Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28950

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,036,457	-		PGA1_c28940	0.48	+2.2
3,036,461	-		PGA1_c28940	0.48	-3.2
3,036,470	+		PGA1_c28940	0.48	-3.0
3,036,476	-		PGA1_c28940	0.49	-2.5
3,036,563	+		PGA1_c28940	0.53	+0.4
3,036,563	+		PGA1_c28940	0.53	-1.0
3,036,568	+		PGA1_c28940	0.53	-1.5
3,036,568	+		PGA1_c28940	0.53	+1.1
3,036,568	+		PGA1_c28940	0.53	-1.2
3,036,568	+		PGA1_c28940	0.53	-1.2
3,036,568	+		PGA1_c28940	0.53	-1.8
3,036,568	+		PGA1_c28940	0.53	-1.1
3,036,568	+		PGA1_c28940	0.53	-1.5
3,036,568	+		PGA1_c28940	0.53	-0.2
3,036,568	+		PGA1_c28940	0.53	-1.8
3,036,568	+				-1.2
3,036,568	+		PGA1_c28940	0.53	-1.8
3,036,568	+		PGA1_c28940	0.53	-1.2
3,036,568	+		PGA1_c28940	0.53	-2.1
3,036,568	+		PGA1_c28940	0.53	+1.4
3,036,568	+		PGA1_c28940	0.53	+0.4
3,036,568	+		PGA1_c28940	0.53	-1.0
3,036,568	+		PGA1_c28940	0.53	-1.5
3,036,568	+		PGA1_c28940	0.53	-2.2
3,036,568	+		PGA1_c28940	0.53	-0.2
3,036,568	+		PGA1_c28940	0.53	-2.6
3,036,568	+		PGA1_c28940	0.53	-1.5
3,036,568	+		PGA1_c28940	0.53	-1.5
3,036,568	+		PGA1_c28940	0.53	+0.4
3,036,568	+		PGA1_c28940	0.53	-1.6
3,036,568	+		PGA1_c28940	0.53	-2.3
3,036,568	+		PGA1_c28940	0.53	-1.5
3,036,568	+		PGA1_c28940	0.53	-0.6
3,036,568	+		PGA1_c28940	0.53	+0.4
3,036,568	+		PGA1_c28940	0.53	-2.6
3,036,571	-		PGA1_c28940	0.53	+0.4
3,036,576	-		PGA1_c28940	0.54	+1.4
3,036,576	-		PGA1_c28940	0.54	-2.2
3,036,576	-		PGA1_c28940	0.54	-1.5
3,036,576	-		PGA1_c28940	0.54	-3.1
3,036,576	-		PGA1_c28940	0.54	-1.0
3,036,576	-		PGA1_c28940	0.54	-2.5
3,036,576	-		PGA1_c28940	0.54	-2.3
3,036,576	-		PGA1_c28940	0.54	+1.1
3,036,576	-		PGA1_c28940	0.54	-2.8
3,036,576	-		PGA1_c28940	0.54	+1.4
3,036,576	-		PGA1_c28940	0.54	-1.0
3,036,576	-		PGA1_c28940	0.54	-2.9
3,036,576	-		PGA1_c28940	0.54	-2.1
3,036,576	-		PGA1_c28940	0.54	-1.5
3,036,576	-				-1.0
3,036,576	-		PGA1_c28940	0.54	+1.4
3,036,576	-		PGA1_c28940	0.54	-2.0
3,036,576	-		PGA1_c28940	0.54	-0.6
3,036,576	-		PGA1_c28940	0.54	-0.2
3,036,576	-		PGA1_c28940	0.54	-1.5
3,036,576	-		PGA1_c28940	0.54	+1.0
3,036,576	-		PGA1_c28940	0.54	+1.4
3,036,576	-		PGA1_c28940	0.54	+1.4
3,036,576	-		PGA1_c28940	0.54	-0.2
3,036,576	-		PGA1_c28940	0.54	-1.8
3,036,673	-		PGA1_c28940	0.59	-1.8
3,036,673	-		PGA1_c28940	0.59	-1.2
3,036,673	-		PGA1_c28940	0.59	+0.4
3,036,930	-		PGA1_c28940	0.72	-2.7
3,036,979	-		PGA1_c28940	0.74	-0.2
3,037,002	+		PGA1_c28940	0.75	+1.9
3,037,164	+		PGA1_c28940	0.84	-1.3
3,037,172	-		PGA1_c28940	0.84	-1.5
3,037,175	+		PGA1_c28940	0.84	-0.6
3,037,183	-		PGA1_c28940	0.85	-1.5
3,037,186	+		PGA1_c28940	0.85	-2.1
3,037,273	+		PGA1_c28940	0.89	-1.6
