Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c28940 and PGA1_c28950 overlap by 27 nucleotides PGA1_c28950 and PGA1_c28960 overlap by 4 nucleotides PGA1_c28960 and PGA1_c28970 are separated by 58 nucleotides
PGA1_c28940: PGA1_c28940 - transglycosylase SLT domain-containing protein, at 3,035,525 to 3,037,483
_c28940
PGA1_c28950: PGA1_c28950 - putative integral membrane protein, at 3,037,457 to 3,038,374
_c28950
PGA1_c28960: PGA1_c28960 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC-like protein, at 3,038,371 to 3,039,069
_c28960
PGA1_c28970: PGA1_c28970 - putative FAD dependent oxidoreductase, at 3,039,128 to 3,040,195
_c28970
Position (kb)
3037
3038
3039 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3036.457 kb on - strand, within PGA1_c28940 at 3036.461 kb on - strand, within PGA1_c28940 at 3036.470 kb on + strand, within PGA1_c28940 at 3036.476 kb on - strand, within PGA1_c28940 at 3036.563 kb on + strand, within PGA1_c28940 at 3036.563 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.568 kb on + strand, within PGA1_c28940 at 3036.571 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.576 kb on - strand, within PGA1_c28940 at 3036.673 kb on - strand, within PGA1_c28940 at 3036.673 kb on - strand, within PGA1_c28940 at 3036.673 kb on - strand, within PGA1_c28940 at 3036.930 kb on - strand, within PGA1_c28940 at 3036.979 kb on - strand, within PGA1_c28940 at 3037.002 kb on + strand, within PGA1_c28940 at 3037.164 kb on + strand, within PGA1_c28940 at 3037.172 kb on - strand, within PGA1_c28940 at 3037.175 kb on + strand, within PGA1_c28940 at 3037.183 kb on - strand, within PGA1_c28940 at 3037.186 kb on + strand, within PGA1_c28940 at 3037.273 kb on + strand, within PGA1_c28940 at 3037.273 kb on + strand, within PGA1_c28940 at 3037.281 kb on - strand, within PGA1_c28940 at 3037.300 kb on + strand at 3037.349 kb on + strand at 3037.352 kb on - strand at 3037.463 kb on - strand at 3037.469 kb on - strand at 3037.483 kb on + strand at 3037.500 kb on - strand at 3037.583 kb on - strand, within PGA1_c28950 at 3037.585 kb on + strand, within PGA1_c28950 at 3037.601 kb on + strand, within PGA1_c28950 at 3037.601 kb on + strand, within PGA1_c28950 at 3037.609 kb on - strand, within PGA1_c28950 at 3037.609 kb on - strand, within PGA1_c28950 at 3037.614 kb on - strand, within PGA1_c28950 at 3037.619 kb on - strand, within PGA1_c28950 at 3037.624 kb on - strand, within PGA1_c28950 at 3037.658 kb on + strand, within PGA1_c28950 at 3037.721 kb on + strand, within PGA1_c28950 at 3037.775 kb on - strand, within PGA1_c28950 at 