Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25860

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,694,577	-		PGA1_c25840	0.27	-2.2
2,694,577	-		PGA1_c25840	0.27	-1.0
2,694,577	-		PGA1_c25840	0.27	-2.5
2,694,577	-		PGA1_c25840	0.27	-0.2
2,694,577	-		PGA1_c25840	0.27	+0.7
2,694,577	-		PGA1_c25840	0.27	+0.2
2,694,577	-		PGA1_c25840	0.27	+2.2
2,694,579	+		PGA1_c25840	0.28	+0.7
2,694,621	-		PGA1_c25840	0.31	+0.2
2,694,624	+		PGA1_c25840	0.32	-1.6
2,694,624	+		PGA1_c25840	0.32	+1.8
2,694,632	-		PGA1_c25840	0.32	-1.6
2,694,683	+		PGA1_c25840	0.37	-0.3
2,694,683	+		PGA1_c25840	0.37	+2.2
2,694,691	-		PGA1_c25840	0.38	-0.4
2,694,691	-		PGA1_c25840	0.38	-1.1
2,694,693	+		PGA1_c25840	0.38	-0.7
2,694,693	+		PGA1_c25840	0.38	-1.8
2,694,693	+		PGA1_c25840	0.38	+0.1
2,694,713	+		PGA1_c25840	0.40	-0.2
2,694,718	+		PGA1_c25840	0.40	-2.3
2,694,723	+		PGA1_c25840	0.41	-1.6
2,694,723	+		PGA1_c25840	0.41	+3.6
2,694,723	+		PGA1_c25840	0.41	-1.9
2,694,723	+		PGA1_c25840	0.41	-0.6
2,694,723	+		PGA1_c25840	0.41	+1.0
2,694,731	-		PGA1_c25840	0.41	-1.3
2,694,731	-		PGA1_c25840	0.41	-1.3
2,694,771	-		PGA1_c25840	0.45	+1.1
2,694,788	+		PGA1_c25840	0.46	-2.1
2,694,788	+		PGA1_c25840	0.46	+0.4
2,694,818	+		PGA1_c25840	0.49	+0.4
2,694,852	-		PGA1_c25840	0.52	+0.2
2,694,852	-		PGA1_c25840	0.52	-2.8
2,694,866	+		PGA1_c25840	0.53	+1.4
2,694,874	-		PGA1_c25840	0.54	-0.6
2,694,892	+		PGA1_c25840	0.56	-0.3
2,694,903	+		PGA1_c25840	0.57	+0.2
2,694,910	-		PGA1_c25840	0.57	-1.4
2,694,912	-		PGA1_c25840	0.58	-0.1
2,694,912	-		PGA1_c25840	0.58	+1.0
2,694,926	+		PGA1_c25840	0.59	-2.7
2,694,926	+		PGA1_c25840	0.59	+1.7
2,694,934	-		PGA1_c25840	0.59	+0.1
2,695,040	-		PGA1_c25840	0.69	+0.7
2,695,040	-		PGA1_c25840	0.69	-1.5
2,695,056	+		PGA1_c25840	0.70	-0.4
2,695,056	+		PGA1_c25840	0.70	-2.2
2,695,056	+		PGA1_c25840	0.70	-1.9
2,695,064	-		PGA1_c25840	0.71	-2.5
2,695,064	-		PGA1_c25840	0.71	-0.3
2,695,073	+		PGA1_c25840	0.72	+0.0
2,695,105	-		PGA1_c25840	0.75	-0.3
2,695,130	-		PGA1_c25840	0.77	+1.6
2,695,138	-		PGA1_c25840	0.78	+0.0
2,695,162	+		PGA1_c25840	0.80	+0.8
2,695,167	+		PGA1_c25840	0.80	+0.5
2,695,175	-		PGA1_c25840	0.81	+1.0
2,695,175	-		PGA1_c25840	0.81	-0.7
2,695,175	-		PGA1_c25840	0.81	+0.2
