Experiment: Neomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0686 and Psest_0687 are separated by 283 nucleotides Psest_0687 and Psest_0688 are separated by 89 nucleotides
Psest_0686: Psest_0686 - Membrane protease subunits, stomatin/prohibitin homologs, at 749,591 to 750,457
_0686
Psest_0687: Psest_0687 - ATP phosphoribosyltransferase, regulatory subunit, at 750,741 to 751,928
_0687
Psest_0688: Psest_0688 - adenylosuccinate synthase, at 752,018 to 753,313
_0688
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.455 kb on + strand at 750.593 kb on + strand at 750.657 kb on + strand at 750.657 kb on + strand at 750.657 kb on + strand at 750.824 kb on + strand at 750.824 kb on + strand at 750.824 kb on + strand at 750.824 kb on + strand at 750.935 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.022 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.373 kb on + strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.374 kb on - strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.378 kb on + strand, within Psest_0687 at 751.530 kb on + strand, within Psest_0687 at 751.530 kb on + strand, within Psest_0687 at 751.530 kb on + strand, within Psest_0687 at 751.557 kb on + strand, within Psest_0687 at 751.568 kb on + strand, within Psest_0687 at 751.568 kb on + strand, within Psest_0687 at 751.588 kb on + strand, within Psest_0687 at 751.588 kb on + strand, within Psest_0687 at 751.632 kb on + strand, within Psest_0687 at 751.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml remove 750,455 + -0.5 750,593 + +0.4 750,657 + -1.5 750,657 + -1.5 750,657 + -1.3 750,824 + -0.6 750,824 + +0.0 750,824 + +0.4 750,824 + +1.9 750,935 + Psest_0687 0.16 -0.8 751,022 + Psest_0687 0.24 -2.9 751,022 + Psest_0687 0.24 +0.7 751,022 + Psest_0687 0.24 -1.3 751,022 + Psest_0687 0.24 +1.0 751,022 + Psest_0687 0.24 -0.9 751,022 + Psest_0687 0.24 -1.3 751,373 + Psest_0687 0.53 -1.7 751,373 + Psest_0687 0.53 +0.2 751,373 + Psest_0687 0.53 -0.3 751,373 + Psest_0687 0.53 -1.1 751,373 + Psest_0687 0.53 -0.8 751,374 - Psest_0687 0.53 -0.1 751,374 - Psest_0687 0.53 -0.2 751,374 - Psest_0687 0.53 +0.3 751,374 - Psest_0687 0.53 -0.0 751,374 - Psest_0687 0.53 +0.6 751,374 - Psest_0687 0.53 +0.6 751,374 - Psest_0687 0.53 -1.4 751,374 - Psest_0687 0.53 +1.0 751,378 + Psest_0687 0.54 +0.4 751,378 + Psest_0687 0.54 -1.7 751,378 + Psest_0687 0.54 -1.4 751,378 + Psest_0687 0.54 -1.4 751,378 + Psest_0687 0.54 -1.6 751,378 + Psest_0687 0.54 -0.9 751,378 + Psest_0687 0.54 -2.0 751,530 + Psest_0687 0.66 -2.3 751,530 + Psest_0687 0.66 -0.4 751,530 + Psest_0687 0.66 -1.0 751,557 + Psest_0687 0.69 -1.4 751,568 + Psest_0687 0.70 +0.0 751,568 + Psest_0687 0.70 -0.5 751,588 + Psest_0687 0.71 -0.6 751,588 + Psest_0687 0.71 -1.1 751,632 + Psest_0687 0.75 -0.4 751,892 + -0.3
Or see this region's nucleotide sequence