Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3840 and HP15_3841 are separated by 147 nucleotides HP15_3841 and HP15_3842 are separated by 7 nucleotides
HP15_3840: HP15_3840 - metallophosphoesterase, at 4,065,636 to 4,066,487
_3840
HP15_3841: HP15_3841 - iron(III) ABC transporter permease protein, at 4,066,635 to 4,068,347
_3841
HP15_3842: HP15_3842 - iron(III) ABC transporter, ATP-binding protein, at 4,068,355 to 4,069,470
_3842
Position (kb)
4066
4067
4068
4069 Strain fitness (log2 ratio)
-2
-1
0
1 at 4065.863 kb on - strand, within HP15_3840 at 4065.922 kb on + strand, within HP15_3840 at 4065.942 kb on + strand, within HP15_3840 at 4065.950 kb on - strand, within HP15_3840 at 4065.955 kb on + strand, within HP15_3840 at 4065.980 kb on + strand, within HP15_3840 at 4066.105 kb on - strand, within HP15_3840 at 4066.147 kb on - strand, within HP15_3840 at 4066.188 kb on + strand, within HP15_3840 at 4066.198 kb on - strand, within HP15_3840 at 4066.221 kb on + strand, within HP15_3840 at 4066.242 kb on - strand, within HP15_3840 at 4066.297 kb on + strand, within HP15_3840 at 4066.305 kb on - strand, within HP15_3840 at 4066.382 kb on - strand, within HP15_3840 at 4066.420 kb on - strand at 4066.435 kb on + strand at 4066.448 kb on - strand at 4066.453 kb on - strand at 4066.486 kb on + strand at 4066.486 kb on + strand at 4066.494 kb on - strand at 4066.494 kb on - strand at 4066.494 kb on - strand at 4066.561 kb on - strand at 4066.595 kb on + strand at 4066.603 kb on - strand at 4066.603 kb on - strand at 4066.603 kb on - strand at 4066.704 kb on - strand at 4066.861 kb on + strand, within HP15_3841 at 4066.899 kb on + strand, within HP15_3841 at 4066.914 kb on + strand, within HP15_3841 at 4066.992 kb on + strand, within HP15_3841 at 4067.077 kb on + strand, within HP15_3841 at 4067.133 kb on - strand, within HP15_3841 at 4067.151 kb on + strand, within HP15_3841 at 4067.161 kb on + strand, within HP15_3841 at 4067.161 kb on + strand, within HP15_3841 at 4067.333 kb on + strand, within HP15_3841 at 4067.343 kb on + strand, within HP15_3841 at 4067.356 kb on - strand, within HP15_3841 at 4067.364 kb on + strand, within HP15_3841 at 4067.400 kb on - strand, within HP15_3841 at 4067.516 kb on + strand, within HP15_3841 at 4067.516 kb on + strand, within HP15_3841 at 4067.524 kb on - strand, within HP15_3841 at 4067.555 kb on + strand, within HP15_3841 at 4067.615 kb on - strand, within HP15_3841 at 4067.869 kb on - strand, within HP15_3841 at 4067.869 kb on - strand, within HP15_3841 at 4067.941 kb on + strand, within HP15_3841 at 4067.959 kb on - strand, within HP15_3841 at 4067.959 kb on - strand, within HP15_3841 at 4068.005 kb on - strand, within HP15_3841 at 4068.017 kb on + strand, within HP15_3841 at 4068.018 kb on + strand, within HP15_3841 at 4068.112 kb on - strand, within HP15_3841 at 4068.140 kb on - strand, within HP15_3841 at 4068.257 kb on - strand at 4068.520 kb on + strand, within HP15_3842 at 4068.528 kb on - strand, within HP15_3842 at 4068.608 kb on + strand, within HP15_3842 at 4068.632 kb on + strand, within HP15_3842 at 4068.667 kb on + strand, within HP15_3842 at 4068.670 kb on + strand, within HP15_3842 at 4068.675 kb on - strand, within HP15_3842 at 4068.675 kb on - strand, within HP15_3842 at 4068.675 kb on - strand, within