2,695,182	-		PGA1_c25840	0.82	+0.4
2,695,183	-		PGA1_c25840	0.82	+1.5
2,695,183	-		PGA1_c25840	0.82	-0.8
2,695,217	-		PGA1_c25840	0.85	+0.4
2,695,219	+		PGA1_c25840	0.85	+0.3
2,695,251	+		PGA1_c25840	0.88	+0.6
2,695,251	+		PGA1_c25840	0.88	+0.6
2,695,259	-		PGA1_c25840	0.89	+0.1
2,695,265	-		PGA1_c25840	0.89	+2.6
2,695,267	+		PGA1_c25840	0.89	-1.3
2,695,271	+		PGA1_c25840	0.90	-0.5
2,695,280	+				-0.8
2,695,288	+				-0.8
2,695,296	+				-0.8
2,695,296	+				-1.0
2,695,296	-				+1.0
2,695,304	-				+0.0
2,695,304	-				-0.7
2,695,304	-				+0.9
2,695,307	+				+2.2
2,695,330	+				-2.3
2,695,335	+				+0.9
2,695,335	+				-1.7
2,695,335	+				+0.7
2,695,338	-				-1.6
2,695,339	-				+0.7
2,695,343	-				-1.2
2,695,380	+				-3.3
2,695,390	+				+2.1
2,695,391	+				-1.1
2,695,398	-				-0.1
2,695,409	-		PGA1_c25850	0.14	+0.9
2,695,415	+		PGA1_c25850	0.17	+3.8
2,695,418	-		PGA1_c25850	0.18	+0.1
2,695,467	+		PGA1_c25850	0.43	+0.2
2,695,475	-		PGA1_c25850	0.47	+0.2
2,695,489	-		PGA1_c25850	0.54	+0.1
2,695,489	-		PGA1_c25850	0.54	+0.8
2,695,489	-		PGA1_c25850	0.54	+0.4
2,695,489	-		PGA1_c25850	0.54	+2.5
2,695,489	-		PGA1_c25850	0.54	-0.6
2,695,489	-		PGA1_c25850	0.54	+2.2
2,695,489	-		PGA1_c25850	0.54	-1.6
2,695,526	+		PGA1_c25850	0.72	+0.2
2,695,526	+		PGA1_c25850	0.72	-1.2
2,695,534	-		PGA1_c25850	0.76	-2.5
2,695,534	-		PGA1_c25850	0.76	-1.3
2,695,534	-		PGA1_c25850	0.76	+0.1
2,695,568	+				-1.6
2,695,576	-				-0.8
2,695,576	-				-3.1
2,695,601	+				-2.1
2,695,609	-				+0.8
2,695,609	-				-0.6
2,695,619	-				+0.1
2,695,634	+				-0.5
2,695,686	+				+0.2
2,695,751	+		PGA1_c25860	0.15	+0.9
2,695,751	+		PGA1_c25860	0.15	+1.1
2,695,757	-		PGA1_c25860	0.15	+2.1
2,695,784	+		PGA1_c25860	0.17	+1.2
2,695,786	+		PGA1_c25860	0.18	+0.0
2,695,795	+		PGA1_c25860	0.18	-2.8
2,695,801	-		PGA1_c25860	0.19	+0.2
2,695,801	-		PGA1_c25860	0.19	-1.8
2,695,803	-		PGA1_c25860	0.19	+0.4
2,695,818	+		PGA1_c25860	0.20	+0.4
2,695,849	+		PGA1_c25860	0.23	-0.7
2,695,854	+		PGA1_c25860	0.23	-0.4
2,695,857	-		PGA1_c25860	0.23	+1.1
2,695,857	-		PGA1_c25860	0.23	-3.4
2,695,857	-		PGA1_c25860	0.23	+0.7
2,695,919	+		PGA1_c25860	0.29	-2.2
2,695,927	-		PGA1_c25860	0.29	+1.3
2,695,947	+		PGA1_c25860	0.31	+0.4
2,695,947	+		PGA1_c25860	0.31	-1.6
