Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33130

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,471,939	+				-0.6
3,471,975	-				-1.8
3,472,072	+		PGA1_c33120	0.15	-0.9
3,472,106	-		PGA1_c33120	0.18	-0.7
3,472,106	-		PGA1_c33120	0.18	-2.6
3,472,230	+		PGA1_c33120	0.30	-0.4
3,472,242	-		PGA1_c33120	0.31	+2.4
3,472,253	+		PGA1_c33120	0.33	-1.5
3,472,285	-		PGA1_c33120	0.36	+0.0
3,472,317	+		PGA1_c33120	0.39	+1.0
3,472,325	-		PGA1_c33120	0.40	+0.5
3,472,326	-		PGA1_c33120	0.40	-2.5
3,472,351	+		PGA1_c33120	0.42	+0.1
3,472,351	+		PGA1_c33120	0.42	-1.0
3,472,351	+		PGA1_c33120	0.42	+0.9
3,472,351	+		PGA1_c33120	0.42	-2.4
3,472,359	-		PGA1_c33120	0.43	-2.0
3,472,359	-		PGA1_c33120	0.43	+0.6
3,472,416	+		PGA1_c33120	0.48	+0.3
3,472,431	+		PGA1_c33120	0.50	-0.9
3,472,431	+		PGA1_c33120	0.50	+0.7
3,472,431	+		PGA1_c33120	0.50	-0.3
3,472,431	+		PGA1_c33120	0.50	+1.8
3,472,431	+		PGA1_c33120	0.50	+1.2
3,472,431	+		PGA1_c33120	0.50	-3.6
3,472,439	-		PGA1_c33120	0.51	+0.3
3,472,439	-		PGA1_c33120	0.51	-3.5
3,472,439	-		PGA1_c33120	0.51	-1.5
3,472,439	-		PGA1_c33120	0.51	+0.5
3,472,439	-		PGA1_c33120	0.51	+0.0
3,472,439	-		PGA1_c33120	0.51	+0.4
3,472,439	-		PGA1_c33120	0.51	-1.5
3,472,439	-		PGA1_c33120	0.51	-1.8
3,472,458	-		PGA1_c33120	0.52	+0.0
3,472,476	+		PGA1_c33120	0.54	-0.0
3,472,481	+		PGA1_c33120	0.55	+0.5
3,472,484	-		PGA1_c33120	0.55	+1.4
3,472,484	-		PGA1_c33120	0.55	+0.4
3,472,530	-		PGA1_c33120	0.59	-0.9
3,472,530	-		PGA1_c33120	0.59	-0.1
3,472,559	-		PGA1_c33120	0.62	+0.3
3,472,623	-		PGA1_c33120	0.69	-1.9
3,472,623	-		PGA1_c33120	0.69	+0.7
3,472,630	+		PGA1_c33120	0.69	-0.9
3,472,640	+		PGA1_c33120	0.70	-2.1
3,472,640	+		PGA1_c33120	0.70	-0.6
3,472,648	-		PGA1_c33120	0.71	-3.4
3,472,648	-		PGA1_c33120	0.71	+3.1
3,472,650	+		PGA1_c33120	0.71	+0.3
3,472,663	-		PGA1_c33120	0.72	-0.2
3,472,673	-		PGA1_c33120	0.73	+0.6
3,472,718	+		PGA1_c33120	0.78	+0.2
3,472,752	+		PGA1_c33120	0.81	+1.4
3,472,752	+		PGA1_c33120	0.81	+2.4
3,472,762	-		PGA1_c33120	0.82	+0.6
3,472,827	-		PGA1_c33120	0.88	-0.1
3,472,847	+				-1.8
3,472,901	-				+1.1
3,472,915	+				+0.9
3,472,922	-				-2.4
3,472,922	-				+0.4
3,472,922	-				+0.9
3,472,922	-				+1.4
3,472,922	-				+0.1
3,472,922	-				-0.7
3,472,965	-				+1.8
3,472,972	-				+0.0
3,473,162	+				-0.0
3,473,196	+		PGA1_c33130	0.11	-0.2
3,473,196	+		PGA1_c33130	0.11	-1.3
3,473,204	-		PGA1_c33130	0.11	+1.5
3,473,204	-		PGA1_c33130	0.11	+0.4
3,473,204	-		PGA1_c33130	0.11	-2.6
3,473,204	-		PGA1_c33130	0.11	+1.4
3,473,275	+		PGA1_c33130	0.14	+5.1
3,473,282	-		PGA1_c33130	0.15	-2.0
3,473,285	+		PGA1_c33130	0.15	+0.4
3,473,314	-		PGA1_c33130	0.16	+0.7
3,473,327	-		PGA1_c33130	0.16	-0.6
3,473,435	-		PGA1_c33130	0.21	+0.5
3,473,444	+		PGA1_c33130	0.21	-0.3
