Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00240

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
24,739	+		PGA1_c00230	0.34	+2.1
24,739	+		PGA1_c00230	0.34	-2.2
24,739	+		PGA1_c00230	0.34	+1.4
24,747	-		PGA1_c00230	0.35	-0.3
24,747	-		PGA1_c00230	0.35	-0.4
24,786	-		PGA1_c00230	0.38	-3.6
24,787	-		PGA1_c00230	0.38	-0.1
24,809	+		PGA1_c00230	0.40	+1.6
24,835	-		PGA1_c00230	0.42	+1.2
24,843	-		PGA1_c00230	0.43	+1.3
24,972	+		PGA1_c00230	0.54	-2.9
24,980	-		PGA1_c00230	0.55	-2.4
25,052	+		PGA1_c00230	0.61	+2.0
25,071	+		PGA1_c00230	0.63	-2.7
25,071	+		PGA1_c00230	0.63	-0.6
25,080	-		PGA1_c00230	0.64	+0.6
25,109	-		PGA1_c00230	0.66	-1.1
25,114	-		PGA1_c00230	0.66	-1.4
25,115	+		PGA1_c00230	0.67	-1.4
25,115	+		PGA1_c00230	0.67	+1.8
25,132	-		PGA1_c00230	0.68	+0.6
25,132	-		PGA1_c00230	0.68	-1.4
25,156	+		PGA1_c00230	0.70	+0.7
25,175	+		PGA1_c00230	0.72	-2.2
25,195	+		PGA1_c00230	0.74	-0.3
25,195	+		PGA1_c00230	0.74	-0.4
25,245	-		PGA1_c00230	0.78	+0.8
25,295	-		PGA1_c00230	0.82	+0.6
25,295	-		PGA1_c00230	0.82	+0.3
25,300	-		PGA1_c00230	0.83	-0.7
25,303	-		PGA1_c00230	0.83	+0.5
25,305	-		PGA1_c00230	0.83	+1.0
25,329	+		PGA1_c00230	0.85	+0.1
25,353	+		PGA1_c00230	0.87	+0.3
25,353	-		PGA1_c00230	0.87	+2.0
25,361	-		PGA1_c00230	0.88	-2.0
25,363	+		PGA1_c00230	0.88	-0.4
25,363	+		PGA1_c00230	0.88	-0.1
25,363	+		PGA1_c00230	0.88	+1.7
25,369	-		PGA1_c00230	0.89	+0.1
25,398	+				-4.1
25,398	+				+1.6
25,398	+				+1.6
25,398	+				+2.2
25,398	+				-2.8
25,398	+				-1.2
25,398	+				-2.1
25,398	+				-0.3
25,398	+				-1.4
25,398	+				-0.4
25,405	-				-0.0
25,405	-				+0.4
25,406	-				-1.4
25,406	-				-0.4
25,406	-				-0.5
25,406	-				+0.3
25,406	-				+0.2
25,406	-				-1.5
25,416	+				-1.7
25,424	-				+0.5
25,466	+				-0.7
25,495	-				+0.3
25,496	+				+0.2
25,496	+				+0.2
25,496	+				+1.7
25,496	+				+1.7
25,496	+				+0.7
25,496	+				+1.7
25,496	+				-0.0
25,496	+				+1.5
25,496	+				+1.6
25,496	+				-3.1
25,496	+				+0.4
25,496	+				+0.2
25,496	+				+0.3
25,496	+				+0.5
25,496	+				-1.9
25,496	+				+0.9
25,496	+				-0.8
25,496	+				-0.3
25,496	+				-1.4
25,496	+				+1.2
25,496	+				-3.0
25,496	+				+1.5
25,496	+				+0.7
25,496	+				-0.1
25,496	+				-1.4
25,496	+				-1.5
25,496	+				-0.0
25,496	+				+0.1
25,496	+				-1.7
25,496	+				+0.2
25,496	+				-1.9
25,496	+				+2.4
25,496	+				+1.2
25,496	+				+1.2
25,496	+				+0.2
25,496	+				-1.0
25,496	+				-0.7
25,496	+				-2.3
25,496	+				-0.8
25,496	+				-0.6
25,496	+				-0.2
25,496	+				+0.6
25,496	+				+1.1
25,496	+				+0.8
25,496	+				-1.1
25,496	+				+2.0
25,496	+				+1.0
25,496	+				-1.9
25,501	+				+0.4
25,504	-				+1.6
25,504	-				+1.1
25,504	-				+0.4
25,504	-				-1.4
25,504	-				+0.9
25,504	-				+0.5
25,504	-				-0.2
