Experiment: Neomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0850 and Psest_0851 are separated by 72 nucleotides Psest_0851 and Psest_0852 are separated by 171 nucleotides
Psest_0850: Psest_0850 - glucokinase, proteobacterial type, at 920,458 to 921,417
_0850
Psest_0851: Psest_0851 - Transcriptional regulators, at 921,490 to 922,359
_0851
Psest_0852: Psest_0852 - glucose-6-phosphate 1-dehydrogenase, at 922,531 to 924,000
_0852
Position (kb) 921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2 at 920.587 kb on + strand, within Psest_0850 at 920.590 kb on + strand, within Psest_0850 at 920.590 kb on + strand, within Psest_0850 at 920.590 kb on + strand, within Psest_0850 at 920.590 kb on + strand, within Psest_0850 at 920.590 kb on + strand, within Psest_0850 at 920.591 kb on - strand, within Psest_0850 at 920.778 kb on + strand, within Psest_0850 at 920.778 kb on + strand, within Psest_0850 at 921.055 kb on + strand, within Psest_0850 at 921.055 kb on + strand, within Psest_0850 at 921.060 kb on + strand, within Psest_0850 at 921.060 kb on + strand, within Psest_0850 at 921.060 kb on + strand, within Psest_0850 at 921.061 kb on - strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.232 kb on + strand, within Psest_0850 at 921.233 kb on - strand, within Psest_0850 at 921.233 kb on - strand, within Psest_0850 at 921.233 kb on - strand, within Psest_0850 at 921.233 kb on - strand, within Psest_0850 at 921.233 kb on - strand, within Psest_0850 at 921.233 kb on - strand, within Psest_0850 at 921.233 kb on - strand, within Psest_0850 at 921.453 kb on + strand at 921.455 kb on + strand at 921.455 kb on + strand at 921.455 kb on + strand at 921.455 kb on + strand at 921.455 kb on + strand at 921.456 kb on - strand at 921.456 kb on - strand at 921.542 kb on - strand at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.797 kb on + strand, within Psest_0851 at 922.067 kb on + strand, within Psest_0851 at 922.067 kb on + strand, within Psest_0851 at 922.068 kb on - strand, within Psest_0851 at 922.068 kb on - strand, within Psest_0851 at 922.348 kb on + strand at 922.399 kb on + strand at 922.399 kb on + strand at 922.399 kb on + strand at 922.542 kb on - strand at 922.542 kb on - strand at 922.618 kb on + strand at 922.619 kb on - strand at 922.793 kb on - strand, within Psest_0852 at 922.897 kb on + strand, within Psest_0852 at 923.041 kb on + strand, within Psest_0852 at 923.041 kb on + strand, within Psest_0852 at 923.056 kb on + strand, within Psest_0852