2,695,958	+		PGA1_c25860	0.32	+1.1
2,695,972	+		PGA1_c25860	0.33	+0.5
2,695,972	+		PGA1_c25860	0.33	-1.6
2,695,972	+		PGA1_c25860	0.33	+2.6
2,695,980	-		PGA1_c25860	0.34	-1.1
2,695,980	-		PGA1_c25860	0.34	-1.6
2,696,017	+		PGA1_c25860	0.37	-1.3
2,696,082	+		PGA1_c25860	0.42	+1.3
2,696,174	+		PGA1_c25860	0.50	+1.4
2,696,194	-		PGA1_c25860	0.51	-1.5
2,696,195	-		PGA1_c25860	0.51	-1.1
2,696,195	-		PGA1_c25860	0.51	+2.7
2,696,201	+		PGA1_c25860	0.52	-1.9
2,696,321	+		PGA1_c25860	0.62	+0.7
2,696,321	+		PGA1_c25860	0.62	-0.6
2,696,321	+		PGA1_c25860	0.62	-1.9
2,696,329	-		PGA1_c25860	0.62	+3.2
2,696,329	-		PGA1_c25860	0.62	-0.3
2,696,380	+		PGA1_c25860	0.66	+0.1
2,696,388	-		PGA1_c25860	0.67	+0.4
2,696,388	-		PGA1_c25860	0.67	-0.5
2,696,406	-		PGA1_c25860	0.69	+0.4
2,696,430	+		PGA1_c25860	0.71	+1.0
2,696,449	-		PGA1_c25860	0.72	+2.1
2,696,459	+		PGA1_c25860	0.73	+1.1
2,696,459	+		PGA1_c25860	0.73	+0.3
2,696,465	-		PGA1_c25860	0.73	-2.9
2,696,467	-		PGA1_c25860	0.74	-2.1
2,696,483	+		PGA1_c25860	0.75	+1.4
2,696,483	-		PGA1_c25860	0.75	+1.5
2,696,527	+		PGA1_c25860	0.78	+0.7
2,696,535	-		PGA1_c25860	0.79	-0.0
2,696,545	-		PGA1_c25860	0.80	-2.4
2,696,545	-		PGA1_c25860	0.80	+1.7
2,696,572	+		PGA1_c25860	0.82	+2.0
2,696,587	+		PGA1_c25860	0.83	+1.3
2,696,590	-		PGA1_c25860	0.84	+0.6
2,696,615	+		PGA1_c25860	0.86	+0.2
2,696,615	+		PGA1_c25860	0.86	+2.5
2,696,728	+				-0.6
2,696,728	+				+0.0
2,696,728	+				-0.8
2,696,728	+				+4.2
2,696,728	+				-0.3
2,696,728	+				+0.8
2,696,728	+				-1.3
2,696,728	+				+1.0
2,696,731	-				-0.5
2,696,735	-				+0.5
2,696,736	-				+0.5
2,696,736	-				+0.3
2,696,736	-				-3.7
2,696,736	-				-0.4
2,696,736	-				+0.2
2,696,767	+				+2.2
2,696,805	+				+0.2
2,696,813	-				-0.1
2,696,857	-		PGA1_c25870	0.14	-0.5
2,696,875	+		PGA1_c25870	0.17	+0.7
2,696,878	-		PGA1_c25870	0.18	+1.6
2,696,901	-		PGA1_c25870	0.22	-0.6
2,696,927	+		PGA1_c25870	0.27	+2.1
2,696,927	-		PGA1_c25870	0.27	-0.6
2,696,927	-		PGA1_c25870	0.27	-1.3
2,696,932	+		PGA1_c25870	0.28	-0.3
2,696,984	-		PGA1_c25870	0.37	-1.3
2,696,984	-		PGA1_c25870	0.37	-1.8
2,696,991	-		PGA1_c25870	0.39	+0.8
2,697,019	-		PGA1_c25870	0.44	-2.6
2,697,037	-		PGA1_c25870	0.47	-3.6
2,697,039	-		PGA1_c25870	0.48	-2.2