25,504	-				+0.8
25,504	-				-1.5
25,504	-				-1.2
25,504	-				+0.9
25,504	-				-2.7
25,504	-				+0.5
25,504	-				-1.4
25,504	-				+0.7
25,504	-				+0.7
25,504	-				-2.1
25,504	-				-1.9
25,504	-				-0.4
25,504	-				-2.1
25,504	-				-0.0
25,504	-				-0.4
25,504	-				+0.1
25,504	-				-0.4
25,504	-				-0.3
25,504	-				+2.1
25,504	-				-1.0
25,504	-				-0.4
25,504	-				+1.4
25,504	-				+0.8
25,504	-				+2.4
25,504	-				-0.0
25,504	-				+0.8
25,504	-				+1.1
25,504	-				-0.1
25,504	-				-2.7
25,504	-				-0.2
25,504	-				+0.9
25,504	-				+0.2
25,504	-				+0.4
25,504	-				+1.1
25,504	-				-1.0
25,504	-				+1.4
25,504	-				-0.3
25,504	-				+1.2
25,504	-				-0.5
25,504	-				+0.3
25,504	-				+0.4
25,504	-				+0.3
25,504	-				-1.9
25,504	-				-1.9
25,509	-				+1.3
25,537	-				-1.3
25,576	+				+1.0
25,609	+				+0.1
25,627	-				+0.8
25,639	+				+1.3
25,663	-				-1.4
25,663	-				+0.8
25,666	+				+1.6
25,666	+				-2.3
25,669	+				-0.7
25,670	-				+1.1
25,670	-				-1.2
25,670	-				-0.3
25,670	-				+0.0
25,677	-				+0.6
25,688	+				-0.3
25,688	+				+1.4
25,688	+				-1.6
25,688	+				+1.8
25,688	+				-1.0
25,688	+				-0.4
25,688	+				+0.9
25,688	+				+0.1
25,688	+				+2.1
25,688	+				-3.4
25,688	+				-1.3
25,688	+				+0.5
25,689	-				-0.4
25,689	-				-0.6
25,696	-		PGA1_c00240	0.11	-0.1
25,696	-		PGA1_c00240	0.11	-1.0
25,696	-		PGA1_c00240	0.11	+0.1
25,696	-		PGA1_c00240	0.11	-1.8
25,696	-		PGA1_c00240	0.11	-0.9
25,696	-		PGA1_c00240	0.11	+0.8
25,696	-		PGA1_c00240	0.11	+1.2
25,740	-		PGA1_c00240	0.31	-0.5
25,740	-		PGA1_c00240	0.31	+0.4
25,742	+		PGA1_c00240	0.32	+0.0
25,742	+		PGA1_c00240	0.32	-1.6
25,742	+		PGA1_c00240	0.32	-1.3
25,742	+		PGA1_c00240	0.32	-1.4
25,742	+		PGA1_c00240	0.32	-0.2
25,747	+		PGA1_c00240	0.34	-1.7
25,747	+		PGA1_c00240	0.34	-0.7
25,747	+		PGA1_c00240	0.34	+0.0
25,750	-		PGA1_c00240	0.36	+1.2
25,750	-		PGA1_c00240	0.36	+1.2
25,750	-		PGA1_c00240	0.36	-2.1
25,750	-		PGA1_c00240	0.36	-1.0
25,750	-		PGA1_c00240	0.36	-3.5
25,755	-		PGA1_c00240	0.38	+0.8
25,755	-		PGA1_c00240	0.38	-2.0
25,755	-		PGA1_c00240	0.38	-1.0
25,755	-		PGA1_c00240	0.38	-1.5
25,757	+		PGA1_c00240	0.39	+0.8
25,760	-		PGA1_c00240	0.40	-0.4
25,808	+		PGA1_c00240	0.62	-0.5
25,824	-		PGA1_c00240	0.69	+0.4
25,824	-		PGA1_c00240	0.69	-0.1
25,849	-		PGA1_c00240	0.80	+0.6
25,851	+		PGA1_c00240	0.81	-2.8
25,851	+		PGA1_c00240	0.81	-0.3
25,851	+		PGA1_c00240	0.81	-1.1
25,851	+		PGA1_c00240	0.81	+0.3
25,851	+		PGA1_c00240	0.81	+0.1
25,851	+		PGA1_c00240	0.81	-0.7
25,851	+		PGA1_c00240	0.81	+1.6
25,851	+		PGA1_c00240	0.81	+0.8
25,851	+		PGA1_c00240	0.81	+0.7
25,851	+		PGA1_c00240	0.81	+0.8
25,859	-		PGA1_c00240	0.85	-2.6
25,859	-		PGA1_c00240	0.85	-2.1
25,859	-		PGA1_c00240	0.85	+1.8
25,859	-		PGA1_c00240	0.85	-1.4