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml remove 920,587 + Psest_0850 0.13 -0.9 920,590 + Psest_0850 0.14 +0.3 920,590 + Psest_0850 0.14 -0.7 920,590 + Psest_0850 0.14 -1.4 920,590 + Psest_0850 0.14 +0.3 920,590 + Psest_0850 0.14 +0.3 920,591 - Psest_0850 0.14 +1.4 920,778 + Psest_0850 0.33 +0.5 920,778 + Psest_0850 0.33 -0.4 921,055 + Psest_0850 0.62 +0.2 921,055 + Psest_0850 0.62 -0.5 921,060 + Psest_0850 0.63 +0.2 921,060 + Psest_0850 0.63 -1.4 921,060 + Psest_0850 0.63 +2.2 921,061 - Psest_0850 0.63 +0.4 921,232 + Psest_0850 0.81 +0.2 921,232 + Psest_0850 0.81 +0.6 921,232 + Psest_0850 0.81 -0.4 921,232 + Psest_0850 0.81 +0.8 921,232 + Psest_0850 0.81 -1.0 921,232 + Psest_0850 0.81 -0.4 921,232 + Psest_0850 0.81 -2.5 921,232 + Psest_0850 0.81 -0.3 921,232 + Psest_0850 0.81 +1.0 921,232 + Psest_0850 0.81 +0.9 921,232 + Psest_0850 0.81 +0.4 921,232 + Psest_0850 0.81 -0.8 921,232 + Psest_0850 0.81 +0.1 921,233 - Psest_0850 0.81 +2.4 921,233 - Psest_0850 0.81 +0.4 921,233 - Psest_0850 0.81 -0.1 921,233 - Psest_0850 0.81 -0.8 921,233 - Psest_0850 0.81 -0.4 921,233 - Psest_0850 0.81 +0.6 921,233 - Psest_0850 0.81 +1.2 921,453 + +0.2 921,455 + -1.6 921,455 + -0.0 921,455 + +0.2 921,455 + +1.0 921,455 + +0.6 921,456 - -0.1 921,456 - +0.0 921,542 - -0.1 921,647 + Psest_0851 0.18 -0.1 921,647 + Psest_0851 0.18 +0.1 921,647 + Psest_0851 0.18 -0.8 921,647 + Psest_0851 0.18 -0.7 921,647 + Psest_0851 0.18 -0.3 921,647 + Psest_0851 0.18 -0.1 921,647 + Psest_0851 0.18 +1.2 921,647 + Psest_0851 0.18 +0.5 921,647 + Psest_0851 0.18 -1.4 921,647 + Psest_0851 0.18 -1.6 921,647 + Psest_0851 0.18 -0.4 921,647 + Psest_0851 0.18 +0.6 921,647 + Psest_0851 0.18 +1.1 921,647 + Psest_0851 0.18 +0.4 921,647 + Psest_0851 0.18 +1.8 921,647 + Psest_0851 0.18 -0.4 921,647 + Psest_0851 0.18 -1.3 921,647 + Psest_0851 0.18 -0.4 921,647 + Psest_0851 0.18 +0.5 921,647 + Psest_0851 0.18 -0.7 921,647 + Psest_0851 0.18 -0.4 921,647 + Psest_0851 0.18 +1.2 921,648 - Psest_0851 0.18 -0.4 921,648 - Psest_0851 0.18 +0.5 921,648 - Psest_0851 0.18 +0.6 921,648 - Psest_0851 0.18 -2.1 921,648 - Psest_0851 0.18 -0.2 921,648 - Psest_0851 0.18 +0.8 921,648 - Psest_0851 0.18 -0.3 921,648 - Psest_0851 0.18 -0.2 921,648 - Psest_0851 0.18 -0.4 921,648 - Psest_0851 0.18 -0.2 921,648 - Psest_0851 0.18 -0.1 921,648 - Psest_0851 0.18 -1.8 921,648 - Psest_0851 0.18 -0.4 921,648 - Psest_0851 0.18 -0.1 921,648 - Psest_0851 0.18 -0.8 921,648 - Psest_0851 0.18 +1.2 921,648 - Psest_0851 0.18 -0.2 921,648 - Psest_0851 0.18 -0.0 921,648 - Psest_0851 0.18 +0.3 921,648 - Psest_0851 0.18 +0.2 921,797 + Psest_0851 0.35 +0.2 922,067 + Psest_0851 0.66 -0.0 922,067 + Psest_0851 0.66 +0.6 922,068 - Psest_0851 0.66 +1.2 922,068 - Psest_0851 0.66 -0.8 922,348 + +1.5 922,399 + +1.2 922,399 + -1.1 922,399 + +1.0 922,542 - +1.6 922,542 - -0.3 922,618 + +0.6 922,619 - +0.8 922,793 - Psest_0852 0.18 -0.2 922,897 + Psest_0852 0.25 -0.8 923,041 + Psest_0852 0.35 -2.4 923,041 + Psest_0852 0.35 -0.1 923,056 + Psest_0852 0.36 -0.2
Or see this region's nucleotide sequence