Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03150

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03140 and PGA1_c03150 are separated by 132 nucleotidesPGA1_c03150 and PGA1_c03160 overlap by 4 nucleotides PGA1_c03140: PGA1_c03140 - putative tRNA threonylcarbamoyladenosine biosynthesis protein, at 302,517 to 303,464 _c03140 PGA1_c03150: PGA1_c03150 - putative acyl-CoA dehydrogenase, at 303,597 to 305,303 _c03150 PGA1_c03160: PGA1_c03160 - metallo-beta-lactamase-like protein, at 305,300 to 306,337 _c03160 Position (kb) 303 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 303.535 kb on - strandat 303.540 kb on - strandat 303.553 kb on - strandat 303.559 kb on + strandat 303.562 kb on - strandat 303.564 kb on + strandat 303.564 kb on + strandat 303.564 kb on + strandat 303.572 kb on - strandat 303.589 kb on + strandat 303.594 kb on + strandat 303.597 kb on - strandat 303.623 kb on + strandat 303.697 kb on + strandat 303.764 kb on - strandat 303.764 kb on - strandat 303.885 kb on - strand, within PGA1_c03150at 303.885 kb on - strand, within PGA1_c03150at 303.885 kb on - strand, within PGA1_c03150at 303.912 kb on + strand, within PGA1_c03150at 303.913 kb on - strand, within PGA1_c03150at 303.957 kb on - strand, within PGA1_c03150at 303.972 kb on + strand, within PGA1_c03150at 303.986 kb on + strand, within PGA1_c03150at 304.008 kb on + strand, within PGA1_c03150at 304.083 kb on - strand, within PGA1_c03150at 304.097 kb on + strand, within PGA1_c03150at 304.110 kb on - strand, within PGA1_c03150at 304.123 kb on + strand, within PGA1_c03150at 304.147 kb on + strand, within PGA1_c03150at 304.175 kb on + strand, within PGA1_c03150at 304.175 kb on + strand, within PGA1_c03150at 304.186 kb on + strand, within PGA1_c03150at 304.192 kb on - strand, within PGA1_c03150at 304.192 kb on - strand, within PGA1_c03150at 304.217 kb on - strand, within PGA1_c03150at 304.227 kb on - strand, within PGA1_c03150at 304.235 kb on - strand, within PGA1_c03150at 304.296 kb on - strand, within PGA1_c03150at 304.341 kb on - strand, within PGA1_c03150at 304.348 kb on + strand, within PGA1_c03150at 304.356 kb on - strand, within PGA1_c03150at 304.358 kb on + strand, within PGA1_c03150at 304.373 kb on - strand, within PGA1_c03150at 304.373 kb on - strand, within PGA1_c03150at 304.441 kb on - strand, within PGA1_c03150at 304.449 kb on - strand, within PGA1_c03150at 304.485 kb on - strand, within PGA1_c03150at 304.526 kb on - strand, within PGA1_c03150at 304.526 kb on - strand, within PGA1_c03150at 304.530 kb on + strand, within PGA1_c03150at 304.540 kb on + strand, within PGA1_c03150at 304.613 kb on + strand, within PGA1_c03150at 304.613 kb on + strand, within PGA1_c03150at 304.627 kb on - strand, within PGA1_c03150at 304.653 kb on + strand, within PGA1_c03150at 304.661 kb on - strand, within PGA1_c03150at 304.703 kb on + strand, within PGA1_c03150at 304.703 kb on + strand, within PGA1_c03150at 304.708 kb on + strand, within PGA1_c03150at 304.754 kb on - strand, within PGA1_c03150at 304.786 kb on + strand, within PGA1_c03150at 304.794 kb on - strand, within PGA1_c03150at 304.838 kb on + strand, within PGA1_c03150at 304.851 kb on - strand, within PGA1_c03150at 304.885 kb on + strand, within PGA1_c03150at 304.899 kb on + strand, within PGA1_c03150at 304.992 kb on + strand, within PGA1_c03150at 304.995 kb on - strand, within PGA1_c03150at 305.255 kb on - strandat 305.284 kb on - strandat 305.284 kb on - strandat 305.347 kb on + strandat 305.422 kb on + strand, within PGA1_c03160at 305.422 kb on + strand, within PGA1_c03160at 305.430 kb on - strand, within PGA1_c03160at 305.430 kb on - strand, within PGA1_c03160at 305.430 kb on - strand, within PGA1_c03160at 305.464 kb on - strand, within PGA1_c03160at 305.466 kb on - strand, within PGA1_c03160at 305.472 kb on - strand, within PGA1_c03160at 305.480 kb on + strand, within PGA1_c03160at 305.512 kb on + strand, within