Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30840

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,220,468	-		PGA1_c30830	0.25	+0.7
3,220,548	+		PGA1_c30830	0.31	+0.1
3,220,549	-		PGA1_c30830	0.31	+0.4
3,220,556	-		PGA1_c30830	0.32	+0.5
3,220,556	-		PGA1_c30830	0.32	-1.3
3,220,563	-		PGA1_c30830	0.33	+0.9
3,220,563	-		PGA1_c30830	0.33	-1.8
3,220,619	+		PGA1_c30830	0.37	+1.4
3,220,640	-		PGA1_c30830	0.39	+0.5
3,220,641	-		PGA1_c30830	0.39	-1.0
3,220,677	+		PGA1_c30830	0.42	+2.4
3,220,677	+		PGA1_c30830	0.42	+0.4
3,220,685	-		PGA1_c30830	0.42	+0.1
3,220,716	-		PGA1_c30830	0.45	+3.5
3,220,739	-		PGA1_c30830	0.47	+0.2
3,220,742	+		PGA1_c30830	0.47	+0.9
3,220,758	+		PGA1_c30830	0.48	+0.3
3,220,789	+		PGA1_c30830	0.51	-0.7
3,220,789	+		PGA1_c30830	0.51	-1.3
3,220,789	+		PGA1_c30830	0.51	-1.1
3,220,789	+		PGA1_c30830	0.51	-2.3
3,220,789	+		PGA1_c30830	0.51	+0.2
3,220,789	+		PGA1_c30830	0.51	+2.4
3,220,789	+		PGA1_c30830	0.51	-3.0
3,220,789	+		PGA1_c30830	0.51	-0.7
3,220,789	+		PGA1_c30830	0.51	+1.7
3,220,789	+		PGA1_c30830	0.51	+1.0
3,220,789	+		PGA1_c30830	0.51	+2.3
3,220,789	+		PGA1_c30830	0.51	+0.2
3,220,789	+		PGA1_c30830	0.51	+0.2
3,220,789	+		PGA1_c30830	0.51	-0.4
3,220,789	+		PGA1_c30830	0.51	+0.2
3,220,789	+		PGA1_c30830	0.51	-1.5
3,220,789	+		PGA1_c30830	0.51	-1.5
3,220,789	+		PGA1_c30830	0.51	-0.6
3,220,789	+		PGA1_c30830	0.51	+1.2
3,220,789	+		PGA1_c30830	0.51	-1.5
3,220,789	+		PGA1_c30830	0.51	+1.0
3,220,789	+		PGA1_c30830	0.51	+1.2
3,220,789	+		PGA1_c30830	0.51	-1.3
3,220,797	-		PGA1_c30830	0.51	+1.5
3,220,797	-		PGA1_c30830	0.51	+1.0
3,220,797	-		PGA1_c30830	0.51	+1.6
3,220,797	-		PGA1_c30830	0.51	+0.4
3,220,797	-		PGA1_c30830	0.51	+1.2
3,220,797	-		PGA1_c30830	0.51	+1.4
3,220,797	-		PGA1_c30830	0.51	-2.5
3,220,797	-		PGA1_c30830	0.51	+1.1
3,220,797	-		PGA1_c30830	0.51	-1.6
3,220,797	-		PGA1_c30830	0.51	+1.0
3,220,797	-		PGA1_c30830	0.51	+0.5
3,220,797	-		PGA1_c30830	0.51	+1.8
3,220,797	-		PGA1_c30830	0.51	+2.8
3,220,799	+		PGA1_c30830	0.52	+0.1
3,220,799	+		PGA1_c30830	0.52	+0.0
3,220,799	+		PGA1_c30830	0.52	+0.0
3,220,799	+		PGA1_c30830	0.52	+1.2
3,220,799	+		PGA1_c30830	0.52	+1.4
3,220,799	+		PGA1_c30830	0.52	+1.1
3,220,801	+		PGA1_c30830	0.52	-0.7
3,220,801	+		PGA1_c30830	0.52	-0.3
3,220,807	+		PGA1_c30830	0.52	-0.4
