Strain Fitness in Marinobacter adhaerens HP15 around HP15_31

Experiment: m.b. acetate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_29 and HP15_30 are separated by 225 nucleotidesHP15_30 and HP15_31 are separated by 52 nucleotidesHP15_31 and HP15_32 are separated by 50 nucleotides HP15_29: HP15_29 - methyl-accepting chemotaxis sensory transducer, at 34,034 to 35,599 _29 HP15_30: HP15_30 - dioxygenase DitA ferredoxin component-like protein, at 35,825 to 35,959 _30 HP15_31: HP15_31 - short-chain dehydrogenase/reductase SDR, at 36,012 to 36,770 _31 HP15_32: HP15_32 - glyoxalase/bleomycin resistance protein/dioxygenase, at 36,821 to 37,774 _32 Position (kb) 36 37Strain fitness (log2 ratio) -1 0 1at 35.073 kb on + strand, within HP15_29at 35.081 kb on - strand, within HP15_29at 35.081 kb on - strand, within HP15_29at 35.081 kb on - strand, within HP15_29at 35.102 kb on - strand, within HP15_29at 35.104 kb on + strand, within HP15_29at 35.112 kb on - strand, within HP15_29at 35.120 kb on + strand, within HP15_29at 35.171 kb on + strand, within HP15_29at 35.179 kb on - strand, within HP15_29at 35.179 kb on - strand, within HP15_29at 35.196 kb on - strand, within HP15_29at 35.196 kb on - strand, within HP15_29at 35.335 kb on + strand, within HP15_29at 35.349 kb on - strand, within HP15_29at 35.379 kb on - strand, within HP15_29at 35.397 kb on + strand, within HP15_29at 35.472 kb on + strandat 35.523 kb on - strandat 35.540 kb on - strandat 35.540 kb on - strandat 35.564 kb on - strandat 35.587 kb on + strandat 35.603 kb on + strandat 35.611 kb on - strandat 35.637 kb on + strandat 35.637 kb on + strandat 35.825 kb on - strandat 35.859 kb on - strand, within HP15_30at 35.899 kb on + strand, within HP15_30at 35.909 kb on + strand, within HP15_30at 35.909 kb on + strand, within HP15_30at 35.914 kb on + strand, within HP15_30at 35.917 kb on - strand, within HP15_30at 35.922 kb on - strand, within HP15_30at 35.954 kb on + strandat 36.010 kb on - strandat 36.018 kb on - strandat 36.060 kb on + strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.210 kb on - strand, within HP15_31at 36.211 kb on + strand, within HP15_31at 36.211 kb on + strand, within HP15_31at 36.219 kb on - strand, within HP15_31at 36.219 kb on - strand, within HP15_31at 36.230 kb on - strand, within HP15_31at 36.262 kb on + strand, within HP15_31at 36.355 kb on + strand, within HP15_31at 36.427 kb on + strand, within HP15_31at 36.455 kb on + strand, within HP15_31at 36.462 kb on - strand, within HP15_31at 36.496 kb on - strand, within HP15_31at 36.536 kb on - strand, within HP15_31at 36.561 kb on + strand, within HP15_31at 36.580 kb on + strand, within HP15_31at 36.595 kb on + strand, within HP15_31at 36.658 kb on + strand, within HP15_31at 36.658 kb on + strand, within HP15_31at 36.721 kb on - strandat 36.864 kb on - strandat 36.876 kb on + strandat 36.885 kb on - strandat 36.885 kb on - strandat 36.900 kb on + strandat 36.900 kb on + strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.978 kb on + strand, within HP15_32at 37.166 kb on + strand, within HP15_32at 37.211 kb on + strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.246 kb on + strand, within HP15_32at 37.265 kb on + strand, within HP15_32at 37.298 kb on - strand, within HP15_32at 37.355 kb on - strand, within HP15_32at 37.369 kb on + strand, within HP15_32at 37.369 kb on + strand, within HP15_32at 37.377 kb on - strand, within HP15_32at 37.379 kb on + strand, within HP15_32at 37.412 kb on + strand, within HP15_32at 37.461 kb on + strand, within HP15_32at 37.469 kb on - strand, within HP15_32at 37.485 kb on + strand, within HP15_32at 37.617 kb on + strand, within HP15_32at 37.658 kb on - strand, within HP15_32at 37.658 kb on - strand, within HP15_32at 37.669 kb on + strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
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35,073 + HP15_29 0.66 -0.2
35,081 - HP15_29 0.67 +0.3
35,081 - HP15_29 0.67 -0.4
35,081 - HP15_29 0.67 -0.3
35,102 - HP15_29 0.68 -1.2
35,104 + HP15_29 0.68 -0.8
35,112 - HP15_29 0.69 +1.1
35,120 + HP15_29 0.69 -0.8
35,171 + HP15_29 0.73 -0.1
35,179 - HP15_29 0.73 -0.3
35,179 - HP15_29 0.73 -0.0
35,196 - HP15_29 0.74 +0.2
35,196 - HP15_29 0.74 +1.6
35,335 + HP15_29 0.83 +1.1
35,349 - HP15_29 0.84 +0.5
35,379 - HP15_29 0.86 -0.3
35,397 + HP15_29 0.87 +0.6
35,472 + -0.3
35,523 - -0.1
35,540 - -0.4
35,540 - -1.1
35,564 - -0.3
35,587 + -0.0
35,603 + +0.0
35,611 - +0.5
35,637 + +1.1
35,637 + +0.4
35,825 - -0.2
35,859 - HP15_30 0.25 +0.1
35,899 + HP15_30 0.55 -0.0
35,909 + HP15_30 0.62 -0.5
35,909 + HP15_30 0.62 -0.2
35,914 + HP15_30 0.66 +0.1
35,917 - HP15_30 0.68 -0.2
35,922 - HP15_30 0.72 +0.7
35,954 + +0.5
36,010 - +0.8
36,018 - -0.6
36,060 + +0.2
36,068 - +0.7
36,068 - -0.1
36,068 - -0.5
36,068 - +0.5
36,210 - HP15_31 0.26 +0.5
36,211 + HP15_31 0.26 -0.2
36,211 + HP15_31 0.26 +1.0
36,219 - HP15_31 0.27 -0.2
36,219 - HP15_31 0.27 +0.0
36,230 - HP15_31 0.29 +0.9
36,262 + HP15_31 0.33 +0.8
36,355 + HP15_31 0.45 +1.0
36,427 + HP15_31 0.55 +1.2
36,455 + HP15_31 0.58 +0.2
36,462 - HP15_31 0.59 -0.3
36,496 - HP15_31 0.64 +0.3
36,536 - HP15_31 0.69 +1.2
36,561 + HP15_31 0.72 +0.8
36,580 + HP15_31 0.75 -0.5
36,595 + HP15_31 0.77 -1.5
36,658 + HP15_31 0.85 +1.3
36,658 + HP15_31 0.85 +1.0
36,721 - +0.0
36,864 - -0.5
36,876 + -0.4
36,885 - -0.1
36,885 - +0.6
36,900 + -0.7
36,900 + -0.2
36,908 - -0.6
36,908 - -0.9
36,908 - +0.4
36,908 - +0.7
36,978 + HP15_32 0.16 -0.1
37,166 + HP15_32 0.36 +1.2
37,211 + HP15_32 0.41 -0.8
37,219 - HP15_32 0.42 +0.5
37,219 - HP15_32 0.42 -0.5
37,219 - HP15_32 0.42 -0.6
37,246 + HP15_32 0.45 +1.2
37,265 + HP15_32 0.47 -0.7
37,298 - HP15_32 0.50 +0.9
37,355 - HP15_32 0.56 -0.8
37,369 + HP15_32 0.57 +0.9
37,369 + HP15_32 0.57 -1.4
37,377 - HP15_32 0.58 -0.1
37,379 + HP15_32 0.58 +0.4
37,412 + HP15_32 0.62 -0.1
37,461 + HP15_32 0.67 +0.5
37,469 - HP15_32 0.68 +1.0
37,485 + HP15_32 0.70 -0.7
37,617 + HP15_32 0.83 -0.4
37,658 - HP15_32 0.88 +1.2
37,658 - HP15_32 0.88 -0.1
37,669 + HP15_32 0.89 +0.1
37,677 - HP15_32 0.90 +1.3
37,677 - HP15_32 0.90 +0.7
37,677 - HP15_32 0.90 +0.9
37,677 - HP15_32 0.90 -0.2
37,677 - HP15_32 0.90 +0.7
37,714 - +0.8

Or see this region's nucleotide sequence