Experiment: Neomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0600 and Psest_0601 are separated by 476 nucleotides Psest_0601 and Psest_0602 are separated by 198 nucleotides
Psest_0600: Psest_0600 - copper-(or silver)-translocating P-type ATPase, at 651,354 to 653,717
_0600
Psest_0601: Psest_0601 - hypothetical protein, at 654,194 to 654,316
_0601
Psest_0602: Psest_0602 - hypothetical protein, at 654,515 to 655,561
_0602
Position (kb) 654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 653.287 kb on - strand, within Psest_0600 at 653.394 kb on - strand, within Psest_0600 at 653.446 kb on + strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.447 kb on - strand, within Psest_0600 at 653.492 kb on + strand at 653.492 kb on + strand at 653.492 kb on + strand at 653.492 kb on + strand at 653.493 kb on - strand at 653.536 kb on + strand at 653.590 kb on + strand at 653.590 kb on + strand at 653.591 kb on - strand at 653.605 kb on + strand at 653.673 kb on - strand at 653.673 kb on - strand at 653.717 kb on + strand at 653.717 kb on + strand at 653.730 kb on - strand at 653.758 kb on - strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.808 kb on + strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.809 kb on - strand at 653.810 kb on + strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.811 kb on - strand at 653.840 kb on + strand at 653.847 kb on + strand at 653.847 kb on + strand at 653.847 kb on + strand at 653.848 kb on - strand at 653.848 kb on - strand at 653.848 kb on - strand at 653.870 kb on + strand at 653.870 kb on + strand at 653.882 kb on + strand at 653.882 kb on + strand at 653.882 kb on + strand at 653.882 kb on + strand at 653.883 kb on - strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.886 kb on + strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.887 kb on - strand at 653.913 kb on - strand at 653.913 kb on - strand at 653.925 kb on + strand at 653.940 kb on + strand at 653.945 kb on + strand at 653.946 kb on - strand at 653.946 kb on - strand at 653.946 kb on - strand at 653.946 kb on - strand at 653.946 kb on - strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.019 kb on - strand at 654.034 kb on - strand at 654.062 kb on - strand at 654.068 kb on + strand at 654.079 kb on + strand at 654.191 kb on + strand at 654.191 kb on + strand at 654.195 kb on + strand at 654.195 kb on + strand at 654.195 kb on + strand at 654.196 kb on - strand at 654.196 kb on - strand at 654.197 kb on + strand at 654.198 kb on - strand at 654.215 kb on + strand, within Psest_0601 at 654.232 kb on + strand, within Psest_0601 at 654.232 kb on + strand, within Psest_0601 at 654.232 kb on + strand, within Psest_0601 at 654.406 kb on + strand at 654.406 kb on + strand at 654.407 kb on - strand at 654.407 kb on - strand at 654.460 kb on + strand at 654.474 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.594 kb on + strand at 654.594 kb on + strand at 654.595 kb on - strand at 654.595 kb on - strand at 654.619 kb on + strand at 654.754 kb on + strand, within Psest_0602 at 654.774 kb on + strand, within Psest_0602 at 654.775 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.807 kb on + strand, within Psest_0602 at 654.857 kb on + strand, within Psest_0602 at 654.871 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.875 kb on - strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.990 kb on - strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.084 kb on + strand, within Psest_0602 at 655.101 kb on + strand, within Psest_0602 at 655.102 kb on - strand, within Psest_0602 at 655.114 kb on - strand, within