3,473,450	-		PGA1_c33130	0.21	+2.1
3,473,511	+		PGA1_c33130	0.24	-3.0
3,473,534	-		PGA1_c33130	0.25	+0.2
3,473,535	-		PGA1_c33130	0.25	-0.5
3,473,541	-		PGA1_c33130	0.25	+1.2
3,473,541	-		PGA1_c33130	0.25	-1.6
3,473,563	-		PGA1_c33130	0.26	-0.2
3,473,611	+		PGA1_c33130	0.28	+0.9
3,473,621	+		PGA1_c33130	0.28	-3.4
3,473,700	-		PGA1_c33130	0.32	-0.2
3,473,714	-		PGA1_c33130	0.32	+1.0
3,473,718	+		PGA1_c33130	0.32	-1.9
3,473,720	+		PGA1_c33130	0.32	-0.3
3,473,728	-		PGA1_c33130	0.33	+0.4
3,473,797	-		PGA1_c33130	0.36	-0.2
3,473,804	+		PGA1_c33130	0.36	+0.8
3,473,804	+		PGA1_c33130	0.36	-1.1
3,473,845	+		PGA1_c33130	0.38	+1.7
3,473,891	-		PGA1_c33130	0.39	+0.4
3,473,931	+		PGA1_c33130	0.41	+0.3
3,473,937	+		PGA1_c33130	0.41	-1.3
3,473,945	-		PGA1_c33130	0.42	+0.5
3,473,974	+		PGA1_c33130	0.43	+0.6
3,473,982	-		PGA1_c33130	0.43	-0.0
3,474,141	+		PGA1_c33130	0.50	+0.7
3,474,149	-		PGA1_c33130	0.50	+0.7
3,474,149	-		PGA1_c33130	0.50	-3.5
3,474,274	-		PGA1_c33130	0.55	+2.2
3,474,279	-		PGA1_c33130	0.55	+0.3
3,474,303	+		PGA1_c33130	0.56	-0.6
3,474,337	+		PGA1_c33130	0.58	+2.0
3,474,393	+		PGA1_c33130	0.60	+0.5
3,474,393	+		PGA1_c33130	0.60	-1.3
3,474,393	+		PGA1_c33130	0.60	+0.4
3,474,401	-		PGA1_c33130	0.60	+1.4
3,474,524	+		PGA1_c33130	0.65	-0.0
3,474,532	+		PGA1_c33130	0.66	+0.7
3,474,532	-		PGA1_c33130	0.66	+3.1
3,474,532	-		PGA1_c33130	0.66	+1.8
3,474,540	-		PGA1_c33130	0.66	-0.0
3,474,545	-		PGA1_c33130	0.66	+0.5
3,474,552	+		PGA1_c33130	0.66	+0.3
3,474,552	+		PGA1_c33130	0.66	+0.8
3,474,563	+		PGA1_c33130	0.67	+1.2
3,474,599	-		PGA1_c33130	0.68	-1.2
3,474,630	+		PGA1_c33130	0.70	+1.5
3,474,642	-		PGA1_c33130	0.70	-1.1
3,474,642	-		PGA1_c33130	0.70	+1.0
3,474,642	-		PGA1_c33130	0.70	+3.2
3,474,664	+		PGA1_c33130	0.71	+0.7
3,474,694	+		PGA1_c33130	0.72	+0.8
3,474,694	+		PGA1_c33130	0.72	+0.6
3,474,694	+		PGA1_c33130	0.72	+0.2
3,474,694	+		PGA1_c33130	0.72	-1.6
3,474,702	-		PGA1_c33130	0.73	-0.9
3,474,704	+		PGA1_c33130	0.73	+1.4
3,474,728	-		PGA1_c33130	0.74	+0.9
3,474,738	+		PGA1_c33130	0.74	+0.4
3,474,769	-		PGA1_c33130	0.75	+0.4
3,474,856	-		PGA1_c33130	0.79	-0.1
3,474,887	+		PGA1_c33130	0.80	+0.3
3,474,887	+		PGA1_c33130	0.80	-1.7
3,474,887	+		PGA1_c33130	0.80	+1.8
3,474,895	-		PGA1_c33130	0.80	+2.9
3,474,895	-		PGA1_c33130	0.80	+0.4
3,474,895	-		PGA1_c33130	0.80	-0.5
3,474,895	-		PGA1_c33130	0.80	+0.5
3,474,895	-		PGA1_c33130	0.80	-1.2
3,474,895	-		PGA1_c33130	0.80	+0.6
3,474,895	-		PGA1_c33130	0.80	-3.0
3,474,895	-		PGA1_c33130	0.80	+0.8
3,474,938	+		PGA1_c33130	0.82	+0.2
3,474,938	+		PGA1_c33130	0.82	+0.1
3,474,946	+		PGA1_c33130	0.82	+0.4
3,474,989	+		PGA1_c33130	0.84	-1.1
3,474,990	+		PGA1_c33130	0.84	+1.5
3,474,999	+		PGA1_c33130	0.85	+0.5