25,859	-		PGA1_c00240	0.85	+1.2
25,859	-		PGA1_c00240	0.85	-1.6
25,859	-		PGA1_c00240	0.85	-2.2
25,859	-		PGA1_c00240	0.85	+2.2
25,866	+		PGA1_c00240	0.88	+1.3
25,875	+				+1.3
25,883	+				+0.1
25,883	+				+2.6
25,891	-				+1.0
25,891	-				-0.9
25,891	-				+0.4
25,891	-				-0.4
25,891	-				+0.1
25,892	+				+0.2
25,895	+				+0.6
25,898	-				-1.3
25,898	-				-1.2
25,900	+				+0.3
25,900	+				-1.1
25,905	+				+1.0
25,908	-				+1.3
25,944	-				-3.0
25,947	+				-2.5
25,947	+				+0.3
25,955	+				+0.0
25,955	-				-0.4
25,957	-				+0.7
25,966	+				+1.5
25,973	-				+0.0
25,974	-				+0.1
25,974	-				-0.1
25,998	+				-1.3
25,998	+				+0.1
25,998	+				+0.3
25,998	+				+0.1
26,000	+				+0.2
26,003	+				+0.6
26,006	-				+1.0
26,006	-				-0.1
26,006	-				-0.8
26,006	-				-0.6
26,006	-				-1.9
26,006	-				-0.9
26,008	+				-0.0
26,008	+				+1.0
26,011	-				-0.0
26,015	-				-1.2
26,016	-				-0.0
26,016	-				-1.5
26,016	-				-0.9
26,016	-				+0.5
26,033	+				-3.3
26,053	+				-0.2
26,056	-				+0.7
26,075	+				+0.3
26,085	+				-0.4
26,085	+				-2.4
26,085	+				-0.1
26,098	+				-0.2
26,098	+				+0.2
26,098	+				+1.2
26,100	+				+0.3
26,100	+				+1.3
26,106	-				-0.3
26,108	-				+1.6
26,112	+				-1.4
26,120	-				-1.4
26,173	-				+1.7
26,178	+				+0.1
26,182	-				+0.3
26,182	-				-1.8
26,186	-				-0.4
26,186	-				+0.2
26,201	+				+1.0
26,207	+				-0.4
26,209	+				-0.0
26,209	+				-3.5
26,214	+				+1.4
26,217	-				+0.4
26,217	-				+0.4
26,222	-				-0.6
26,241	+				-0.2
26,241	+				+0.5
26,250	+				+0.6
26,250	+				+1.6
26,250	+				+2.6
26,250	+				+3.4
26,250	+				+0.5
26,258	-				-2.3
26,258	-				-0.0
26,258	-				-0.2
26,284	-				-2.5
26,299	-				-0.3
26,330	+				+0.0
26,351	-				-0.3
26,351	-				-2.8
26,393	-				-0.1
26,404	+				+0.1
26,412	-				-1.3
26,429	+				-0.2
26,432	-				+0.6
26,434	+				-0.3
26,440	+				+1.6
26,440	+				+0.0
26,440	+				+0.2
26,440	+				-0.4
26,444	+				-1.0
26,446	+				+1.2
26,446	+				-0.9
26,448	-				-3.3
26,448	-				-1.7
26,452	-		PGA1_c00250	0.10	+0.0
26,452	-		PGA1_c00250	0.10	-0.6
26,452	-		PGA1_c00250	0.10	+1.2
26,452	-		PGA1_c00250	0.10	+0.8
26,454	-		PGA1_c00250	0.10	+1.3
26,484	+		PGA1_c00250	0.15	+0.7
26,484	+		PGA1_c00250	0.15	+1.2
26,484	+		PGA1_c00250	0.15	-1.3
26,484	+		PGA1_c00250	0.15	-1.1
26,485	-		PGA1_c00250	0.15	-0.7
26,490	-		PGA1_c00250	0.15	+0.6
26,492	-		PGA1_c00250	0.16	-1.6
26,492	-		PGA1_c00250	0.16	-0.7
26,497	-		PGA1_c00250	0.16	-0.5
26,502	+		PGA1_c00250	0.17	-1.1
26,502	+		PGA1_c00250	0.17	-0.4
26,502	+		PGA1_c00250	0.17	+0.2
26,502	+		PGA1_c00250	0.17	+1.4
26,505	-		PGA1_c00250	0.18	+0.1
26,505	-		PGA1_c00250	0.18	+0.8
26,507	+		PGA1_c00250	0.18	+0.8
26,507	+		PGA1_c00250	0.18	-0.1
26,510	-		PGA1_c00250	0.18	-3.4
26,510	-		PGA1_c00250	0.18	-1.7