PGA1_c03160at 305.618 kb on - strand, within PGA1_c03160at 305.625 kb on - strand, within PGA1_c03160at 305.636 kb on + strand, within PGA1_c03160at 305.642 kb on - strand, within PGA1_c03160at 305.644 kb on - strand, within PGA1_c03160at 305.677 kb on + strand, within PGA1_c03160at 305.792 kb on - strand, within PGA1_c03160at 305.851 kb on + strand, within PGA1_c03160at 305.877 kb on + strand, within PGA1_c03160at 305.891 kb on + strand, within PGA1_c03160at 305.923 kb on - strand, within PGA1_c03160at 306.014 kb on - strand, within PGA1_c03160at 306.037 kb on + strand, within PGA1_c03160at 306.047 kb on + strand, within PGA1_c03160at 306.073 kb on - strand, within PGA1_c03160at 306.099 kb on + strand, within PGA1_c03160at 306.163 kb on + strand, within PGA1_c03160at 306.233 kb on + strand, within PGA1_c03160at 306.238 kb on + strandat 306.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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303,535 - +1.3
303,540 - +2.8
303,553 - +1.3
303,559 + -1.3
303,562 - -1.5
303,564 + -0.2
303,564 + -2.0
303,564 + +1.0
303,572 - +0.6
303,589 + +1.1
303,594 + -1.6
303,597 - -1.0
303,623 + -0.0
303,697 + +1.1
303,764 - +1.3
303,764 - +0.4
303,885 - PGA1_c03150 0.17 +0.8
303,885 - PGA1_c03150 0.17 +2.4
303,885 - PGA1_c03150 0.17 +0.7
303,912 + PGA1_c03150 0.18 +0.3
303,913 - PGA1_c03150 0.19 -2.6
303,957 - PGA1_c03150 0.21 +0.0
303,972 + PGA1_c03150 0.22 +2.5
303,986 + PGA1_c03150 0.23 +1.7
304,008 + PGA1_c03150 0.24 -1.4
304,083 - PGA1_c03150 0.28 +0.5
304,097 + PGA1_c03150 0.29 +0.1
304,110 - PGA1_c03150 0.30 -1.7
304,123 + PGA1_c03150 0.31 +1.6
304,147 + PGA1_c03150 0.32 +0.3
304,175 + PGA1_c03150 0.34 -0.5
304,175 + PGA1_c03150 0.34 -0.5
304,186 + PGA1_c03150 0.35 +2.3
304,192 - PGA1_c03150 0.35 -0.3
304,192 - PGA1_c03150 0.35 +2.1
304,217 - PGA1_c03150 0.36 -0.3
304,227 - PGA1_c03150 0.37 +0.5
304,235 - PGA1_c03150 0.37 +0.1
304,296 - PGA1_c03150 0.41 +1.4
304,341 - PGA1_c03150 0.44 +2.9
304,348 + PGA1_c03150 0.44 -2.9
304,356 - PGA1_c03150 0.44 +1.0
304,358 + PGA1_c03150 0.45 -0.4
304,373 - PGA1_c03150 0.45 +2.0
304,373 - PGA1_c03150 0.45 -1.6
304,441 - PGA1_c03150 0.49 -0.2
304,449 - PGA1_c03150 0.50 -1.9
304,485 - PGA1_c03150 0.52 -2.2
304,526 - PGA1_c03150 0.54 +1.9
304,526 - PGA1_c03150 0.54 +2.1
304,530 + PGA1_c03150 0.55 -1.3
304,540 + PGA1_c03150 0.55 -2.2
304,613 + PGA1_c03150 0.60 -0.5
304,613 + PGA1_c03150 0.60 +1.8
304,627 - PGA1_c03150 0.60 +1.4
304,653 + PGA1_c03150 0.62 -2.4
304,661 - PGA1_c03150 0.62 -1.9
304,703 + PGA1_c03150 0.65 +2.7
304,703 + PGA1_c03150 0.65 +0.0
304,708 + PGA1_c03150 0.65 +1.8
304,754 - PGA1_c03150 0.68 +1.5
304,786 + PGA1_c03150 0.70 -2.3
304,794 - PGA1_c03150 0.70 +2.1
304,838 + PGA1_c03150 0.73 -0.4
304,851 - PGA1_c03150 0.73 -1.9
304,885 + PGA1_c03150 0.75 +1.5
304,899 + PGA1_c03150 0.76 -0.6
304,992 + PGA1_c03150 0.82 -1.7
304,995 - PGA1_c03150 0.82 +0.8
305,255 - -0.8
305,284 - +1.4
305,284 - +0.3
305,347 + +1.4
305,422 + PGA1_c03160 0.12 +0.1
305,422 + PGA1_c03160 0.12 +1.5
305,430 - PGA1_c03160 0.13 -0.7
305,430 - PGA1_c03160 0.13 +0.2
305,430 - PGA1_c03160 0.13 +0.2
305,464 - PGA1_c03160 0.16 -0.9
305,466 - PGA1_c03160 0.16 +1.8
305,472 - PGA1_c03160 0.17 -1.8
305,480 + PGA1_c03160 0.17 -1.3
305,512 + PGA1_c03160 0.20 +1.0
305,618 - PGA1_c03160 0.31 +1.1
305,625 - PGA1_c03160 0.31 -2.3
305,636 + PGA1_c03160 0.32 -0.6
305,642 - PGA1_c03160 0.33 -0.4
305,644 - PGA1_c03160 0.33 +1.8
305,677 + PGA1_c03160 0.36 +1.9
305,792 - PGA1_c03160 0.47 +1.2
305,851 + PGA1_c03160 0.53 +0.5
305,877 + PGA1_c03160 0.56 +1.8
305,891 + PGA1_c03160 0.57 +0.9
305,923 - PGA1_c03160 0.60 +0.8
306,014 - PGA1_c03160 0.69 -0.2
306,037 + PGA1_c03160 0.71 -2.0
306,047 + PGA1_c03160 0.72 +0.7
306,073 - PGA1_c03160 0.74 -0.3
306,099 + PGA1_c03160 0.77 +0.3
306,163 + PGA1_c03160 0.83 +0.3
306,233 + PGA1_c03160 0.90 +2.8
306,238 + +1.4
306,285 - +1.2

Or see this region's nucleotide sequence