3,220,809	-		PGA1_c30830	0.52	+0.1
3,220,812	+		PGA1_c30830	0.53	+0.3
3,220,817	+		PGA1_c30830	0.53	+1.1
3,220,917	+		PGA1_c30830	0.61	+1.1
3,220,927	+		PGA1_c30830	0.62	+0.4
3,220,936	-		PGA1_c30830	0.62	-3.2
3,220,986	+		PGA1_c30830	0.67	+0.9
3,220,986	+		PGA1_c30830	0.67	-1.0
3,221,006	+		PGA1_c30830	0.68	+1.8
3,221,006	+		PGA1_c30830	0.68	+1.7
3,221,007	+		PGA1_c30830	0.68	+0.6
3,221,007	+		PGA1_c30830	0.68	-1.6
3,221,015	-		PGA1_c30830	0.69	+0.1
3,221,043	+		PGA1_c30830	0.71	-0.3
3,221,056	-		PGA1_c30830	0.72	+0.3
3,221,062	-		PGA1_c30830	0.73	+1.2
3,221,071	+		PGA1_c30830	0.73	+1.1
3,221,071	-		PGA1_c30830	0.73	+0.4
3,221,071	-		PGA1_c30830	0.73	-1.3
3,221,079	-		PGA1_c30830	0.74	+3.0
3,221,079	-		PGA1_c30830	0.74	+1.1
3,221,079	-		PGA1_c30830	0.74	+0.1
3,221,079	-		PGA1_c30830	0.74	-1.3
3,221,093	+		PGA1_c30830	0.75	+2.2
3,221,133	+		PGA1_c30830	0.78	+1.4
3,221,133	+		PGA1_c30830	0.78	-0.6
3,221,133	+		PGA1_c30830	0.78	+1.6
3,221,133	+		PGA1_c30830	0.78	+1.0
3,221,141	-		PGA1_c30830	0.79	-0.0
3,221,142	-		PGA1_c30830	0.79	+1.3
3,221,155	+		PGA1_c30830	0.80	+0.5
3,221,163	-		PGA1_c30830	0.81	+1.5
3,221,163	-		PGA1_c30830	0.81	-0.7
3,221,195	+		PGA1_c30830	0.83	+1.1
3,221,263	-		PGA1_c30830	0.89	+1.2
3,221,319	+				+2.2
3,221,351	+				-1.5
3,221,369	-				-0.4
3,221,405	-				-0.0
3,221,437	+				+0.1
3,221,472	+				+0.0
3,221,522	+				+1.3
3,221,522	+				-1.8
3,221,522	+				+0.1
3,221,530	-				-3.1
3,221,530	-				+2.5
3,221,530	-				-0.2
3,221,539	+				+0.9
3,221,553	-		PGA1_c30840	0.11	-0.5
3,221,574	-		PGA1_c30840	0.13	+0.5
3,221,574	-		PGA1_c30840	0.13	+0.5
3,221,629	+		PGA1_c30840	0.20	+1.3
3,221,635	+		PGA1_c30840	0.21	+2.5
3,221,639	+		PGA1_c30840	0.21	+0.3
3,221,691	-		PGA1_c30840	0.27	+1.3
3,221,728	+		PGA1_c30840	0.32	+0.3
3,221,736	-		PGA1_c30840	0.33	+1.9
3,221,759	-		PGA1_c30840	0.35	+0.5
3,221,841	+		PGA1_c30840	0.45	+0.3
3,221,841	+		PGA1_c30840	0.45	+1.5
3,221,841	+		PGA1_c30840	0.45	+0.3
3,221,841	+		PGA1_c30840	0.45	-1.4
3,221,844	-		PGA1_c30840	0.46	+1.8
3,221,844	-		PGA1_c30840	0.46	+1.2
3,221,844	-		PGA1_c30840	0.46	+1.5
3,221,849	-		PGA1_c30840	0.46	-0.5
3,221,849	-		PGA1_c30840	0.46	-1.2
3,221,849	-		PGA1_c30840	0.46	+1.5
3,221,849	-		PGA1_c30840	0.46	-0.5
3,221,849	-		PGA1_c30840	0.46	-3.0
