Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33110

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,468,378	+				+1.3
3,468,396	-				+1.3
3,468,502	+		PGA1_c33100	0.24	+0.1
3,468,528	-		PGA1_c33100	0.27	-1.1
3,468,571	+		PGA1_c33100	0.32	-1.8
3,468,613	-		PGA1_c33100	0.37	-0.2
3,468,636	+		PGA1_c33100	0.39	-2.1
3,468,641	+		PGA1_c33100	0.40	+0.4
3,468,645	-		PGA1_c33100	0.40	+0.5
3,468,715	-		PGA1_c33100	0.48	-0.1
3,468,715	-		PGA1_c33100	0.48	-1.7
3,468,785	+		PGA1_c33100	0.56	+0.2
3,468,793	-		PGA1_c33100	0.57	+0.3
3,468,793	-		PGA1_c33100	0.57	-1.5
3,468,812	+		PGA1_c33100	0.59	-2.2
3,468,812	+		PGA1_c33100	0.59	+1.1
3,468,824	+		PGA1_c33100	0.61	-1.1
3,468,824	+		PGA1_c33100	0.61	-0.3
3,468,869	-		PGA1_c33100	0.66	+1.8
3,468,886	+		PGA1_c33100	0.67	-3.1
3,468,916	+		PGA1_c33100	0.71	-1.0
3,468,929	-		PGA1_c33100	0.72	+1.5
3,468,961	+		PGA1_c33100	0.76	-0.4
3,468,961	+		PGA1_c33100	0.76	-0.1
3,468,969	-		PGA1_c33100	0.77	-2.8
3,468,969	-		PGA1_c33100	0.77	-1.0
3,469,011	-		PGA1_c33100	0.81	-0.9
3,469,023	+		PGA1_c33100	0.83	+0.3
3,469,036	-		PGA1_c33100	0.84	-0.4
3,469,092	-				-3.9
3,469,138	+				+0.7
3,469,138	+				-0.6
3,469,140	+				-0.4
3,469,230	-				+2.0
3,469,245	+				-0.6
3,469,253	-				+1.9
3,469,270	+				+0.5
3,469,275	+				+0.2
3,469,275	+				-0.2
3,469,275	+				+1.8
3,469,278	-				-0.1
3,469,279	-				-1.9
3,469,283	-				+0.8
3,469,283	-				-1.3
3,469,283	-				-3.9
3,469,283	-				-0.5
3,469,288	-				+0.9
3,469,312	+				-3.3
3,469,312	+				-0.6
3,469,337	-				-3.6
3,469,378	+				-1.8
3,469,386	-				-1.0
3,469,386	-				-0.4
3,469,414	+				+0.3
3,469,421	+				+1.2
3,469,448	+				-0.4
3,469,455	+				+0.3
3,469,457	-				+2.0
3,469,497	+				-0.5
3,469,497	+				+2.9
3,469,525	+				+0.5
3,469,545	+				-0.3
3,469,559	-				+2.1
3,469,609	-		PGA1_c33110	0.10	+0.8
3,469,659	+		PGA1_c33110	0.12	-0.6
3,469,659	+		PGA1_c33110	0.12	-0.1
3,469,659	+		PGA1_c33110	0.12	+1.4
3,469,659	+		PGA1_c33110	0.12	+0.9
3,469,659	+		PGA1_c33110	0.12	+0.7
3,469,713	+		PGA1_c33110	0.14	+0.1
3,469,713	+		PGA1_c33110	0.14	-0.1
3,469,713	+		PGA1_c33110	0.14	+0.3
3,469,713	+		PGA1_c33110	0.14	+0.0
3,469,721	-		PGA1_c33110	0.15	+1.1
3,469,721	-		PGA1_c33110	0.15	+0.2
3,469,721	-		PGA1_c33110	0.15	+1.1
3,469,721	-		PGA1_c33110	0.15	-1.1
3,469,721	-		PGA1_c33110	0.15	-3.0
3,469,721	-		PGA1_c33110	0.15	+1.9
3,469,721	-		PGA1_c33110	0.15	-0.1
3,469,799	-		PGA1_c33110	0.18	-1.5
3,469,818	-		PGA1_c33110	0.19	-0.3
3,469,838	-		PGA1_c33110	0.20	+1.7
3,469,838	-		PGA1_c33110	0.20	-0.0
3,469,840	+		PGA1_c33110	0.20	-1.2
3,469,878	-		PGA1_c33110	0.21	+1.2
3,469,928	+		PGA1_c33110	0.23	-0.0
