Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3342 and HP15_3343 are separated by 173 nucleotides HP15_3343 and HP15_3344 are separated by 89 nucleotides
HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527
_3342
HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967
_3343
HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616
_3344
Position (kb)
3504
3505 Strain fitness (log2 ratio)
-1
0
1 at 3504.523 kb on + strand at 3504.530 kb on - strand at 3504.645 kb on + strand at 3504.696 kb on - strand at 3504.894 kb on + strand, within HP15_3343 at 3504.989 kb on + strand at 3504.989 kb on + strand at 3505.121 kb on - strand at 3505.208 kb on + strand at 3505.208 kb on + strand at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.343 kb on + strand, within HP15_3344 at 3505.432 kb on + strand, within HP15_3344 at 3505.457 kb on + strand, within HP15_3344 at 3505.490 kb on + strand, within HP15_3344 at 3505.504 kb on + strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.548 kb on + strand, within HP15_3344 at 3505.575 kb on + strand, within HP15_3344 at 3505.589 kb on - strand, within HP15_3344 at 3505.674 kb on + strand, within HP15_3344 at 3505.712 kb on + strand, within HP15_3344 at 3505.747 kb on + strand, within HP15_3344 at 3505.817 kb on - strand, within HP15_3344 at 3505.898 kb on + strand, within HP15_3344
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 3,504,523 + +0.1 3,504,530 - +0.4 3,504,645 + +0.5 3,504,696 - +0.5 3,504,894 + HP15_3343 0.72 -0.4 3,504,989 + -0.2 3,504,989 + -0.5 3,505,121 - +0.4 3,505,208 + +0.3 3,505,208 + -0.4 3,505,216 - HP15_3344 0.10 +0.2 3,505,216 - HP15_3344 0.10 +0.8 3,505,216 - HP15_3344 0.10 -0.2 3,505,343 + HP15_3344 0.18 -0.4 3,505,432 + HP15_3344 0.24 -0.4 3,505,457 + HP15_3344 0.26 +0.3 3,505,490 + HP15_3344 0.28 +0.2 3,505,504 + HP15_3344 0.29 +0.9 3,505,507 - HP15_3344 0.29 +1.2 3,505,507 - HP15_3344 0.29 -0.2 3,505,548 + HP15_3344 0.31 -0.7 3,505,575 + HP15_3344 0.33 +0.1 3,505,589 - HP15_3344 0.34 +0.2 3,505,674 + HP15_3344 0.40 +1.5 3,505,712 + HP15_3344 0.42 -0.2 3,505,747 + HP15_3344 0.44 -0.2 3,505,817 - HP15_3344 0.49 -0.1 3,505,898 + HP15_3344 0.54 +1.5
Or see this region's nucleotide sequence