3,221,870	+		PGA1_c30840	0.49	+1.8
3,221,880	+		PGA1_c30840	0.50	+0.2
3,221,880	+		PGA1_c30840	0.50	+2.2
3,221,883	-		PGA1_c30840	0.50	-1.0
3,221,892	-		PGA1_c30840	0.52	-1.3
3,221,914	-		PGA1_c30840	0.54	+0.9
3,221,926	+		PGA1_c30840	0.56	+0.7
3,221,926	+		PGA1_c30840	0.56	+0.5
3,221,932	+		PGA1_c30840	0.56	+0.3
3,221,980	+		PGA1_c30840	0.62	+2.2
3,221,980	+		PGA1_c30840	0.62	+1.0
3,221,982	+		PGA1_c30840	0.62	-2.4
3,221,982	+		PGA1_c30840	0.62	+0.4
3,221,982	+		PGA1_c30840	0.62	-3.2
3,221,994	+		PGA1_c30840	0.64	-0.4
3,222,000	+		PGA1_c30840	0.65	+0.4
3,222,000	+		PGA1_c30840	0.65	-2.2
3,222,000	+		PGA1_c30840	0.65	-0.5
3,222,002	-		PGA1_c30840	0.65	+0.0
3,222,008	-		PGA1_c30840	0.65	-0.3
3,222,047	-		PGA1_c30840	0.70	-1.0
3,222,061	+		PGA1_c30840	0.72	+1.4
3,222,121	-		PGA1_c30840	0.79	+0.6
3,222,121	-		PGA1_c30840	0.79	+0.4
3,222,131	-		PGA1_c30840	0.80	+0.5
3,222,138	+		PGA1_c30840	0.81	+0.1
3,222,138	+		PGA1_c30840	0.81	-0.8
3,222,146	-		PGA1_c30840	0.82	-0.3
3,222,146	-		PGA1_c30840	0.82	+2.8
3,222,167	+		PGA1_c30840	0.85	-1.6
3,222,175	-		PGA1_c30840	0.86	+0.1
3,222,197	-		PGA1_c30840	0.88	-2.2
3,222,203	-		PGA1_c30840	0.89	+0.4
3,222,225	+				+2.2
3,222,235	+				+0.7
3,222,235	+				-1.5
3,222,235	+				+0.4
3,222,235	+				+1.2
3,222,243	-				+0.3
3,222,267	+				-0.9
3,222,278	+				-2.5
3,222,394	+		PGA1_c30850	0.12	-1.6
3,222,394	+		PGA1_c30850	0.12	+2.0
3,222,394	+		PGA1_c30850	0.12	-0.3
3,222,402	-		PGA1_c30850	0.13	+2.9
3,222,434	+		PGA1_c30850	0.17	+1.9
3,222,434	+		PGA1_c30850	0.17	+2.8
3,222,434	+		PGA1_c30850	0.17	-0.7
3,222,452	+		PGA1_c30850	0.19	-2.3
3,222,452	-		PGA1_c30850	0.19	+2.0
3,222,487	-		PGA1_c30850	0.23	-2.0
3,222,492	+		PGA1_c30850	0.24	-2.7
3,222,502	+		PGA1_c30850	0.25	+0.9
3,222,512	+		PGA1_c30850	0.26	-1.5
3,222,528	+		PGA1_c30850	0.28	+0.5
3,222,535	+		PGA1_c30850	0.29	-0.6
3,222,541	-		PGA1_c30850	0.29	+2.2
3,222,544	+		PGA1_c30850	0.30	+1.1
3,222,568	+		PGA1_c30850	0.32	-1.9
3,222,574	-		PGA1_c30850	0.33	-0.7
3,222,576	-		PGA1_c30850	0.33	+0.8
3,222,576	-		PGA1_c30850	0.33	+0.5
3,222,581	+		PGA1_c30850	0.34	+2.7
3,222,581	-		PGA1_c30850	0.34	-3.2
3,222,604	-		PGA1_c30850	0.37	+2.3
3,222,609	-		PGA1_c30850	0.37	+0.4
3,222,609	-		PGA1_c30850	0.37	+1.1
3,222,612	+		PGA1_c30850	0.38	-1.3