3037.838 kb on + strand, within PGA1_c28950 at 3037.838 kb on + strand, within PGA1_c28950 at 3037.846 kb on - strand, within PGA1_c28950 at 3037.969 kb on + strand, within PGA1_c28950 at 3037.979 kb on + strand, within PGA1_c28950 at 3037.987 kb on - strand, within PGA1_c28950 at 3037.989 kb on + strand, within PGA1_c28950 at 3038.034 kb on + strand, within PGA1_c28950 at 3038.166 kb on - strand, within PGA1_c28950 at 3038.177 kb on - strand, within PGA1_c28950 at 3038.209 kb on + strand, within PGA1_c28950 at 3038.209 kb on + strand, within PGA1_c28950 at 3038.209 kb on + strand, within PGA1_c28950 at 3038.209 kb on + strand, within PGA1_c28950 at 3038.215 kb on - strand, within PGA1_c28950 at 3038.217 kb on + strand, within PGA1_c28950 at 3038.217 kb on - strand, within PGA1_c28950 at 3038.217 kb on - strand, within PGA1_c28950 at 3038.217 kb on - strand, within PGA1_c28950 at 3038.217 kb on - strand, within PGA1_c28950 at 3038.225 kb on - strand, within PGA1_c28950 at 3038.225 kb on - strand, within PGA1_c28950 at 3038.225 kb on - strand, within PGA1_c28950 at 3038.255 kb on - strand, within PGA1_c28950 at 3038.285 kb on + strand at 3038.293 kb on - strand at 3038.357 kb on - strand at 3038.453 kb on - strand, within PGA1_c28960 at 3038.514 kb on - strand, within PGA1_c28960 at 3038.565 kb on + strand, within PGA1_c28960 at 3038.573 kb on - strand, within PGA1_c28960 at 3038.673 kb on + strand, within PGA1_c28960 at 3038.673 kb on + strand, within PGA1_c28960 at 3038.673 kb on + strand, within PGA1_c28960 at 3038.673 kb on + strand, within PGA1_c28960 at 3038.681 kb on - strand, within PGA1_c28960 at 3038.681 kb on - strand, within PGA1_c28960 at 3038.681 kb on - strand, within PGA1_c28960 at 3038.683 kb on + strand, within PGA1_c28960 at 3038.683 kb on + strand, within PGA1_c28960 at 3038.691 kb on - strand, within PGA1_c28960 at 3038.731 kb on + strand, within PGA1_c28960 at 3038.783 kb on - strand, within PGA1_c28960 at 3038.791 kb on + strand, within PGA1_c28960 at 3038.865 kb on - strand, within PGA1_c28960 at 3038.865 kb on - strand, within PGA1_c28960 at 3038.900 kb on + strand, within PGA1_c28960 at 3038.966 kb on + strand, within PGA1_c28960 at 3038.966 kb on + strand, within PGA1_c28960 at 3039.051 kb on - strand at 3039.080 kb on + strand at 3039.093 kb on + strand at 3039.101 kb on - strand at 3039.109 kb on - strand at 3039.109 kb on - strand at 3039.111 kb on + strand at 3039.158 kb on + strand at 3039.182 kb on + strand at 3039.189 kb on + strand at 3039.189 kb on - strand at 3039.190 kb on - strand at 3039.190 kb on - strand at 3039.190 kb on - strand at 3039.190 kb on - strand at 3039.190 kb on - strand at 3039.294 kb on + strand, within PGA1_c28970
