Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12460

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
1,291,805	-				-0.2
1,291,934	-		PGA1_c12450	0.14	+0.0
1,291,943	-		PGA1_c12450	0.15	+0.4
1,292,011	-		PGA1_c12450	0.23	+0.8
1,292,083	+		PGA1_c12450	0.31	+0.2
1,292,083	+		PGA1_c12450	0.31	+0.2
1,292,083	-		PGA1_c12450	0.31	+0.9
1,292,136	+		PGA1_c12450	0.38	+0.9
1,292,136	-		PGA1_c12450	0.38	-0.8
1,292,136	-		PGA1_c12450	0.38	-1.0
1,292,162	+		PGA1_c12450	0.41	+1.8
1,292,185	+		PGA1_c12450	0.43	+0.4
1,292,185	+		PGA1_c12450	0.43	-0.2
1,292,193	-		PGA1_c12450	0.44	+0.1
1,292,193	-		PGA1_c12450	0.44	-1.0
1,292,230	-		PGA1_c12450	0.49	+1.8
1,292,379	-		PGA1_c12450	0.66	+1.7
1,292,445	-		PGA1_c12450	0.74	-0.2
1,292,453	-		PGA1_c12450	0.75	+1.2
1,292,514	+		PGA1_c12450	0.82	+0.3
1,292,535	+		PGA1_c12450	0.84	+2.1
1,292,535	+		PGA1_c12450	0.84	+0.3
1,292,535	+		PGA1_c12450	0.84	+0.3
1,292,566	-		PGA1_c12450	0.88	+1.5
1,292,884	-				+1.7
1,292,914	+				+2.2
1,292,945	+		PGA1_c12460	0.11	+0.6
1,292,980	+		PGA1_c12460	0.13	+1.3
1,292,980	+		PGA1_c12460	0.13	+1.7
1,292,981	+		PGA1_c12460	0.13	+1.7
1,292,988	-		PGA1_c12460	0.13	-2.6
1,292,988	-		PGA1_c12460	0.13	-1.7
1,292,988	-		PGA1_c12460	0.13	+0.2
1,292,988	-		PGA1_c12460	0.13	-2.5
1,292,988	-		PGA1_c12460	0.13	-0.2
1,292,988	-		PGA1_c12460	0.13	-2.0
1,292,988	-		PGA1_c12460	0.13	+0.3
1,292,988	-		PGA1_c12460	0.13	+0.6
1,292,988	-		PGA1_c12460	0.13	+1.8
1,292,988	-		PGA1_c12460	0.13	+0.9
1,292,988	-		PGA1_c12460	0.13	-0.2
1,292,988	-		PGA1_c12460	0.13	-2.3
1,292,988	-		PGA1_c12460	0.13	-0.1
1,292,988	-		PGA1_c12460	0.13	-1.0
1,293,059	+		PGA1_c12460	0.17	+1.3
1,293,125	+		PGA1_c12460	0.21	-2.5
1,293,151	-		PGA1_c12460	0.23	-0.4
1,293,211	+		PGA1_c12460	0.26	-0.0
1,293,246	+		PGA1_c12460	0.28	+2.8
1,293,246	+		PGA1_c12460	0.28	+0.9
1,293,247	+		PGA1_c12460	0.28	+0.1
1,293,254	-		PGA1_c12460	0.29	-0.2
1,293,288	-		PGA1_c12460	0.31	+0.1
1,293,342	+		PGA1_c12460	0.34	+0.4
1,293,404	+		PGA1_c12460	0.38	+0.5
1,293,413	+		PGA1_c12460	0.38	+0.5
1,293,413	+		PGA1_c12460	0.38	-0.8
1,293,413	-		PGA1_c12460	0.38	+0.3
1,293,421	-		PGA1_c12460	0.39	+0.6
1,293,421	-		PGA1_c12460	0.39	+1.1
1,293,421	-		PGA1_c12460	0.39	-1.3
1,293,491	+		PGA1_c12460	0.43	-0.6
1,293,509	-		PGA1_c12460	0.44	+1.3
1,293,559	-		PGA1_c12460	0.47	+2.2
1,293,652	-		PGA1_c12460	0.52	+1.0
1,293,675	-		PGA1_c12460	0.54	+0.4
1,293,765	+		PGA1_c12460	0.59	-0.8
1,293,768	-		PGA1_c12460	0.59	-1.9
1,293,773	-		PGA1_c12460	0.59	+2.7
1,293,773	-		PGA1_c12460	0.59	-0.1
1,293,796	-		PGA1_c12460	0.61	+1.5
1,293,878	-		PGA1_c12460	0.65	+0.3
1,293,880	+		PGA1_c12460	0.66	+1.2
1,293,979	-		PGA1_c12460	0.71	-1.1
