Strain Fitness in Marinobacter adhaerens HP15 around HP15_1390

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1388 and HP15_1389 overlap by 1 nucleotidesHP15_1389 and HP15_1390 are separated by 164 nucleotidesHP15_1390 and HP15_1391 are separated by 13 nucleotidesHP15_1391 and HP15_1392 are separated by 47 nucleotidesHP15_1392 and HP15_1393 are separated by 18 nucleotides HP15_1388: HP15_1388 - iron-containing alcohol dehydrogenase, at 1,464,161 to 1,465,348 _1388 HP15_1389: HP15_1389 - conserved hypothetical protein, at 1,465,348 to 1,465,902 _1389 HP15_1390: HP15_1390 - peptidase M48, Ste24p, at 1,466,067 to 1,467,344 _1390 HP15_1391: HP15_1391 - hypothetical protein, at 1,467,358 to 1,467,495 _1391 HP15_1392: HP15_1392 - membrane protein containing DUF599, at 1,467,543 to 1,468,283 _1392 HP15_1393: HP15_1393 - thioesterase superfamily protein, at 1,468,302 to 1,468,772 _1393 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -1 0 1at 1465.257 kb on + strandat 1465.282 kb on + strandat 1465.290 kb on - strandat 1465.454 kb on - strand, within HP15_1389at 1465.506 kb on - strand, within HP15_1389at 1465.689 kb on - strand, within HP15_1389at 1465.707 kb on + strand, within HP15_1389at 1465.715 kb on - strand, within HP15_1389at 1465.748 kb on + strand, within HP15_1389at 1465.804 kb on - strand, within HP15_1389at 1466.022 kb on + strandat 1466.032 kb on - strandat 1466.139 kb on - strandat 1466.171 kb on + strandat 1466.235 kb on + strand, within HP15_1390at 1466.278 kb on - strand, within HP15_1390at 1466.458 kb on + strand, within HP15_1390at 1466.537 kb on - strand, within HP15_1390at 1466.589 kb on + strand, within HP15_1390at 1466.638 kb on + strand, within HP15_1390at 1466.638 kb on + strand, within HP15_1390at 1466.724 kb on + strand, within HP15_1390at 1466.830 kb on + strand, within HP15_1390at 1466.895 kb on + strand, within HP15_1390at 1466.926 kb on - strand, within HP15_1390at 1466.928 kb on + strand, within HP15_1390at 1466.958 kb on + strand, within HP15_1390at 1467.058 kb on + strand, within HP15_1390at 1467.168 kb on - strand, within HP15_1390at 1467.193 kb on + strand, within HP15_1390at 1467.292 kb on + strandat 1467.381 kb on + strand, within HP15_1391at 1467.381 kb on + strand, within HP15_1391at 1467.600 kb on - strandat 1467.660 kb on - strand, within HP15_1392at 1467.740 kb on + strand, within HP15_1392at 1467.753 kb on + strand, within HP15_1392at 1467.811 kb on + strand, within HP15_1392at 1467.811 kb on - strand, within HP15_1392at 1467.819 kb on - strand, within HP15_1392at 1467.830 kb on + strand, within HP15_1392at 1467.888 kb on + strand, within HP15_1392at 1468.078 kb on - strand, within HP15_1392at 1468.156 kb on + strand, within HP15_1392at 1468.216 kb on + strandat 1468.290 kb on + strandat 1468.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
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1,465,257 + +0.5
1,465,282 + -0.7
1,465,290 - -0.5
1,465,454 - HP15_1389 0.19 +0.5
1,465,506 - HP15_1389 0.28 +0.1
1,465,689 - HP15_1389 0.61 -0.3
1,465,707 + HP15_1389 0.65 +0.2
1,465,715 - HP15_1389 0.66 +0.3
1,465,748 + HP15_1389 0.72 +0.2
1,465,804 - HP15_1389 0.82 +0.1
1,466,022 + +0.3
1,466,032 - -0.2
1,466,139 - -0.2
1,466,171 + -0.4
1,466,235 + HP15_1390 0.13 +0.2
1,466,278 - HP15_1390 0.17 -0.4
1,466,458 + HP15_1390 0.31 +0.6
1,466,537 - HP15_1390 0.37 +0.8
1,466,589 + HP15_1390 0.41 -1.1
1,466,638 + HP15_1390 0.45 -0.3
1,466,638 + HP15_1390 0.45 -0.0
1,466,724 + HP15_1390 0.51 -0.1
1,466,830 + HP15_1390 0.60 -0.1
1,466,895 + HP15_1390 0.65 -0.1
1,466,926 - HP15_1390 0.67 +0.1
1,466,928 + HP15_1390 0.67 -0.2
1,466,958 + HP15_1390 0.70 +0.7
1,467,058 + HP15_1390 0.78 -0.6
1,467,168 - HP15_1390 0.86 -0.2
1,467,193 + HP15_1390 0.88 +0.1
1,467,292 + +0.2
1,467,381 + HP15_1391 0.17 -0.2
1,467,381 + HP15_1391 0.17 -0.2
1,467,600 - +0.5
1,467,660 - HP15_1392 0.16 -0.3
1,467,740 + HP15_1392 0.27 -0.8
1,467,753 + HP15_1392 0.28 -0.1
1,467,811 + HP15_1392 0.36 +0.7
1,467,811 - HP15_1392 0.36 -0.5
1,467,819 - HP15_1392 0.37 +0.1
1,467,830 + HP15_1392 0.39 +0.5
1,467,888 + HP15_1392 0.47 +1.0
1,468,078 - HP15_1392 0.72 -0.5
1,468,156 + HP15_1392 0.83 -0.1
1,468,216 + -0.3
1,468,290 + +0.3
1,468,298 - +0.3

Or see this region's nucleotide sequence