HP15_3842 at 4068.689 kb on + strand, within HP15_3842 at 4068.697 kb on - strand, within HP15_3842 at 4068.745 kb on + strand, within HP15_3842 at 4068.779 kb on + strand, within HP15_3842 at 4068.837 kb on + strand, within HP15_3842 at 4068.856 kb on - strand, within HP15_3842 at 4068.884 kb on - strand, within HP15_3842 at 4068.970 kb on + strand, within HP15_3842 at 4068.970 kb on + strand, within HP15_3842 at 4068.983 kb on - strand, within HP15_3842 at 4069.056 kb on - strand, within HP15_3842 at 4069.056 kb on - strand, within HP15_3842 at 4069.106 kb on + strand, within HP15_3842 at 4069.117 kb on + strand, within HP15_3842 at 4069.209 kb on - strand, within HP15_3842 at 4069.220 kb on - strand, within HP15_3842
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 4,065,863 - HP15_3840 0.27 +0.5 4,065,922 + HP15_3840 0.34 +0.9 4,065,942 + HP15_3840 0.36 +0.6 4,065,950 - HP15_3840 0.37 -0.6 4,065,955 + HP15_3840 0.37 -0.1 4,065,980 + HP15_3840 0.40 -0.4 4,066,105 - HP15_3840 0.55 -0.0 4,066,147 - HP15_3840 0.60 +0.1 4,066,188 + HP15_3840 0.65 +0.1 4,066,198 - HP15_3840 0.66 -0.2 4,066,221 + HP15_3840 0.69 +0.1 4,066,242 - HP15_3840 0.71 -0.2 4,066,297 + HP15_3840 0.78 +0.3 4,066,305 - HP15_3840 0.79 +0.3 4,066,382 - HP15_3840 0.88 +0.2 4,066,420 - +0.1 4,066,435 + +1.0 4,066,448 - +0.6 4,066,453 - +0.4 4,066,486 + +0.6 4,066,486 + -0.2 4,066,494 - -0.4 4,066,494 - +1.2 4,066,494 - +0.5 4,066,561 - +1.0 4,066,595 + -0.2 4,066,603 - -0.8 4,066,603 - -0.6 4,066,603 - -0.6 4,066,704 - -0.6 4,066,861 + HP15_3841 0.13 -1.1 4,066,899 + HP15_3841 0.15 +0.3 4,066,914 + HP15_3841 0.16 -0.1 4,066,992 + HP15_3841 0.21 -0.3 4,067,077 + HP15_3841 0.26 -0.8 4,067,133 - HP15_3841 0.29 -0.1 4,067,151 + HP15_3841 0.30 +0.2 4,067,161 + HP15_3841 0.31 +1.1 4,067,161 + HP15_3841 0.31 -0.5 4,067,333 + HP15_3841 0.41 +0.5 4,067,343 + HP15_3841 0.41 -0.4 4,067,356 - HP15_3841 0.42 +1.6 4,067,364 + HP15_3841 0.43 -1.0 4,067,400 - HP15_3841 0.45 -0.8 4,067,516 + HP15_3841 0.51 -0.5 4,067,516 + HP15_3841 0.51 -0.1 4,067,524 - HP15_3841 0.52 -1.5 4,067,555 + HP15_3841 0.54 -0.3 4,067,615 - HP15_3841 0.57 -1.0 4,067,869 - HP15_3841 0.72 -0.8 4,067,869 - HP15_3841 0.72 -0.9 4,067,941 + HP15_3841 0.76 +0.4 4,067,959 - HP15_3841 0.77 -0.6 4,067,959 - HP15_3841 0.77 -0.4 4,068,005 - HP15_3841 0.80 -0.6 4,068,017 + HP15_3841 0.81 -0.4 4,068,018 + HP15_3841 0.81 -0.7 4,068,112 - HP15_3841 0.86 -2.5 4,068,140 - HP15_3841 0.88 -1.1 4,068,257 - +0.3 4,068,520 + HP15_3842 0.15 -0.5 4,068,528 - HP15_3842 0.16 -0.4 4,068,608 + HP15_3842 0.23 -0.1 4,068,632 + HP15_3842 0.25 +0.1 4,068,667 + HP15_3842 0.28 +0.2 4,068,670 + HP15_3842 0.28 -0.9 4,068,675 - HP15_3842 0.29 -0.1 4,068,675 - HP15_3842 0.29 -0.2 4,068,675 - HP15_3842 0.29 -0.9 4,068,689 + HP15_3842 0.30 +0.9 4,068,697 - HP15_3842 0.31 -0.2 4,068,745 + HP15_3842 0.35 -0.8 4,068,779 + HP15_3842 0.38 -0.1 4,068,837 + HP15_3842 0.43 +0.0 4,068,856 - HP15_3842 0.45 -0.2 4,068,884 - HP15_3842 0.47 -0.4 4,068,970 + HP15_3842 0.55 +0.2 4,068,970 + HP15_3842 0.55 -0.2 4,068,983 - HP15_3842 0.56 +0.2 4,069,056 - HP15_3842 0.63 -0.5 4,069,056 - HP15_3842 0.63 -0.1 4,069,106 + HP15_3842 0.67 +0.8 4,069,117 + HP15_3842 0.68 -0.2 4,069,209 - HP15_3842 0.77 -0.1 4,069,220 - HP15_3842 0.78 -0.1
Or see this region's nucleotide sequence