3,469,938	-		PGA1_c33110	0.24	+0.2
3,469,940	+		PGA1_c33110	0.24	-1.5
3,469,942	+		PGA1_c33110	0.24	-0.9
3,469,942	+		PGA1_c33110	0.24	-0.4
3,469,950	-		PGA1_c33110	0.24	+1.6
3,469,955	-		PGA1_c33110	0.24	+1.8
3,469,967	-		PGA1_c33110	0.25	-1.4
3,469,998	+		PGA1_c33110	0.26	-0.3
3,470,078	-		PGA1_c33110	0.29	+0.6
3,470,079	+		PGA1_c33110	0.29	+1.3
3,470,094	+		PGA1_c33110	0.30	-0.4
3,470,121	+		PGA1_c33110	0.31	+0.9
3,470,258	+		PGA1_c33110	0.37	-0.9
3,470,264	+		PGA1_c33110	0.37	+0.5
3,470,264	+		PGA1_c33110	0.37	-2.2
3,470,319	+		PGA1_c33110	0.39	+0.1
3,470,368	+		PGA1_c33110	0.41	+0.3
3,470,368	+		PGA1_c33110	0.41	+0.5
3,470,368	+		PGA1_c33110	0.41	+0.3
3,470,368	+		PGA1_c33110	0.41	-0.2
3,470,370	+		PGA1_c33110	0.41	-2.4
3,470,376	-		PGA1_c33110	0.41	+0.4
3,470,376	-		PGA1_c33110	0.41	-2.5
3,470,376	-		PGA1_c33110	0.41	-2.0
3,470,381	-		PGA1_c33110	0.42	-1.5
3,470,381	-		PGA1_c33110	0.42	+0.7
3,470,381	-		PGA1_c33110	0.42	+2.0
3,470,441	-		PGA1_c33110	0.44	-0.2
3,470,518	-		PGA1_c33110	0.47	+1.5
3,470,518	-		PGA1_c33110	0.47	-2.1
3,470,525	+		PGA1_c33110	0.48	-2.7
3,470,533	-		PGA1_c33110	0.48	+3.3
3,470,533	-		PGA1_c33110	0.48	-0.9
3,470,555	+		PGA1_c33110	0.49	+0.3
3,470,578	+		PGA1_c33110	0.50	-2.2
3,470,578	+		PGA1_c33110	0.50	-0.1
3,470,578	+		PGA1_c33110	0.50	-3.2
3,470,586	-		PGA1_c33110	0.50	+2.1
3,470,588	+		PGA1_c33110	0.50	+1.4
3,470,591	-		PGA1_c33110	0.50	+0.3
3,470,596	-		PGA1_c33110	0.50	-0.9
3,470,626	-		PGA1_c33110	0.52	+1.3
3,470,681	+		PGA1_c33110	0.54	-1.4
3,470,701	-		PGA1_c33110	0.55	-3.9
3,470,711	+		PGA1_c33110	0.55	+0.4
3,470,712	+		PGA1_c33110	0.55	+1.1
3,470,720	-		PGA1_c33110	0.56	-0.9
3,470,720	-		PGA1_c33110	0.56	-0.7
3,470,720	-		PGA1_c33110	0.56	+1.7
3,470,751	+		PGA1_c33110	0.57	+0.1
3,470,772	+		PGA1_c33110	0.58	-2.2
3,470,775	-		PGA1_c33110	0.58	+0.8
3,470,848	+		PGA1_c33110	0.61	-0.7
3,470,905	+		PGA1_c33110	0.63	-0.6
3,470,913	-		PGA1_c33110	0.63	+0.3
3,470,952	+		PGA1_c33110	0.65	-0.6
3,470,961	+		PGA1_c33110	0.65	+2.5
3,470,977	+		PGA1_c33110	0.66	-0.2
3,470,979	-		PGA1_c33110	0.66	+1.1
3,470,998	-		PGA1_c33110	0.67	+1.1
3,471,033	-		PGA1_c33110	0.68	+0.1
3,471,079	-		PGA1_c33110	0.70	+0.2
3,471,081	+		PGA1_c33110	0.70	-0.8
3,471,163	+		PGA1_c33110	0.74	+3.3
3,471,172	+		PGA1_c33110	0.74	+1.3
3,471,180	+		PGA1_c33110	0.74	+3.7
3,471,180	+		PGA1_c33110	0.74	-2.8
3,471,193	-		PGA1_c33110	0.75	+0.8
3,471,317	-		PGA1_c33110	0.80	+0.4
3,471,322	+		PGA1_c33110	0.80	-0.1
3,471,322	+		PGA1_c33110	0.80	-0.4
3,471,322	+		PGA1_c33110	0.80	-2.3
3,471,322	+		PGA1_c33110	0.80	-2.4
3,471,322	+		PGA1_c33110	0.80	-1.1
3,471,322	+		PGA1_c33110	0.80	-0.5
3,471,322	+		PGA1_c33110	0.80	+1.7
