Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2073 and HP15_2074 overlap by 1 nucleotides HP15_2074 and HP15_2075 are separated by 7 nucleotides
HP15_2073: HP15_2073 - peptidyl-arginine deiminase family protein, at 2,173,252 to 2,174,250
_2073
HP15_2074: HP15_2074 - carbon-nitrogen hydrolase family protein, at 2,174,250 to 2,175,173
_2074
HP15_2075: HP15_2075 - MoxR protein, at 2,175,181 to 2,176,092
_2075
Position (kb)
2174
2175
2176 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2173.257 kb on + strand at 2173.649 kb on - strand, within HP15_2073 at 2173.879 kb on - strand, within HP15_2073 at 2173.917 kb on + strand, within HP15_2073 at 2173.959 kb on - strand, within HP15_2073 at 2173.996 kb on + strand, within HP15_2073 at 2174.004 kb on - strand, within HP15_2073 at 2174.009 kb on - strand, within HP15_2073 at 2174.029 kb on - strand, within HP15_2073 at 2174.102 kb on + strand, within HP15_2073 at 2174.414 kb on - strand, within HP15_2074 at 2174.450 kb on + strand, within HP15_2074 at 2174.503 kb on - strand, within HP15_2074 at 2174.527 kb on - strand, within HP15_2074 at 2174.739 kb on + strand, within HP15_2074 at 2174.754 kb on - strand, within HP15_2074 at 2174.895 kb on + strand, within HP15_2074 at 2174.928 kb on + strand, within HP15_2074 at 2175.339 kb on + strand, within HP15_2075 at 2175.347 kb on - strand, within HP15_2075 at 2175.457 kb on + strand, within HP15_2075 at 2175.528 kb on + strand, within HP15_2075 at 2175.616 kb on - strand, within HP15_2075 at 2175.635 kb on - strand, within HP15_2075 at 2175.643 kb on - strand, within HP15_2075 at 2175.726 kb on - strand, within HP15_2075 at 2175.779 kb on - strand, within HP15_2075 at 2175.795 kb on + strand, within HP15_2075 at 2175.840 kb on - strand, within HP15_2075 at 2175.936 kb on + strand, within HP15_2075 at 2175.936 kb on + strand, within HP15_2075 at 2175.939 kb on - strand, within HP15_2075 at 2175.981 kb on + strand, within HP15_2075 at 2175.989 kb on - strand, within HP15_2075 at 2176.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 2,173,257 + -0.1 2,173,649 - HP15_2073 0.40 -1.3 2,173,879 - HP15_2073 0.63 -1.0 2,173,917 + HP15_2073 0.67 -1.3 2,173,959 - HP15_2073 0.71 -2.1 2,173,996 + HP15_2073 0.74 -1.0 2,174,004 - HP15_2073 0.75 -0.9 2,174,009 - HP15_2073 0.76 -1.7 2,174,029 - HP15_2073 0.78 -2.1 2,174,102 + HP15_2073 0.85 -0.7 2,174,414 - HP15_2074 0.18 -2.9 2,174,450 + HP15_2074 0.22 -5.3 2,174,503 - HP15_2074 0.27 -4.6 2,174,527 - HP15_2074 0.30 -1.7 2,174,739 + HP15_2074 0.53 -2.3 2,174,754 - HP15_2074 0.55 -1.5 2,174,895 + HP15_2074 0.70 -1.6 2,174,928 + HP15_2074 0.73 -1.9 2,175,339 + HP15_2075 0.17 +0.0 2,175,347 - HP15_2075 0.18 -0.3 2,175,457 + HP15_2075 0.30 +0.3 2,175,528 + HP15_2075 0.38 +0.3 2,175,616 - HP15_2075 0.48 -1.0 2,175,635 - HP15_2075 0.50 -1.3 2,175,643 - HP15_2075 0.51 -0.4 2,175,726 - HP15_2075 0.60 +0.0 2,175,779 - HP15_2075 0.66 -0.3 2,175,795 + HP15_2075 0.67 +0.0 2,175,840 - HP15_2075 0.72 -0.1 2,175,936 + HP15_2075 0.83 +0.1 2,175,936 + HP15_2075 0.83 +0.5 2,175,939 - HP15_2075 0.83 -0.1 2,175,981 + HP15_2075 0.88 -1.7 2,175,989 - HP15_2075 0.89 -0.3 2,176,016 + +0.3
Or see this region's nucleotide sequence