Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00540 and PGA1_262p00550 are separated by 169 nucleotides PGA1_262p00550 and PGA1_262p00560 overlap by 1 nucleotides
PGA1_262p00540: PGA1_262p00540 - succinate-semialdehyde dehdyrogenase GabD, at 62,228 to 63,607
_262p00540
PGA1_262p00550: PGA1_262p00550 - putative DNA modification/repair radical SAM protein, at 63,777 to 65,033
_262p00550
PGA1_262p00560: PGA1_262p00560 - uracil DNA glycosylase-like protein, at 65,033 to 66,478
_262p00560
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 62.852 kb on + strand, within PGA1_262p00540 at 62.860 kb on - strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 63.015 kb on - strand, within PGA1_262p00540 at 63.054 kb on + strand, within PGA1_262p00540 at 63.124 kb on + strand, within PGA1_262p00540 at 63.172 kb on + strand, within PGA1_262p00540 at 63.182 kb on + strand, within PGA1_262p00540 at 63.190 kb on - strand, within PGA1_262p00540 at 63.206 kb on + strand, within PGA1_262p00540 at 63.284 kb on - strand, within PGA1_262p00540 at 63.409 kb on + strand, within PGA1_262p00540 at 63.425 kb on + strand, within PGA1_262p00540 at 63.517 kb on - strand at 63.547 kb on + strand at 63.602 kb on + strand at 63.629 kb on + strand at 63.655 kb on + strand at 63.819 kb on - strand at 63.916 kb on + strand, within PGA1_262p00550 at 64.240 kb on - strand, within PGA1_262p00550 at 64.342 kb on - strand, within PGA1_262p00550 at 64.376 kb on + strand, within PGA1_262p00550 at 64.475 kb on + strand, within PGA1_262p00550 at 64.592 kb on - strand, within PGA1_262p00550 at 64.654 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.856 kb on + strand, within PGA1_262p00550 at 64.986 kb on - strand at 65.069 kb on - strand at 65.074 kb on - strand at 65.087 kb on + strand at 65.173 kb on + strand at 65.175 kb on + strand at 65.486 kb on - strand, within PGA1_262p00560 at 65.527 kb on - strand, within PGA1_262p00560 at 65.596 kb on + strand, within PGA1_262p00560 at 65.619 kb on - strand, within PGA1_262p00560 at 65.681 kb on + strand, within PGA1_262p00560 at 66.019 kb on - strand, within PGA1_262p00560
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 62,852 + PGA1_262p00540 0.45 +2.0 62,860 - PGA1_262p00540 0.46 -3.6 62,989 + PGA1_262p00540 0.55 +0.7 62,989 + PGA1_262p00540 0.55 +0.7 62,989 + PGA1_262p00540 0.55 +1.9 62,989 + PGA1_262p00540 0.55 +1.3 62,989 + PGA1_262p00540 0.55 -2.1 62,997 - PGA1_262p00540 0.56 +3.3 62,997 - PGA1_262p00540 0.56 +0.3 62,997 - PGA1_262p00540 0.56 -1.7 63,015 - PGA1_262p00540 0.57 -0.3 63,054 + PGA1_262p00540 0.60 +0.4 63,124 + PGA1_262p00540 0.65 -1.2 63,172 + PGA1_262p00540 0.68 -0.5 63,182 + PGA1_262p00540 0.69 +0.1 63,190 - PGA1_262p00540 0.70 -0.2 63,206 + PGA1_262p00540 0.71 +0.2 63,284 - PGA1_262p00540 0.77 -0.9 63,409 + PGA1_262p00540 0.86 +0.9 63,425 + PGA1_262p00540 0.87 +0.3 63,517 - -1.0 63,547 + -1.9 63,602 + -1.3 63,629 + -0.3 63,655 + -1.9 63,819 - -0.2 63,916 + PGA1_262p00550 0.11 +0.8 64,240 - PGA1_262p00550 0.37 -0.3 64,342 - PGA1_262p00550 0.45 -0.9 64,376 + PGA1_262p00550 0.48 -0.6 64,475 + PGA1_262p00550 0.56 -0.6 64,592 - PGA1_262p00550 0.65 -2.1 64,654 - PGA1_262p00550 0.70 +0.6 64,793 - PGA1_262p00550 0.81 -0.0 64,793 - PGA1_262p00550 0.81 -1.8 64,856 + PGA1_262p00550 0.86 +0.5 64,986 - +1.7 65,069 - +0.5 65,074 - -1.6 65,087 + -3.4 65,173 + +0.6 65,175 + -2.7 65,486 - PGA1_262p00560 0.31 -0.5 65,527 - PGA1_262p00560 0.34 +1.9 65,596 + PGA1_262p00560 0.39 +1.0 65,619 - PGA1_262p00560 0.41 -1.0 65,681 + PGA1_262p00560 0.45 +1.8 66,019 - PGA1_262p00560 0.68 -1.9
Or see this region's nucleotide sequence