1,293,981	+		PGA1_c12460	0.72	-1.0
1,294,043	-		PGA1_c12460	0.75	+0.5
1,294,183	-		PGA1_c12460	0.83	+1.0
1,294,192	+		PGA1_c12460	0.84	+0.8
1,294,250	+		PGA1_c12460	0.87	-0.7
1,294,250	+		PGA1_c12460	0.87	+0.0
1,294,256	+		PGA1_c12460	0.88	+1.5
1,294,257	+		PGA1_c12460	0.88	-0.7
1,294,279	+		PGA1_c12460	0.89	-1.7
1,294,289	+		PGA1_c12460	0.90	+0.9
1,294,289	+		PGA1_c12460	0.90	-1.2
1,294,297	-				+2.3
1,294,297	-				-1.7
1,294,297	-				-2.0
1,294,322	+				+1.0
1,294,322	+				+0.0
1,294,330	-				+0.0
1,294,338	+				-0.2
1,294,384	-				+0.3
1,294,384	-				-0.2
1,294,384	-				+2.2
1,294,384	-				-2.9
1,294,386	-				+1.3
1,294,417	+				-0.7
1,294,417	+				-0.1
1,294,425	-				+2.0
1,294,448	+				-0.2
1,294,448	+				+0.8
1,294,456	-				+0.8
1,294,456	-				+1.8
1,294,456	-				+0.1
1,294,610	-				-0.3
1,294,615	-				+0.5
1,294,626	-				+0.2
1,294,674	+		PGA1_c12470	0.11	+0.1
1,294,677	-		PGA1_c12470	0.11	-0.7
1,294,687	+		PGA1_c12470	0.12	+1.2
1,294,722	-		PGA1_c12470	0.14	+0.3
1,294,750	+		PGA1_c12470	0.17	+0.8
1,294,807	-		PGA1_c12470	0.21	-0.8
1,294,829	-		PGA1_c12470	0.23	+0.7
1,294,835	+		PGA1_c12470	0.23	+0.3
1,294,845	-		PGA1_c12470	0.24	-2.0
1,294,882	-		PGA1_c12470	0.27	+1.0
1,294,882	-		PGA1_c12470	0.27	+1.2
1,294,884	+		PGA1_c12470	0.27	+0.3
1,294,892	-		PGA1_c12470	0.28	+1.2
1,294,928	-		PGA1_c12470	0.31	+1.0
1,294,930	+		PGA1_c12470	0.31	-1.5
1,294,930	+		PGA1_c12470	0.31	-2.1
1,294,938	-		PGA1_c12470	0.31	+2.1
1,294,949	-		PGA1_c12470	0.32	+0.8
1,294,959	-		PGA1_c12470	0.33	-1.3
1,295,014	-		PGA1_c12470	0.37	+0.6
1,295,024	-		PGA1_c12470	0.38	-2.4
1,295,034	+		PGA1_c12470	0.39	+0.5
1,295,034	+		PGA1_c12470	0.39	-0.6
1,295,034	+		PGA1_c12470	0.39	+1.7
1,295,034	+		PGA1_c12470	0.39	-0.1
1,295,042	-		PGA1_c12470	0.39	-1.1
1,295,042	-		PGA1_c12470	0.39	-0.2
1,295,047	+		PGA1_c12470	0.40	-3.1
1,295,081	+		PGA1_c12470	0.43	-0.7
1,295,102	+		PGA1_c12470	0.44	-0.4
1,295,104	-		PGA1_c12470	0.44	-0.1
1,295,104	-		PGA1_c12470	0.44	-2.4
1,295,127	-		PGA1_c12470	0.46	+1.3
1,295,142	+		PGA1_c12470	0.47	+0.2
1,295,189	+		PGA1_c12470	0.51	-1.2
1,295,237	-		PGA1_c12470	0.55	-0.1
1,295,254	+		PGA1_c12470	0.56	+0.1
1,295,259	+		PGA1_c12470	0.57	-0.2
1,295,262	-		PGA1_c12470	0.57	+0.8
1,295,324	+		PGA1_c12470	0.62	-1.7
1,295,332	-		PGA1_c12470	0.62	-0.5
1,295,332	-		PGA1_c12470	0.62	+0.4
1,295,332	-		PGA1_c12470	0.62	+0.3
1,295,355	-		PGA1_c12470	0.64	+1.5
1,295,386	-		PGA1_c12470	0.67	-1.0
1,295,386	-		PGA1_c12470	0.67	-2.7
1,295,437	+		PGA1_c12470	0.71	-1.8
1,295,445	-		PGA1_c12470	0.71	-3.1
1,295,447	+		PGA1_c12470	0.71	+2.5
1,295,447	+		PGA1_c12470	0.71	+1.6
1,295,455	-		PGA1_c12470	0.72	+1.9