3,475,007	-		PGA1_c33130	0.85	+1.3
3,475,007	-		PGA1_c33130	0.85	+0.9
3,475,012	-		PGA1_c33130	0.85	+1.2
3,475,036	-		PGA1_c33130	0.86	-0.2
3,475,094	-		PGA1_c33130	0.89	-0.9
3,475,100	+		PGA1_c33130	0.89	+0.2
3,475,108	-		PGA1_c33130	0.89	-0.9
3,475,118	-		PGA1_c33130	0.90	-0.8
3,475,141	+				-3.4
3,475,141	+				+1.5
3,475,141	+				-2.7
3,475,149	-				+0.4
3,475,174	-				-2.1
3,475,318	+				-0.3
3,475,326	-				+0.5
3,475,326	-				+2.8
3,475,436	-		PGA1_c33140	0.12	-0.8
3,475,457	-		PGA1_c33140	0.18	+0.1
3,475,498	+		PGA1_c33140	0.29	-2.6
3,475,506	-		PGA1_c33140	0.31	-1.5
3,475,522	-		PGA1_c33140	0.35	+0.2
3,475,566	-		PGA1_c33140	0.47	-0.2
3,475,577	-		PGA1_c33140	0.50	-0.4
3,475,596	-		PGA1_c33140	0.55	-0.1
3,475,636	+		PGA1_c33140	0.66	-1.6
3,475,636	+		PGA1_c33140	0.66	-0.1
3,475,636	+		PGA1_c33140	0.66	-2.3
3,475,636	+		PGA1_c33140	0.66	-0.6
3,475,636	+		PGA1_c33140	0.66	+1.6
3,475,636	+		PGA1_c33140	0.66	-0.3
3,475,636	+		PGA1_c33140	0.66	-1.5
3,475,636	+		PGA1_c33140	0.66	-1.3
3,475,644	-		PGA1_c33140	0.68	+0.8
3,475,644	-		PGA1_c33140	0.68	+1.2
3,475,644	-		PGA1_c33140	0.68	-2.8
3,475,644	-		PGA1_c33140	0.68	+1.0
3,475,644	-		PGA1_c33140	0.68	+1.7
3,475,644	-		PGA1_c33140	0.68	-0.3
3,475,644	-		PGA1_c33140	0.68	+1.4
3,475,703	+		PGA1_c33140	0.84	+1.6
3,475,752	+				+0.7
3,475,752	-				-1.2
3,475,759	-				-0.4
3,475,760	-				+0.8
3,475,760	-				-2.8
3,475,801	-				-0.9
3,475,837	-		PGA1_c33150	0.12	-2.4
3,475,844	-		PGA1_c33150	0.13	+0.9
3,475,845	-		PGA1_c33150	0.14	+1.9
3,475,860	-		PGA1_c33150	0.16	-0.6
3,475,884	+		PGA1_c33150	0.20	-1.1
3,475,889	+		PGA1_c33150	0.21	+0.6
3,475,889	+		PGA1_c33150	0.21	-0.1
3,475,897	-		PGA1_c33150	0.22	+0.5
3,475,923	-		PGA1_c33150	0.26	-0.3
3,475,925	+		PGA1_c33150	0.26	-1.0
3,475,938	-		PGA1_c33150	0.28	+0.1
3,475,938	-		PGA1_c33150	0.28	+0.3
3,475,938	-		PGA1_c33150	0.28	-0.5
3,475,943	+		PGA1_c33150	0.29	-2.6
3,475,943	+		PGA1_c33150	0.29	-3.3
3,475,951	-		PGA1_c33150	0.30	-1.0
3,475,957	+		PGA1_c33150	0.31	-0.4
3,475,957	+		PGA1_c33150	0.31	+2.1
3,476,127	+		PGA1_c33150	0.58	-3.1
3,476,127	+		PGA1_c33150	0.58	+0.1
3,476,127	+		PGA1_c33150	0.58	+0.2
3,476,127	+		PGA1_c33150	0.58	-3.2
3,476,135	-		PGA1_c33150	0.60	-2.8
3,476,135	-		PGA1_c33150	0.60	+0.1
3,476,135	-		PGA1_c33150	0.60	-1.0
3,476,135	-		PGA1_c33150	0.60	+1.1
3,476,158	-		PGA1_c33150	0.63	-0.2
3,476,244	+		PGA1_c33150	0.77	+0.6
3,476,254	+		PGA1_c33150	0.79	-0.6
3,476,257	-		PGA1_c33150	0.79	-1.5
3,476,278	+		PGA1_c33150	0.82	-2.7
3,476,283	+		PGA1_c33150	0.83	+0.7
3,476,284	+		PGA1_c33150	0.83	-0.7
3,476,292	-		PGA1_c33150	0.85	+0.5
3,476,325	+		PGA1_c33150	0.90	+0.8
3,476,325	+		PGA1_c33150	0.90	-1.0
3,476,333	-				-0.6
3,476,333	-				+0.9
3,476,346	-				+0.5
3,476,348	+				+0.2