Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3744

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
3,914,217	+				-0.1
3,914,217	+				-0.6
3,914,277	+				-0.1
3,914,277	+				-0.3
3,914,277	+				-2.6
3,914,280	+				+0.0
3,914,280	+				-0.4
3,914,281	-				-1.1
3,914,281	-				-1.3
3,914,281	-				-0.3
3,914,360	+				-0.3
3,914,546	-		Psest_3743	0.42	+0.9
3,914,615	-		Psest_3743	0.57	-0.2
3,914,641	+		Psest_3743	0.62	+0.2
3,914,641	+		Psest_3743	0.62	-1.0
3,914,642	-		Psest_3743	0.63	-0.9
3,914,642	-		Psest_3743	0.63	-0.1
3,914,653	+		Psest_3743	0.65	+0.8
3,914,766	+		Psest_3743	0.89	+0.7
3,914,766	+		Psest_3743	0.89	-0.3
3,914,766	+		Psest_3743	0.89	+0.3
3,914,766	+		Psest_3743	0.89	+0.5
3,914,766	+		Psest_3743	0.89	-0.7
3,914,767	-		Psest_3743	0.89	-0.4
3,914,772	+				-0.2
3,914,772	+				-0.4
3,914,772	+				-0.8
3,914,772	+				+0.8
3,914,772	+				-0.2
3,914,772	+				+0.3
3,914,772	+				+0.5
3,914,773	-				+0.1
3,914,773	-				-0.1
3,914,773	-				+1.8
3,914,773	-				+1.3
3,914,773	-				+0.2
3,914,773	-				-1.3
3,914,773	-				-0.4
3,914,773	-				-0.1
3,914,834	-				+0.0
3,914,849	-				-0.6
3,914,940	+				+2.3
3,914,940	+				+0.7
3,914,941	-				-0.4
3,915,063	-				-0.4
3,915,246	+		Psest_3744	0.35	-1.9
3,915,246	+		Psest_3744	0.35	-0.7
3,915,247	-		Psest_3744	0.35	-0.6
3,915,247	-		Psest_3744	0.35	-1.8
3,915,247	-		Psest_3744	0.35	-0.3
3,915,247	-		Psest_3744	0.35	+0.2
3,915,247	-		Psest_3744	0.35	-0.6
3,915,247	-		Psest_3744	0.35	-0.9
3,915,341	+		Psest_3744	0.54	-0.8
3,915,360	+		Psest_3744	0.58	-0.9
3,915,360	+		Psest_3744	0.58	-2.2
3,915,361	-		Psest_3744	0.58	-1.3
3,915,361	-		Psest_3744	0.58	-1.6
3,915,361	-		Psest_3744	0.58	-2.3
3,915,489	+		Psest_3744	0.84	-0.8
3,915,489	+		Psest_3744	0.84	-1.3
3,915,490	-		Psest_3744	0.85	-0.7
3,915,490	-		Psest_3744	0.85	+0.3
3,915,490	-		Psest_3744	0.85	-0.9
3,915,490	-		Psest_3744	0.85	-0.2
3,915,490	-		Psest_3744	0.85	-0.8
3,915,594	+				+0.7
3,915,595	-				-0.3
3,915,620	+				+0.5
3,915,620	+				-0.5
3,915,621	-				+0.7
3,916,311	+		Psest_3745	0.51	-0.3
3,916,311	+		Psest_3745	0.51	+0.4
3,916,311	+		Psest_3745	0.51	+0.2
3,916,312	-		Psest_3745	0.52	+0.8
3,916,312	-		Psest_3745	0.52	-0.8
3,916,330	+		Psest_3745	0.53	-0.8
3,916,331	-		Psest_3745	0.53	+0.7
3,916,331	-		Psest_3745	0.53	-1.2
3,916,339	-		Psest_3745	0.54	-0.1
3,916,395	+		Psest_3745	0.58	-0.2
3,916,395	+		Psest_3745	0.58	-0.1
3,916,395	+		Psest_3745	0.58	-2.5
3,916,540	-		Psest_3745	0.70	-1.3