26,511	+		PGA1_c00250	0.18	-1.6
26,524	-		PGA1_c00250	0.20	+0.3
26,524	-		PGA1_c00250	0.20	+0.7
26,526	+		PGA1_c00250	0.21	-1.9
26,526	+		PGA1_c00250	0.21	+0.2
26,534	-		PGA1_c00250	0.22	-3.6
26,550	+		PGA1_c00250	0.24	+0.7
26,550	+		PGA1_c00250	0.24	-1.7
26,551	-		PGA1_c00250	0.24	-2.0
26,558	-		PGA1_c00250	0.25	-2.2
26,585	-		PGA1_c00250	0.29	-0.9
26,591	+		PGA1_c00250	0.30	-2.0
26,593	-		PGA1_c00250	0.30	+2.2
26,594	+		PGA1_c00250	0.30	+1.4
26,609	-		PGA1_c00250	0.32	+0.8
26,634	+		PGA1_c00250	0.36	-0.6
26,634	+		PGA1_c00250	0.36	+0.8
26,634	+		PGA1_c00250	0.36	+0.1
26,634	+		PGA1_c00250	0.36	-0.6
26,634	+		PGA1_c00250	0.36	-2.1
26,634	+		PGA1_c00250	0.36	+1.2
26,642	-		PGA1_c00250	0.37	-1.5
26,642	-		PGA1_c00250	0.37	-1.8
26,642	-		PGA1_c00250	0.37	+1.0
26,642	-		PGA1_c00250	0.37	-2.8
26,664	+		PGA1_c00250	0.40	-1.4
26,664	+		PGA1_c00250	0.40	+1.4
26,665	+		PGA1_c00250	0.40	-1.3
26,672	-		PGA1_c00250	0.41	+0.3
26,672	-		PGA1_c00250	0.41	+0.3
26,673	-		PGA1_c00250	0.41	-1.3
26,701	+		PGA1_c00250	0.45	-1.6
26,708	+		PGA1_c00250	0.46	-0.1
26,708	+		PGA1_c00250	0.46	-0.3
26,715	+		PGA1_c00250	0.47	+0.3
26,715	+		PGA1_c00250	0.47	-3.3
26,720	+		PGA1_c00250	0.48	+2.4
26,720	+		PGA1_c00250	0.48	-0.6
26,720	+		PGA1_c00250	0.48	+1.4
26,720	+		PGA1_c00250	0.48	+0.1
26,720	+		PGA1_c00250	0.48	-0.2
26,720	+		PGA1_c00250	0.48	-0.3
26,720	+		PGA1_c00250	0.48	-2.6
26,720	+		PGA1_c00250	0.48	-0.0
26,720	+		PGA1_c00250	0.48	-2.4
26,720	+		PGA1_c00250	0.48	+0.6
26,720	+		PGA1_c00250	0.48	-0.7
26,725	+		PGA1_c00250	0.49	-2.7
26,727	+		PGA1_c00250	0.49	-0.0
26,728	-		PGA1_c00250	0.49	+0.8
26,728	-		PGA1_c00250	0.49	+0.6
26,728	-		PGA1_c00250	0.49	-0.7
26,728	-		PGA1_c00250	0.49	-1.0
26,728	-		PGA1_c00250	0.49	-2.0
26,728	-		PGA1_c00250	0.49	-0.1
26,728	-		PGA1_c00250	0.49	+0.0
26,735	-		PGA1_c00250	0.50	-1.3
26,763	+		PGA1_c00250	0.54	+0.5
26,763	+		PGA1_c00250	0.54	-0.3
26,763	+		PGA1_c00250	0.54	-2.6
26,763	+		PGA1_c00250	0.54	-1.3
26,763	+		PGA1_c00250	0.54	-0.0
26,763	+		PGA1_c00250	0.54	+1.9
26,768	+		PGA1_c00250	0.55	-0.5
26,771	-		PGA1_c00250	0.55	-1.5
26,771	-		PGA1_c00250	0.55	+0.1
26,771	-		PGA1_c00250	0.55	-0.4
26,797	+		PGA1_c00250	0.59	-1.4
26,821	-		PGA1_c00250	0.62	+0.1
26,823	+		PGA1_c00250	0.63	+0.6
26,828	+		PGA1_c00250	0.63	-2.4
26,830	+		PGA1_c00250	0.64	-0.2
26,831	-		PGA1_c00250	0.64	-0.8
26,831	-		PGA1_c00250	0.64	-3.8
26,838	-		PGA1_c00250	0.65	+0.6
26,838	-		PGA1_c00250	0.65	+0.3
26,838	-		PGA1_c00250	0.65	-2.3
26,842	+		PGA1_c00250	0.65	+0.6
26,850	-		PGA1_c00250	0.67	-0.7
26,871	-		PGA1_c00250	0.70	+1.2
26,880	+		PGA1_c00250	0.71	-2.2
26,880	+		PGA1_c00250	0.71	-1.2
26,883	+		PGA1_c00250	0.71	-1.9
26,885	+		PGA1_c00250	0.71	+1.2
26,888	-		PGA1_c00250	0.72	-0.4