Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1069 and HP15_1070 are separated by 81 nucleotides HP15_1070 and HP15_1071 are separated by 154 nucleotides
HP15_1069: HP15_1069 - TRAP transporter solute receptor, TAXI family protein, at 1,096,856 to 1,097,839
_1069
HP15_1070: HP15_1070 - TRAP-type uncharacterized transport system, fused permease component, at 1,097,921 to 1,100,524
_1070
HP15_1071: HP15_1071 - threonyl-tRNA synthetase, at 1,100,679 to 1,102,604
_1071
Position (kb)
1097
1098
1099
1100
1101 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1096.935 kb on + strand at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.178 kb on - strand, within HP15_1069 at 1097.205 kb on - strand, within HP15_1069 at 1097.228 kb on - strand, within HP15_1069 at 1097.243 kb on - strand, within HP15_1069 at 1097.371 kb on - strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.418 kb on - strand, within HP15_1069 at 1097.434 kb on + strand, within HP15_1069 at 1097.442 kb on - strand, within HP15_1069 at 1097.502 kb on + strand at 1097.543 kb on - strand, within HP15_1069 at 1097.660 kb on - strand, within HP15_1069 at 1097.787 kb on - strand at 1097.794 kb on - strand at 1097.865 kb on + strand at 1097.946 kb on - strand at 1098.258 kb on + strand, within HP15_1070 at 1098.937 kb on + strand, within HP15_1070 at 1098.937 kb on + strand, within HP15_1070 at 1099.005 kb on + strand, within HP15_1070 at 1099.013 kb on - strand, within HP15_1070 at 1099.013 kb on - strand, within HP15_1070 at 1099.047 kb on + strand, within HP15_1070 at 1099.055 kb on + strand, within HP15_1070 at 1099.055 kb on + strand, within HP15_1070 at 1099.063 kb on - strand, within HP15_1070 at 1099.063 kb on - strand, within HP15_1070 at 1099.063 kb on - strand, within HP15_1070 at 1099.155 kb on - strand, within HP15_1070 at 1099.256 kb on + strand, within HP15_1070 at 1099.264 kb on - strand, within HP15_1070 at 1099.264 kb on - strand, within HP15_1070 at 1099.312 kb on - strand, within HP15_1070 at 1099.483 kb on + strand, within HP15_1070 at 1099.535 kb on - strand, within HP15_1070 at 1099.592 kb on - strand, within HP15_1070 at 1099.765 kb on - strand, within HP15_1070 at 1099.934 kb on + strand, within HP15_1070 at 1100.194 kb on - strand, within HP15_1070 at 1100.204 kb on - strand, within HP15_1070 at 1100.399 kb on - strand at 1100.404 kb on - strand at 1100.468 kb on - strand at 1100.493 kb on + strand at 1100.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 1,096,935 + -0.2 1,097,170 + HP15_1069 0.32 -0.2 1,097,170 + HP15_1069 0.32 -2.1 1,097,170 + HP15_1069 0.32 -0.4 1,097,178 - HP15_1069 0.33 -0.4 1,097,205 - HP15_1069 0.35 +0.2 1,097,228 - HP15_1069 0.38 -1.1 1,097,243 - HP15_1069 0.39 -0.7 1,097,371 - HP15_1069 0.52 -0.3 1,097,410 + HP15_1069 0.56 -0.6 1,097,410 + HP15_1069 0.56 -0.4 1,097,410 + HP15_1069 0.56 -0.2 1,097,418 - HP15_1069 0.57 +0.2 1,097,434 + HP15_1069 0.59 +1.0 1,097,442 - HP15_1069 0.60 -1.5 1,097,502 + -0.6 1,097,543 - HP15_1069 0.70 +0.5 1,097,660 - HP15_1069 0.82 +0.5 1,097,787 - +1.0 1,097,794 - -0.5 1,097,865 + -0.7 1,097,946 - -2.9 1,098,258 + HP15_1070 0.13 +0.3 1,098,937 + HP15_1070 0.39 -1.2 1,098,937 + HP15_1070 0.39 -0.6 1,099,005 + HP15_1070 0.42 -1.0 1,099,013 - HP15_1070 0.42 -0.1 1,099,013 - HP15_1070 0.42 -1.5 1,099,047 + HP15_1070 0.43 -0.7 1,099,055 + HP15_1070 0.44 -0.1 1,099,055 + HP15_1070 0.44 -0.8 1,099,063 - HP15_1070 0.44 -0.4 1,099,063 - HP15_1070 0.44 -0.9 1,099,063 - HP15_1070 0.44 -0.1 1,099,155 - HP15_1070 0.47 -0.6 1,099,256 + HP15_1070 0.51 -1.9 1,099,264 - HP15_1070 0.52 -1.2 1,099,264 - HP15_1070 0.52 -1.4 1,099,312 - HP15_1070 0.53 -0.4 1,099,483 + HP15_1070 0.60 -0.5 1,099,535 - HP15_1070 0.62 -1.2 1,099,592 - HP15_1070 0.64 -0.9 1,099,765 - HP15_1070 0.71 +0.6 1,099,934 + HP15_1070 0.77 -1.0 1,100,194 - HP15_1070 0.87 -0.6 1,100,204 - HP15_1070 0.88 -1.0 1,100,399 - -0.4 1,100,404 - -0.0 1,100,468 - -1.0 1,100,493 + -0.8 1,100,560 - -0.2
Or see this region's nucleotide sequence