2,697,080	+		PGA1_c25870	0.56	+0.0
2,697,088	-		PGA1_c25870	0.57	-0.5
2,697,098	-		PGA1_c25870	0.59	-1.3
2,697,098	-		PGA1_c25870	0.59	-0.5
2,697,098	-		PGA1_c25870	0.59	-0.4
2,697,112	-		PGA1_c25870	0.62	+1.4
2,697,210	-		PGA1_c25870	0.80	+0.3
2,697,211	-		PGA1_c25870	0.80	+0.9
2,697,251	+		PGA1_c25870	0.88	-0.3
2,697,251	+		PGA1_c25870	0.88	+2.4
2,697,251	+		PGA1_c25870	0.88	+0.4
2,697,251	+		PGA1_c25870	0.88	+0.4
2,697,259	-		PGA1_c25870	0.89	-1.6
2,697,265	+				+1.9
2,697,272	+				-0.7
2,697,280	-				-0.7
2,697,281	-				+0.4
2,697,283	+				-1.7
2,697,283	+				+1.5
2,697,285	+				+1.6
2,697,285	+				-0.7
2,697,285	+				-1.7
2,697,285	+				+2.6
2,697,285	+				-1.6
2,697,285	+				-3.1
2,697,285	+				+0.0
2,697,285	+				+0.8
2,697,285	+				+0.8
2,697,285	+				+1.5
2,697,285	+				+1.3
2,697,285	+				+0.0
2,697,285	+				-1.3
2,697,285	+				-2.3
2,697,285	+				+1.4
2,697,291	-				-0.1
2,697,291	-				+0.6
2,697,293	-				+0.7
2,697,293	-				-0.5
2,697,293	-				+1.7
2,697,293	-				+0.6
2,697,323	+				+0.1
2,697,333	-				+1.2
2,697,333	-				+0.4
2,697,335	-				-1.2
2,697,337	+				+1.4
2,697,337	+				+0.3
2,697,352	+		PGA1_c25880	0.14	+1.3
2,697,361	+		PGA1_c25880	0.17	+2.3
2,697,377	+		PGA1_c25880	0.23	-2.0
2,697,377	+		PGA1_c25880	0.23	+1.4
2,697,377	+		PGA1_c25880	0.23	+0.7
2,697,377	+		PGA1_c25880	0.23	+2.7
2,697,408	+		PGA1_c25880	0.34	-1.3
2,697,426	-		PGA1_c25880	0.40	+0.5
2,697,470	+		PGA1_c25880	0.56	+1.1
2,697,470	+		PGA1_c25880	0.56	-0.5
2,697,470	+		PGA1_c25880	0.56	+0.3
2,697,470	+		PGA1_c25880	0.56	+1.5
2,697,470	+		PGA1_c25880	0.56	-2.8
2,697,470	+		PGA1_c25880	0.56	+1.6
2,697,478	-		PGA1_c25880	0.59	+2.5
2,697,478	-		PGA1_c25880	0.59	-0.4
2,697,478	-		PGA1_c25880	0.59	+1.8
2,697,478	-		PGA1_c25880	0.59	+0.1
2,697,480	+		PGA1_c25880	0.60	-1.6
2,697,486	+		PGA1_c25880	0.62	+0.7
2,697,492	-		PGA1_c25880	0.64	-0.1
2,697,494	-		PGA1_c25880	0.65	-2.2
2,697,507	+		PGA1_c25880	0.69	+1.0
2,697,550	+		PGA1_c25880	0.84	+2.3
2,697,559	-		PGA1_c25880	0.88	-0.3
2,697,567	+				-0.1
2,697,586	-				+0.3
2,697,586	-				+1.6
2,697,637	+				-2.3
2,697,657	+				+1.0
2,697,716	+				+0.3
2,697,730	-				+0.8
2,697,737	-				+0.8
2,697,742	-				+0.4
2,697,749	-				-1.3
2,697,762	+				+1.6
2,697,784	-				-2.2