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,036,457 - PGA1_c28940 0.48 +2.2 3,036,461 - PGA1_c28940 0.48 -3.2 3,036,470 + PGA1_c28940 0.48 -3.0 3,036,476 - PGA1_c28940 0.49 -2.5 3,036,563 + PGA1_c28940 0.53 +0.4 3,036,563 + PGA1_c28940 0.53 -1.0 3,036,568 + PGA1_c28940 0.53 -1.5 3,036,568 + PGA1_c28940 0.53 +1.1 3,036,568 + PGA1_c28940 0.53 -1.2 3,036,568 + PGA1_c28940 0.53 -1.2 3,036,568 + PGA1_c28940 0.53 -1.8 3,036,568 + PGA1_c28940 0.53 -1.1 3,036,568 + PGA1_c28940 0.53 -1.5 3,036,568 + PGA1_c28940 0.53 -0.2 3,036,568 + PGA1_c28940 0.53 -1.8 3,036,568 + -1.2 3,036,568 + PGA1_c28940 0.53 -1.8 3,036,568 + PGA1_c28940 0.53 -1.2 3,036,568 + PGA1_c28940 0.53 -2.1 3,036,568 + PGA1_c28940 0.53 +1.4 3,036,568 + PGA1_c28940 0.53 +0.4 3,036,568 + PGA1_c28940 0.53 -1.0 3,036,568 + PGA1_c28940 0.53 -1.5 3,036,568 + PGA1_c28940 0.53 -2.2 3,036,568 + PGA1_c28940 0.53 -0.2 3,036,568 + PGA1_c28940 0.53 -2.6 3,036,568 + PGA1_c28940 0.53 -1.5 3,036,568 + PGA1_c28940 0.53 -1.5 3,036,568 + PGA1_c28940 0.53 +0.4 3,036,568 + PGA1_c28940 0.53 -1.6 3,036,568 + PGA1_c28940 0.53 -2.3 3,036,568 + PGA1_c28940 0.53 -1.5 3,036,568 + PGA1_c28940 0.53 -0.6 3,036,568 + PGA1_c28940 0.53 +0.4 3,036,568 + PGA1_c28940 0.53 -2.6 3,036,571 - PGA1_c28940 0.53 +0.4 3,036,576 - PGA1_c28940 0.54 +1.4 3,036,576 - PGA1_c28940 0.54 -2.2 3,036,576 - PGA1_c28940 0.54 -1.5 3,036,576 - PGA1_c28940 0.54 -3.1 3,036,576 - PGA1_c28940 0.54 -1.0 3,036,576 - PGA1_c28940 0.54 -2.5 3,036,576 - PGA1_c28940 0.54 -2.3 3,036,576 - PGA1_c28940 0.54 +1.1 3,036,576 - PGA1_c28940 0.54 -2.8 3,036,576 - PGA1_c28940 0.54 +1.4 3,036,576 - PGA1_c28940 0.54 -1.0 3,036,576 - PGA1_c28940 0.54 -2.9 3,036,576 - PGA1_c28940 0.54 -2.1 3,036,576 - PGA1_c28940 0.54 -1.5 3,036,576 - -1.0 3,036,576 - PGA1_c28940 0.54 +1.4 3,036,576 - PGA1_c28940 0.54 -2.0 3,036,576 - PGA1_c28940 0.54 -0.6 3,036,576 - PGA1_c28940 0.54 -0.2 3,036,576 - PGA1_c28940 0.54 -1.5 3,036,576 - PGA1_c28940 0.54 +1.0 3,036,576 - PGA1_c28940 0.54 +1.4 3,036,576 - PGA1_c28940 0.54 +1.4 3,036,576 - PGA1_c28940 0.54 -0.2 3,036,576 - PGA1_c28940 0.54 -1.8 3,036,673 - PGA1_c28940 0.59 -1.8 3,036,673 - PGA1_c28940 0.59 -1.2 3,036,673 - PGA1_c28940 0.59 +0.4 3,036,930 - PGA1_c28940 0.72 -2.7 3,036,979 - PGA1_c28940 0.74 -0.2 3,037,002 + PGA1_c28940 0.75 +1.9 3,037,164 + PGA1_c28940 0.84 -1.3 3,037,172 - PGA1_c28940 0.84 -1.5 3,037,175 + PGA1_c28940 0.84 -0.6 3,037,183 - PGA1_c28940 0.85 -1.5 3,037,186 + PGA1_c28940 0.85 -2.1 