,329 + PGA1_262p00640 0.23 -2.4 74,336 - PGA1_262p00640 0.24 +2.1 74,337 - PGA1_262p00640 0.24 +0.6 74,337 - PGA1_262p00640 0.24 -3.4 74,393 + PGA1_262p00640 0.29 +1.2 74,401 - PGA1_262p00640 0.30 -1.5 74,515 + PGA1_262p00640 0.40 +0.8 74,543 + PGA1_262p00640 0.43 +0.9 74,587 + PGA1_262p00640 0.47 +1.0 74,645 + PGA1_262p00640 0.52 +1.6 74,645 + PGA1_262p00640 0.52 +0.6 74,645 + PGA1_262p00640 0.52 -0.1 74,662 - PGA1_262p00640 0.54 -1.2 74,680 - PGA1_262p00640 0.55 -2.3 74,680 - PGA1_262p00640 0.55 +0.3 74,698 + PGA1_262p00640 0.57 +0.2 74,710 + PGA1_262p00640 0.58 -0.6 74,710 + PGA1_262p00640 0.58 +0.4 74,718 - PGA1_262p00640 0.59 -0.6 74,754 + PGA1_262p00640 0.62 -3.0
Or see this region's nucleotide sequence