3,222,612	+		PGA1_c30850	0.38	+0.5
3,222,612	+		PGA1_c30850	0.38	-1.3
3,222,612	+		PGA1_c30850	0.38	+1.7
3,222,612	+		PGA1_c30850	0.38	-1.7
3,222,612	+		PGA1_c30850	0.38	-1.9
3,222,612	+		PGA1_c30850	0.38	-2.8
3,222,612	+		PGA1_c30850	0.38	+0.5
3,222,612	+		PGA1_c30850	0.38	-0.3
3,222,612	+		PGA1_c30850	0.38	-2.0
3,222,620	-		PGA1_c30850	0.38	-2.3
3,222,620	-		PGA1_c30850	0.38	-0.9
3,222,620	-		PGA1_c30850	0.38	-0.2
3,222,620	-		PGA1_c30850	0.38	+1.0
3,222,620	-		PGA1_c30850	0.38	+0.2
3,222,620	-		PGA1_c30850	0.38	-0.5
3,222,620	-		PGA1_c30850	0.38	+0.1
3,222,640	+		PGA1_c30850	0.41	-1.3
3,222,675	-		PGA1_c30850	0.45	+0.0
3,222,678	+		PGA1_c30850	0.45	+2.8
3,222,689	-		PGA1_c30850	0.47	+1.1
3,222,689	-		PGA1_c30850	0.47	+0.7
3,222,690	-		PGA1_c30850	0.47	+0.2
3,222,705	-		PGA1_c30850	0.48	-0.3
3,222,726	+		PGA1_c30850	0.51	+0.7
3,222,734	+		PGA1_c30850	0.52	-2.5
3,222,734	+		PGA1_c30850	0.52	-1.5
3,222,741	+		PGA1_c30850	0.53	+0.8
3,222,827	+		PGA1_c30850	0.63	-1.0
3,222,842	-		PGA1_c30850	0.64	+1.2
3,222,927	-		PGA1_c30850	0.74	-1.7
3,222,927	-		PGA1_c30850	0.74	+2.2
3,222,937	+		PGA1_c30850	0.76	-0.5
3,222,937	+		PGA1_c30850	0.76	+1.2
3,222,937	+		PGA1_c30850	0.76	+1.9
3,222,941	+		PGA1_c30850	0.76	-0.1
3,222,941	+		PGA1_c30850	0.76	-1.5
3,222,941	+		PGA1_c30850	0.76	+0.4
3,222,941	+		PGA1_c30850	0.76	-0.9
3,222,941	+		PGA1_c30850	0.76	-1.0
3,222,945	-		PGA1_c30850	0.76	-0.9
3,222,945	-		PGA1_c30850	0.76	-0.3
3,222,945	-		PGA1_c30850	0.76	+0.1
3,222,949	+		PGA1_c30850	0.77	-0.9
3,222,949	+		PGA1_c30850	0.77	-0.5
3,222,949	+		PGA1_c30850	0.77	-0.4
3,222,957	-		PGA1_c30850	0.78	+0.1
3,222,957	-		PGA1_c30850	0.78	-1.0
3,222,957	-		PGA1_c30850	0.78	+0.4
3,222,957	-		PGA1_c30850	0.78	-0.5
3,222,957	-		PGA1_c30850	0.78	-0.8
3,222,957	-		PGA1_c30850	0.78	-0.3
3,222,977	+		PGA1_c30850	0.80	-0.8
3,222,977	+		PGA1_c30850	0.80	+1.0
3,222,977	+		PGA1_c30850	0.80	-1.2
3,222,978	+		PGA1_c30850	0.80	+0.4
3,222,984	+		PGA1_c30850	0.81	+0.4
3,222,984	+		PGA1_c30850	0.81	-0.3
3,222,984	+		PGA1_c30850	0.81	-0.9
3,222,984	+		PGA1_c30850	0.81	+1.2
3,222,984	+		PGA1_c30850	0.81	-1.0
3,222,984	+		PGA1_c30850	0.81	+1.3
3,222,984	+		PGA1_c30850	0.81	+0.5
3,222,984	+		PGA1_c30850	0.81	+1.3
3,222,984	+		PGA1_c30850	0.81	-3.3
3,222,985	-		PGA1_c30850	0.81	+0.5