3,037,273	+		PGA1_c28940	0.89	-1.2
3,037,281	-		PGA1_c28940	0.90	-1.0
3,037,300	+				-0.6
3,037,349	+				-0.2
3,037,352	-				-1.2
3,037,463	-				-0.2
3,037,469	-				-0.2
3,037,483	+				-1.5
3,037,500	-				-1.2
3,037,583	-		PGA1_c28950	0.14	-1.2
3,037,585	+		PGA1_c28950	0.14	+1.5
3,037,601	+		PGA1_c28950	0.16	+0.9
3,037,601	+		PGA1_c28950	0.16	+1.1
3,037,609	-		PGA1_c28950	0.17	+0.4
3,037,609	-		PGA1_c28950	0.17	+2.4
3,037,614	-		PGA1_c28950	0.17	-1.0
3,037,619	-		PGA1_c28950	0.18	+1.4
3,037,624	-		PGA1_c28950	0.18	-0.2
3,037,658	+		PGA1_c28950	0.22	+0.6
3,037,721	+		PGA1_c28950	0.29	+0.4
3,037,775	-		PGA1_c28950	0.35	-0.1
3,037,838	+		PGA1_c28950	0.42	-0.2
3,037,838	+		PGA1_c28950	0.42	+0.4
3,037,846	-		PGA1_c28950	0.42	+1.9
3,037,969	+		PGA1_c28950	0.56	+1.4
3,037,979	+		PGA1_c28950	0.57	+1.0
3,037,987	-		PGA1_c28950	0.58	-1.8
3,037,989	+		PGA1_c28950	0.58	+1.4
3,038,034	+		PGA1_c28950	0.63	+1.4
3,038,166	-		PGA1_c28950	0.77	+2.3
3,038,177	-		PGA1_c28950	0.78	+1.8
3,038,209	+		PGA1_c28950	0.82	+5.1
3,038,209	+		PGA1_c28950	0.82	-3.0
3,038,209	+		PGA1_c28950	0.82	+0.5
3,038,209	+		PGA1_c28950	0.82	+1.4
3,038,215	-		PGA1_c28950	0.83	-2.1
3,038,217	+		PGA1_c28950	0.83	-0.2
3,038,217	-		PGA1_c28950	0.83	-3.0
3,038,217	-		PGA1_c28950	0.83	+0.4
3,038,217	-		PGA1_c28950	0.83	-0.2
3,038,217	-		PGA1_c28950	0.83	-0.5
3,038,225	-		PGA1_c28950	0.84	+1.7
3,038,225	-		PGA1_c28950	0.84	+2.1
3,038,225	-		PGA1_c28950	0.84	+1.7
3,038,255	-		PGA1_c28950	0.87	+0.9
3,038,285	+				+1.4
3,038,293	-				-1.0
3,038,357	-				-0.8
3,038,453	-		PGA1_c28960	0.12	+0.8
3,038,514	-		PGA1_c28960	0.20	-1.5
3,038,565	+		PGA1_c28960	0.28	-1.0
3,038,573	-		PGA1_c28960	0.29	+2.2
3,038,673	+		PGA1_c28960	0.43	+1.4
3,038,673	+		PGA1_c28960	0.43	-1.2
3,038,673	+		PGA1_c28960	0.43	-1.5
3,038,673	+		PGA1_c28960	0.43	-1.2
3,038,681	-		PGA1_c28960	0.44	-1.8
3,038,681	-		PGA1_c28960	0.44	+1.6
3,038,681	-		PGA1_c28960	0.44	-0.8
3,038,683	+		PGA1_c28960	0.45	+0.4
3,038,683	+		PGA1_c28960	0.45	+0.5
3,038,691	-		PGA1_c28960	0.46	+0.4
3,038,731	+		PGA1_c28960	0.52	+1.9
3,038,783	-		PGA1_c28960	0.59	+0.4
3,038,791	+		PGA1_c28960	0.60	-0.2
3,038,865	-		PGA1_c28960	0.71	-0.2
3,038,865	-		PGA1_c28960	0.71	-2.3
3,038,900	+		PGA1_c28960	0.76	+2.2
3,038,966	+		PGA1_c28960	0.85	+1.4
3,038,966	+		PGA1_c28960	0.85	+1.1
3,039,051	-				+0.8
3,039,080	+				-1.0
3,039,093	+				+1.0
3,039,101	-				+1.4
3,039,109	-				+1.4
3,039,109	-				-1.0
3,039,111	+				+1.4
3,039,158	+				+0.7
3,039,182	+				+0.9
3,039,189	+				-0.6
3,039,189	-				+0.6
3,039,190	-				+0.1
3,039,190	-				+3.2
3,039,190	-				+2.6
3,039,190	-				+0.8
3,039,190	-				+1.5
3,039,294	+		PGA1_c28970	0.16	+1.0