Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20420

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,118,750	-				+1.3
2,118,776	+				+1.9
2,118,784	-				+0.2
2,118,784	-				-2.5
2,118,785	-				+0.2
2,118,815	+				-2.0
2,118,818	-				+1.0
2,118,848	-				+0.6
2,118,867	+				-3.7
2,118,875	-				+1.3
2,118,875	-				+2.5
2,118,875	-				+1.0
2,118,875	-				-3.3
2,118,875	-				+1.0
2,118,875	-				-0.5
2,118,898	-				+0.8
2,118,919	-				+0.6
2,118,919	-				+0.6
2,118,919	-				+1.7
2,118,925	-				-3.8
2,118,928	+				-1.1
2,119,024	+		PGA1_c20400	0.34	+0.6
2,119,042	-		PGA1_c20400	0.39	+1.6
2,119,057	+		PGA1_c20400	0.43	+0.2
2,119,065	-		PGA1_c20400	0.45	-0.0
2,119,065	-		PGA1_c20400	0.45	+1.4
2,119,074	-		PGA1_c20400	0.48	-0.9
2,119,076	+		PGA1_c20400	0.48	+1.2
2,119,076	+		PGA1_c20400	0.48	+0.7
2,119,076	+		PGA1_c20400	0.48	+0.6
2,119,076	+		PGA1_c20400	0.48	-2.4
2,119,076	+		PGA1_c20400	0.48	-3.1
2,119,079	-		PGA1_c20400	0.49	+0.1
2,119,079	-		PGA1_c20400	0.49	-3.2
2,119,084	-		PGA1_c20400	0.50	-0.0
2,119,084	-		PGA1_c20400	0.50	+0.5
2,119,084	-		PGA1_c20400	0.50	-2.8
2,119,084	-		PGA1_c20400	0.50	-0.4
2,119,084	-		PGA1_c20400	0.50	-0.2
2,119,084	-		PGA1_c20400	0.50	-1.6
2,119,089	-		PGA1_c20400	0.52	+0.9
2,119,092	-		PGA1_c20400	0.52	-1.9
2,119,095	-		PGA1_c20400	0.53	+1.0
2,119,095	-		PGA1_c20400	0.53	-3.5
2,119,095	-		PGA1_c20400	0.53	+1.2
2,119,095	-		PGA1_c20400	0.53	-0.4
2,119,095	-		PGA1_c20400	0.53	+1.1
2,119,095	-		PGA1_c20400	0.53	+2.2
2,119,095	-		PGA1_c20400	0.53	+1.2
2,119,100	-		PGA1_c20400	0.55	+0.7
2,119,130	-		PGA1_c20400	0.63	-3.9
2,119,130	-		PGA1_c20400	0.63	+0.6
2,119,160	-		PGA1_c20400	0.71	-0.9
2,119,200	+		PGA1_c20400	0.81	-0.4
2,119,208	-		PGA1_c20400	0.84	-2.0
2,119,232	-				-0.3
2,119,243	+				+1.5
2,119,256	+				+0.3
2,119,256	+				-0.7
2,119,258	-				-2.7
2,119,258	-				+0.3
2,119,264	-				+0.2
2,119,264	-				+1.6
2,119,264	-				+0.4
2,119,264	-				+0.2
2,119,292	-				-0.3
2,119,383	+				+1.5
2,119,445	-				+1.4
2,119,446	-				+1.2
2,119,446	-				+0.1
2,119,469	+				+0.1
2,119,505	+				+0.4
2,119,511	-				+0.8
2,119,513	-				+0.8
2,119,513	-				+0.8
2,119,661	+				+1.5
2,119,661	+				-0.8
2,119,669	-				-1.3
2,119,669	-				-0.4
2,119,669	-				-2.4
2,119,674	-				-3.3
2,119,703	+				-0.5
2,119,716	-				+0.1
2,119,816	-		PGA1_c20420	0.26	-3.7
2,119,880	+		PGA1_c20420	0.37	-0.2
2,119,890	+		PGA1_c20420	0.39	+0.3
2,119,898	-		PGA1_c20420	0.40	-0.1
2,119,898	-		PGA1_c20420	0.40	-1.0
2,119,898	-		PGA1_c20420	0.40	-1.4
2,119,942	-		PGA1_c20420	0.48	-2.3
2,120,008	+		PGA1_c20420	0.59	-1.6
2,120,058	-		PGA1_c20420	0.68	-0.2
2,120,098	+		PGA1_c20420	0.75	+0.6
2,120,155	+		PGA1_c20420	0.85	-0.2
2,120,166	+		PGA1_c20420	0.86	+1.2
2,120,167	+		PGA1_c20420	0.87	-1.6
2,120,198	-				+0.2
2,120,235	-				+1.3
2,120,235	-				-1.4
2,120,263	-				-0.0
2,120,265	-				+0.5
2,120,282	-				+1.1
2,120,295	+				+1.5