3,222,989	+		PGA1_c30850	0.82	-1.1
3,222,989	+		PGA1_c30850	0.82	+1.0
3,222,991	+		PGA1_c30850	0.82	-0.5
3,222,992	-		PGA1_c30850	0.82	-0.0
3,222,992	-		PGA1_c30850	0.82	+1.0
3,222,992	-		PGA1_c30850	0.82	+0.4
3,222,992	-		PGA1_c30850	0.82	+0.9
3,222,992	-		PGA1_c30850	0.82	-0.8
3,222,992	-		PGA1_c30850	0.82	+0.8
3,222,992	-		PGA1_c30850	0.82	-1.1
3,222,992	-		PGA1_c30850	0.82	-2.4
3,222,992	-		PGA1_c30850	0.82	-0.7
3,222,992	-		PGA1_c30850	0.82	-0.5
3,222,992	-		PGA1_c30850	0.82	+1.8
3,222,994	+		PGA1_c30850	0.82	-0.5
3,222,997	-		PGA1_c30850	0.83	-0.0
3,223,002	-		PGA1_c30850	0.83	+0.2
3,223,023	+		PGA1_c30850	0.86	+1.0
3,223,062	-				+2.2
3,223,065	-				+1.9
3,223,067	-				+0.4
3,223,077	-				-2.3
3,223,087	+				+0.5
3,223,092	+				+0.1
3,223,109	+				-1.5
3,223,126	-				-1.2
3,223,128	+				+1.4
3,223,130	+				+0.3
3,223,130	+				+1.2
3,223,130	+				+0.0
3,223,130	+				-0.3
3,223,132	+				+0.6
3,223,136	-				-0.5
3,223,138	-				-0.8
3,223,138	-				-0.8
3,223,138	-				+1.1
3,223,138	-				+0.4
3,223,147	-				-1.0
3,223,147	-				-1.7
3,223,150	+				-2.7
3,223,158	-				+0.8
3,223,173	+				+0.5
3,223,173	+				+2.2
3,223,173	+				+0.4
3,223,173	+				-0.2
3,223,173	+				-0.2
3,223,177	-				-1.5
3,223,181	-				-1.5
3,223,181	-				-0.9
3,223,181	-				-3.3
3,223,181	-				+0.8
3,223,181	-				+0.5
3,223,194	+				+0.5
3,223,204	+				+0.2
3,223,207	+				+1.3
3,223,209	+				-1.5
3,223,209	+				+0.0
3,223,209	+				-2.9
3,223,209	+				+0.5
3,223,209	+				+2.8
3,223,212	-				-0.0
3,223,214	+				+0.3
3,223,214	+				+0.1
3,223,214	+				+0.8
3,223,214	+				+1.5
3,223,215	-				-0.8
3,223,215	-				+0.6
3,223,215	-				-2.5
3,223,216	-				+1.5
3,223,217	-				+0.7
3,223,217	-				-1.6
3,223,217	-				-0.4
3,223,217	-				-3.2
3,223,217	-				+0.7
3,223,217	-				-1.0
3,223,217	-				-0.2
3,223,217	-				+0.8
3,223,222	-				+0.7
3,223,222	-				-1.6
3,223,222	-				+2.3
3,223,222	-				-0.4
3,223,222	-				+0.5
3,223,223	-				-0.3
3,223,236	-				-1.5
3,223,267	+				+0.7
3,223,267	+				+0.4
3,223,267	+				-0.2
3,223,271	+				+0.3
3,223,271	+				-1.4
3,223,272	+				-1.3
3,223,272	+				+0.7
3,223,275	-				+2.1
3,223,275	-				+1.5
3,223,279	-				+2.1
3,223,279	-				-1.6
3,223,279	-				+1.0
3,223,280	-				+0.1
3,223,280	-				+0.8
3,223,292	+				-0.0
3,223,293	+				+1.1