3,037,273 + PGA1_c28940 0.89 -1.6 3,037,273 + PGA1_c28940 0.89 -1.2 3,037,281 - PGA1_c28940 0.90 -1.0 3,037,300 + -0.6 3,037,349 + -0.2 3,037,352 - -1.2 3,037,463 - -0.2 3,037,469 - -0.2 3,037,483 + -1.5 3,037,500 - -1.2 3,037,583 - PGA1_c28950 0.14 -1.2 3,037,585 + PGA1_c28950 0.14 +1.5 3,037,601 + PGA1_c28950 0.16 +0.9 3,037,601 + PGA1_c28950 0.16 +1.1 3,037,609 - PGA1_c28950 0.17 +0.4 3,037,609 - PGA1_c28950 0.17 +2.4 3,037,614 - PGA1_c28950 0.17 -1.0 3,037,619 - PGA1_c28950 0.18 +1.4 3,037,624 - PGA1_c28950 0.18 -0.2 3,037,658 + PGA1_c28950 0.22 +0.6 3,037,721 + PGA1_c28950 0.29 +0.4 3,037,775 - PGA1_c28950 0.35 -0.1 3,037,838 + PGA1_c28950 0.42 -0.2 3,037,838 + PGA1_c28950 0.42 +0.4 3,037,846 - PGA1_c28950 0.42 +1.9 3,037,969 + PGA1_c28950 0.56 +1.4 3,037,979 + PGA1_c28950 0.57 +1.0 3,037,987 - PGA1_c28950 0.58 -1.8 3,037,989 + PGA1_c28950 0.58 +1.4 3,038,034 + PGA1_c28950 0.63 +1.4 3,038,166 - PGA1_c28950 0.77 +2.3 3,038,177 - PGA1_c28950 0.78 +1.8 3,038,209 + PGA1_c28950 0.82 +5.1 3,038,209 + PGA1_c28950 0.82 -3.0 3,038,209 + PGA1_c28950 0.82 +0.5 3,038,209 + PGA1_c28950 0.82 +1.4 3,038,215 - PGA1_c28950 0.83 -2.1 3,038,217 + PGA1_c28950 0.83 -0.2 3,038,217 - PGA1_c28950 0.83 -3.0 3,038,217 - PGA1_c28950 0.83 +0.4 3,038,217 - PGA1_c28950 0.83 -0.2 3,038,217 - PGA1_c28950 0.83 -0.5 3,038,225 - PGA1_c28950 0.84 +1.7 3,038,225 - PGA1_c28950 0.84 +2.1 3,038,225 - PGA1_c28950 0.84 +1.7 3,038,255 - PGA1_c28950 0.87 +0.9 3,038,285 + +1.4 3,038,293 - -1.0 3,038,357 - -0.8 3,038,453 - PGA1_c28960 0.12 +0.8 3,038,514 - PGA1_c28960 0.20 -1.5 3,038,565 + PGA1_c28960 0.28 -1.0 3,038,573 - PGA1_c28960 0.29 +2.2 3,038,673 + PGA1_c28960 0.43 +1.4 3,038,673 + PGA1_c28960 0.43 -1.2 3,038,673 + PGA1_c28960 0.43 -1.5 3,038,673 + PGA1_c28960 0.43 -1.2 3,038,681 - PGA1_c28960 0.44 -1.8 3,038,681 - PGA1_c28960 0.44 +1.6 3,038,681 - PGA1_c28960 0.44 -0.8 3,038,683 + PGA1_c28960 0.45 +0.4 3,038,683 + PGA1_c28960 0.45 +0.5 3,038,691 - PGA1_c28960 0.46 +0.4 3,038,731 + PGA1_c28960 0.52 +1.9 3,038,783 - PGA1_c28960 0.59 +0.4 3,038,791 + PGA1_c28960 0.60 -0.2 3,038,865 - PGA1_c28960 0.71 -0.2 3,038,865 - PGA1_c28960 0.71 -2.3 3,038,900 + PGA1_c28960 0.76 +2.2 3,038,966 + PGA1_c28960 0.85 +1.4 3,038,966 + PGA1_c28960 0.85 +1.1 3,039,051 - +0.8 3,039,080 + -1.0 3,039,093 + +1.0 3,039,101 - +1.4 3,039,109 - +1.4 3,039,109 - -1.0 3,039,111 + +1.4 3,039,158 + +0.7 3,039,182 + +0.9 3,039,189 + -0.6 3,039,189 - +0.6 3,039,190 - +0.1 3,039,190 - +3.2 3,039,190 - +2.6 3,039,190 - +0.8 3,039,190 - +1.5 3,039,294 + PGA1_c28970 0.16 +1.0
Or see this region's nucleotide sequence