Psest_0602 at 655.203 kb on - strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml remove 653,287 - Psest_0600 0.82 +0.4 653,394 - Psest_0600 0.86 -0.4 653,446 + Psest_0600 0.88 -0.5 653,447 - Psest_0600 0.89 +0.1 653,447 - Psest_0600 0.89 -0.2 653,447 - Psest_0600 0.89 -0.3 653,447 - Psest_0600 0.89 -0.2 653,447 - Psest_0600 0.89 -0.1 653,447 - Psest_0600 0.89 -0.7 653,447 - Psest_0600 0.89 -0.8 653,447 - Psest_0600 0.89 -0.4 653,447 - Psest_0600 0.89 -0.7 653,447 - Psest_0600 0.89 -0.3 653,447 - Psest_0600 0.89 -0.3 653,447 - Psest_0600 0.89 -0.3 653,447 - Psest_0600 0.89 +0.2 653,447 - Psest_0600 0.89 -0.7 653,447 - Psest_0600 0.89 -0.6 653,447 - Psest_0600 0.89 -0.3 653,447 - Psest_0600 0.89 -0.3 653,447 - Psest_0600 0.89 +0.1 653,447 - Psest_0600 0.89 -0.4 653,447 - Psest_0600 0.89 -1.7 653,447 - Psest_0600 0.89 +0.2 653,492 + -0.8 653,492 + -0.4 653,492 + -0.8 653,492 + +0.5 653,493 - -0.0 653,536 + +1.1 653,590 + +0.2 653,590 + +0.8 653,591 - +0.0 653,605 + +0.3 653,673 - +0.0 653,673 - -0.7 653,717 + +0.2 653,717 + -0.8 653,730 - -0.8 653,758 - -0.3 653,808 + +0.0 653,808 + -0.0 653,808 + -0.3 653,808 + +0.9 653,808 + +0.4 653,808 + +0.3 653,808 + -0.2 653,809 - +0.0 653,809 - -0.5 653,809 - -2.5 653,809 - -0.1 653,809 - +1.1 653,809 - -0.3 653,810 + -1.0 653,811 - -0.5 653,811 - -0.1 653,811 - -0.7 653,811 - -0.2 653,811 - +0.6 653,811 - +0.4 653,811 - +0.3 653,840 + +1.2 653,847 + +0.5 653,847 + -0.3 653,847 + -0.3 653,848 - -0.0 653,848 - -0.4 653,848 - +0.0 653,870 + +0.2 653,870 + +1.3 653,882 + -0.1 653,882 + -0.0 653,882 + -0.2 653,882 + -0.2 653,883 - -0.3 653,886 + -0.4 653,886 + +1.3 653,886 + +0.2 653,886 + -0.2 653,886 + +0.9 653,886 + +1.7 653,886 + -0.4 653,886 + +0.1 653,886 + +0.2 653,886 + +0.4 653,886 + +0.5 653,887 - +1.0 653,887 - +0.1 653,887 - +0.7 653,887 - -0.2 653,887 - -0.8 653,887 - -0.0 653,913 - -1.5 653,913 - +0.2 653,925 + -0.3 653,940 + -1.0 653,945 + -0.6 653,946 - -0.2 653,946 - -0.7 653,946 - -0.5 653,946 - -3.0 653,946 - -0.5 654,018 + -0.7 654,018 + -0.8 654,019 - +0.1 654,034 - -0.7 654,062 - +0.4 654,068 + -0.5 654,079 + +0.1 654,191 + -0.2 654,191 + -0.6 654,195 + +0.0 654,195 + -1.3 654,195 + -1.3 654,196 - -1.0 654,196 - -1.8 654,197 + +0.8 654,198 - -2.2 654,215 + Psest_0601 0.17 -0.9 654,232 + Psest_0601 0.31 -0.6 654,232 + Psest_0601 0.31 -0.6 654,232 + Psest_0601 0.31 -0.8 654,406 + -0.3 654,406 + -1.0 654,407 - +0.1 654,407 - -0.3 654,460 + -0.6 654,474 + -0.8 654,534 - -1.0 654,534 - -0.1 654,534 - +0.1 654,594 + +0.7 654,594 + -0.8 654,595 - -0.6 654,595 - +1.0 654,619 + -0.6 654,754 + Psest_0602 0.23 -0.4 654,774 + Psest_0602 0.25 +0.6 654,775 - Psest_0602 0.25 -0.2 654,794 - Psest_0602 0.27 -0.2 654,794 - Psest_0602 0.27 -1.9 654,794 - Psest_0602 0.27 -1.7 654,807 + Psest_0602 0.28 +0.1 654,857 + Psest_0602 0.33 -0.3 654,871 + Psest_0602 0.34 -0.8 654,874 + Psest_0602 0.34 -0.0 654,874 + Psest_0602 0.34 -0.6 654,875 - Psest_0602 0.34 -0.9 654,981 + Psest_0602 0.45 -0.3 654,981 + Psest_0602 0.45 -0.8 654,981 + Psest_0602 0.45 -0.3 654,989 + Psest_0602 0.45 -0.3 654,989 + Psest_0602 0.45 -0.2 654,990 - Psest_0602 0.45 -0.0 655,038 + Psest_0602 0.50 -0.1 655,038 + Psest_0602 0.50 +0.4 655,038 + Psest_0602 0.50 -0.8 655,038 + Psest_0602 0.50 -1.4 655,038 + Psest_0602 0.50 -0.6 655,039 - Psest_0602 0.50 -0.7 655,039 - Psest_0602 0.50 -0.9 655,084 + Psest_0602 0.54 -0.0 655,101 + Psest_0602 0.56 -0.7 655,102 - Psest_0602 0.56 -0.8 655,114 - Psest_0602 0.57 +0.6 655,203 - Psest_0602 0.66 -0.9 655,279 + Psest_0602 0.73 -1.0 655,279 + Psest_0602 0.73 +0.0
Or see this region's nucleotide sequence