3,471,322	+		PGA1_c33110	0.80	-1.1
3,471,322	+		PGA1_c33110	0.80	+0.0
3,471,330	-		PGA1_c33110	0.80	-0.0
3,471,330	-		PGA1_c33110	0.80	-1.8
3,471,330	-		PGA1_c33110	0.80	-0.4
3,471,330	-		PGA1_c33110	0.80	+1.0
3,471,330	-		PGA1_c33110	0.80	+1.1
3,471,330	-		PGA1_c33110	0.80	-0.4
3,471,521	+		PGA1_c33110	0.88	+1.7
3,471,529	-		PGA1_c33110	0.89	+2.1
3,471,529	-		PGA1_c33110	0.89	-2.8
3,471,565	+				-0.6
3,471,593	+				+0.8
3,471,594	-				-0.1
3,471,647	-				-0.2
3,471,653	+				-1.0
3,471,712	-				-0.2
3,471,712	-				-0.2
3,471,734	+				-2.2
3,471,781	+				+1.8
3,471,825	-				-1.1
3,471,846	+				+0.8
3,471,846	+				-1.3
3,471,846	+				-0.9
3,471,905	+				+0.7
3,471,905	+				+1.5
3,471,907	+				+3.1
3,471,910	-				+0.3
3,471,939	+				-0.6
3,471,975	-				-1.8
3,472,072	+		PGA1_c33120	0.15	-0.9
3,472,106	-		PGA1_c33120	0.18	-0.7
3,472,106	-		PGA1_c33120	0.18	-2.6
3,472,230	+		PGA1_c33120	0.30	-0.4
3,472,242	-		PGA1_c33120	0.31	+2.4
3,472,253	+		PGA1_c33120	0.33	-1.5
3,472,285	-		PGA1_c33120	0.36	+0.0
3,472,317	+		PGA1_c33120	0.39	+1.0
3,472,325	-		PGA1_c33120	0.40	+0.5
3,472,326	-		PGA1_c33120	0.40	-2.5
3,472,351	+		PGA1_c33120	0.42	+0.1
3,472,351	+		PGA1_c33120	0.42	-1.0
3,472,351	+		PGA1_c33120	0.42	+0.9
3,472,351	+		PGA1_c33120	0.42	-2.4
3,472,359	-		PGA1_c33120	0.43	-2.0
3,472,359	-		PGA1_c33120	0.43	+0.6
3,472,416	+		PGA1_c33120	0.48	+0.3
3,472,431	+		PGA1_c33120	0.50	-0.9
3,472,431	+		PGA1_c33120	0.50	+0.7
3,472,431	+		PGA1_c33120	0.50	-0.3
3,472,431	+		PGA1_c33120	0.50	+1.8
3,472,431	+		PGA1_c33120	0.50	+1.2
3,472,431	+		PGA1_c33120	0.50	-3.6
3,472,439	-		PGA1_c33120	0.51	+0.3
3,472,439	-		PGA1_c33120	0.51	-3.5
3,472,439	-		PGA1_c33120	0.51	-1.5
3,472,439	-		PGA1_c33120	0.51	+0.5
3,472,439	-		PGA1_c33120	0.51	+0.0
3,472,439	-		PGA1_c33120	0.51	+0.4
3,472,439	-		PGA1_c33120	0.51	-1.5
3,472,439	-		PGA1_c33120	0.51	-1.8
3,472,458	-		PGA1_c33120	0.52	+0.0
3,472,476	+		PGA1_c33120	0.54	-0.0
3,472,481	+		PGA1_c33120	0.55	+0.5
3,472,484	-		PGA1_c33120	0.55	+1.4
3,472,484	-		PGA1_c33120	0.55	+0.4
3,472,530	-		PGA1_c33120	0.59	-0.9
3,472,530	-		PGA1_c33120	0.59	-0.1
3,472,559	-		PGA1_c33120	0.62	+0.3
3,472,623	-		PGA1_c33120	0.69	-1.9
3,472,623	-		PGA1_c33120	0.69	+0.7
3,472,630	+		PGA1_c33120	0.69	-0.9
3,472,640	+		PGA1_c33120	0.70	-2.1
3,472,640	+		PGA1_c33120	0.70	-0.6
3,472,648	-		PGA1_c33120	0.71	-3.4
3,472,648	-		PGA1_c33120	0.71	+3.1
3,472,650	+		PGA1_c33120	0.71	+0.3
3,472,663	-		PGA1_c33120	0.72	-0.2
3,472,673	-		PGA1_c33120	0.73	+0.6
3,472,718	+		PGA1_c33120	0.78	+0.2
3,472,752	+		PGA1_c33120	0.81	+1.4
3,472,752	+		PGA1_c33120	0.81	+2.4
3,472,762	-		PGA1_c33120	0.82	+0.6