2,120,312	+				+1.2
2,120,312	+				+0.1
2,120,312	+				-2.0
2,120,312	+				-0.9
2,120,312	+				+0.4
2,120,320	-				+2.8
2,120,320	-				+0.6
2,120,320	-				-0.4
2,120,436	+				+0.3
2,120,444	-				+0.0
2,120,448	+				-0.3
2,120,456	-				-0.3
2,120,471	+				+0.1
2,120,516	-				-1.5
2,120,530	+		PGA1_c20430	0.11	-1.0
2,120,627	+		PGA1_c20430	0.34	+0.6
2,120,657	+		PGA1_c20430	0.41	+0.8
2,120,657	+		PGA1_c20430	0.41	-1.9
2,120,657	+		PGA1_c20430	0.41	+0.9
2,120,657	+		PGA1_c20430	0.41	+1.9
2,120,657	+		PGA1_c20430	0.41	+1.5
2,120,657	+		PGA1_c20430	0.41	-0.0
2,120,657	+		PGA1_c20430	0.41	+0.3
2,120,657	+		PGA1_c20430	0.41	+1.0
2,120,657	+		PGA1_c20430	0.41	+0.5
2,120,657	+		PGA1_c20430	0.41	-0.6
2,120,657	+		PGA1_c20430	0.41	-0.7
2,120,659	+		PGA1_c20430	0.42	+0.3
2,120,665	-		PGA1_c20430	0.43	+0.1
2,120,665	-		PGA1_c20430	0.43	+1.2
2,120,665	-		PGA1_c20430	0.43	-2.3
2,120,665	-		PGA1_c20430	0.43	+0.5
2,120,665	-		PGA1_c20430	0.43	-2.4
2,120,665	-		PGA1_c20430	0.43	-0.1
2,120,665	-		PGA1_c20430	0.43	+1.0
2,120,665	-		PGA1_c20430	0.43	+0.2
2,120,665	-		PGA1_c20430	0.43	-3.4
2,120,665	-		PGA1_c20430	0.43	+0.5
2,120,667	+		PGA1_c20430	0.43	+0.2
2,120,685	-		PGA1_c20430	0.48	-0.2
2,120,688	+		PGA1_c20430	0.48	-0.2
2,120,696	-		PGA1_c20430	0.50	+0.0
2,120,707	+		PGA1_c20430	0.53	-0.3
2,120,715	+		PGA1_c20430	0.55	+1.2
2,120,715	+		PGA1_c20430	0.55	-1.1
2,120,715	-		PGA1_c20430	0.55	-1.1
2,120,718	-		PGA1_c20430	0.56	-0.1
2,120,718	-		PGA1_c20430	0.56	-1.1
2,120,757	-		PGA1_c20430	0.65	-0.8
2,120,768	-		PGA1_c20430	0.67	-2.7
2,120,775	+		PGA1_c20430	0.69	-0.8
2,120,783	-		PGA1_c20430	0.71	+0.9
2,120,810	+		PGA1_c20430	0.77	-1.0
2,120,819	+		PGA1_c20430	0.79	+0.5
2,120,819	-		PGA1_c20430	0.79	+1.3
2,120,852	-		PGA1_c20430	0.87	-1.2
2,120,853	+		PGA1_c20430	0.87	+1.6
2,120,853	+		PGA1_c20430	0.87	-1.1
2,120,853	+		PGA1_c20430	0.87	-0.3
2,120,861	-		PGA1_c20430	0.89	+1.5
2,120,861	-		PGA1_c20430	0.89	-0.2
2,120,861	-		PGA1_c20430	0.89	+0.0
2,120,868	+				+1.5
2,120,868	+				+1.5
2,120,875	+				-0.3
2,120,875	+				+1.3
2,120,892	-				+0.4
2,120,928	-				+0.3
2,120,955	-				-2.3
2,120,974	+				-0.2
2,120,974	+				-0.3
2,120,974	+				-0.3
2,120,982	-				+2.1
2,120,982	-				+1.0
2,120,982	-				-2.8
2,120,982	-				+2.8
2,121,096	-		PGA1_c20440	0.43	-0.0
2,121,101	+		PGA1_c20440	0.44	-0.1
2,121,109	-		PGA1_c20440	0.46	+2.3
2,121,109	-		PGA1_c20440	0.46	-2.3
2,121,109	-		PGA1_c20440	0.46	+0.2
2,121,109	-		PGA1_c20440	0.46	+0.2
2,121,125	-		PGA1_c20440	0.51	-1.4
2,121,127	+		PGA1_c20440	0.52	-0.2
2,121,135	-		PGA1_c20440	0.54	+0.2
2,121,135	-		PGA1_c20440	0.54	-0.7
2,121,165	+		PGA1_c20440	0.63	+0.5
2,121,168	-		PGA1_c20440	0.63	+1.0
2,121,173	-		PGA1_c20440	0.65	-3.5
2,121,173	-		PGA1_c20440	0.65	+0.5
2,121,175	+		PGA1_c20440	0.66	+0.9
2,121,216	+		PGA1_c20440	0.77	-1.5
2,121,231	-		PGA1_c20440	0.82	-3.0
2,121,231	-		PGA1_c20440	0.82	-1.1