Strain Fitness in Marinobacter adhaerens HP15 around HP15_167

Experiment: m.b. acetate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_166 and HP15_167 are separated by 273 nucleotidesHP15_167 and HP15_168 are separated by 672 nucleotidesHP15_168 and HP15_169 are separated by 87 nucleotides HP15_166: HP15_166 - cation efflux system protein, at 161,207 to 162,103 _166 HP15_167: HP15_167 - methionine-rich hypothetical protein, at 162,377 to 162,736 _167 HP15_168: HP15_168 - conserved hypothetical protein, at 163,409 to 163,513 _168 HP15_169: HP15_169 - hypothetical protein, at 163,601 to 163,714 _169 Position (kb) 162 163Strain fitness (log2 ratio) -1 0 1at 161.391 kb on + strand, within HP15_166at 161.407 kb on - strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.573 kb on - strand, within HP15_166at 161.573 kb on - strand, within HP15_166at 161.573 kb on - strand, within HP15_166at 161.776 kb on + strand, within HP15_166at 161.779 kb on - strand, within HP15_166at 161.814 kb on - strand, within HP15_166at 161.814 kb on - strand, within HP15_166at 161.833 kb on + strand, within HP15_166at 161.887 kb on + strand, within HP15_166at 161.933 kb on + strand, within HP15_166at 161.997 kb on + strand, within HP15_166at 161.997 kb on + strand, within HP15_166at 162.005 kb on - strand, within HP15_166at 162.038 kb on - strandat 162.080 kb on - strandat 162.082 kb on + strandat 162.082 kb on + strandat 162.183 kb on - strandat 162.239 kb on + strandat 162.307 kb on + strandat 162.344 kb on + strandat 162.344 kb on + strandat 162.410 kb on + strandat 162.410 kb on + strandat 162.458 kb on - strand, within HP15_167at 162.475 kb on - strand, within HP15_167at 162.564 kb on + strand, within HP15_167at 162.564 kb on + strand, within HP15_167at 162.621 kb on - strand, within HP15_167at 162.682 kb on - strand, within HP15_167at 162.682 kb on - strand, within HP15_167at 162.838 kb on + strandat 162.838 kb on + strandat 162.846 kb on - strandat 162.925 kb on + strandat 162.925 kb on + strandat 162.925 kb on + strandat 162.925 kb on + strandat 162.925 kb on + strandat 162.933 kb on - strandat 162.967 kb on - strandat 162.987 kb on + strandat 163.301 kb on - strandat 163.327 kb on + strandat 163.327 kb on + strandat 163.327 kb on + strandat 163.334 kb on + strandat 163.334 kb on + strandat 163.335 kb on - strandat 163.335 kb on - strandat 163.335 kb on - strandat 163.342 kb on - strandat 163.352 kb on - strandat 163.459 kb on + strand, within HP15_168at 163.460 kb on + strand, within HP15_168at 163.471 kb on + strand, within HP15_168at 163.471 kb on + strand, within HP15_168at 163.471 kb on + strand, within HP15_168at 163.478 kb on + strand, within HP15_168at 163.478 kb on - strand, within HP15_168at 163.508 kb on + strandat 163.516 kb on - strandat 163.562 kb on + strandat 163.562 kb on + strandat 163.562 kb on + strandat 163.570 kb on - strandat 163.570 kb on - strandat 163.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
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161,391 + HP15_166 0.21 -0.3
161,407 - HP15_166 0.22 +0.5
161,565 + HP15_166 0.40 -0.2
161,565 + HP15_166 0.40 -0.1
161,565 + HP15_166 0.40 +0.6
161,565 + HP15_166 0.40 +0.7
161,565 + HP15_166 0.40 -1.7
161,573 - HP15_166 0.41 +1.1
161,573 - HP15_166 0.41 -0.6
161,573 - HP15_166 0.41 +1.3
161,776 + HP15_166 0.63 +0.1
161,779 - HP15_166 0.64 +0.8
161,814 - HP15_166 0.68 +1.1
161,814 - HP15_166 0.68 -0.1
161,833 + HP15_166 0.70 +0.9
161,887 + HP15_166 0.76 -0.1
161,933 + HP15_166 0.81 +1.7
161,997 + HP15_166 0.88 +0.3
161,997 + HP15_166 0.88 +0.4
162,005 - HP15_166 0.89 -0.2
162,038 - +0.8
162,080 - -0.3
162,082 + -0.1
162,082 + +1.1
162,183 - +0.2
162,239 + +0.6
162,307 + -0.4
162,344 + -0.0
162,344 + +0.2
162,410 + +1.2
162,410 + -0.0
162,458 - HP15_167 0.23 -0.3
162,475 - HP15_167 0.27 -0.3
162,564 + HP15_167 0.52 -0.2
162,564 + HP15_167 0.52 -0.5
162,621 - HP15_167 0.68 +0.3
162,682 - HP15_167 0.85 -0.6
162,682 - HP15_167 0.85 -1.7
162,838 + -0.1
162,838 + +0.1
162,846 - +0.2
162,925 + -1.1
162,925 + +0.5
162,925 + +0.5
162,925 + -0.3
162,925 + +0.7
162,933 - +1.3
162,967 - -0.0
162,987 + +0.0
163,301 - +0.6
163,327 + -0.2
163,327 + -0.2
163,327 + +0.7
163,334 + -0.1
163,334 + -0.1
163,335 - -0.2
163,335 - -0.8
163,335 - -1.1
163,342 - -0.4
163,352 - -1.0
163,459 + HP15_168 0.48 +1.5
163,460 + HP15_168 0.49 +0.3
163,471 + HP15_168 0.59 +0.5
163,471 + HP15_168 0.59 -0.6
163,471 + HP15_168 0.59 -0.2
163,478 + HP15_168 0.66 +0.0
163,478 - HP15_168 0.66 +0.0
163,508 + +1.3
163,516 - -0.9
163,562 + -0.3
163,562 + +0.8
163,562 + -0.0
163,570 - +0.6
163,570 - +0.5
163,606 + +0.1

Or see this region's nucleotide sequence