Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0299

Experiment: Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0297 and Psest_0298 are separated by 43 nucleotidesPsest_0298 and Psest_0299 are separated by 41 nucleotidesPsest_0299 and Psest_0300 are separated by 76 nucleotides Psest_0297: Psest_0297 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,329 to 311,736 _0297 Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145 _0298 Psest_0299: Psest_0299 - Chemotaxis signal transduction protein, at 312,187 to 312,723 _0299 Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848 _0300 Position (kb) 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 311.206 kb on + strandat 311.229 kb on + strandat 311.229 kb on + strandat 311.230 kb on - strandat 311.288 kb on + strandat 311.289 kb on - strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.300 kb on - strandat 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.418 kb on - strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.768 kb on + strandat 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.926 kb on - strand, within Psest_0298at 312.080 kb on + strand, within Psest_0298at 312.081 kb on - strand, within Psest_0298at 312.232 kb on - strandat 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.707 kb on + strandat 312.708 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.811 kb on - strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.818 kb on - strandat 312.825 kb on + strandat 312.891 kb on + strandat 312.891 kb on + strandat 312.892 kb on - strandat 312.892 kb on - strandat 312.914 kb on + strandat 312.915 kb on - strandat 312.923 kb on - strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.975 kb on + strandat 312.976 kb on - strandat 312.976 kb on - strandat 313.083 kb on - strand, within Psest_0300at 313.186 kb on + strand, within Psest_0300at 313.218 kb on + strand, within Psest_0300at 313.218 kb on + strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.243 kb on + strand, within Psest_0300at 313.244 kb on - strand, within Psest_0300at 313.244 kb on - strand, within Psest_0300at 313.369 kb on + strand, within Psest_0300at 313.369 kb on + strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.383 kb on + strand, within Psest_0300at 313.429 kb on + strand, within Psest_0300at 313.430 kb on - strand, within Psest_0300at 313.465 kb on - strand, within Psest_0300at 313.569 kb on + strand, within Psest_0300at 313.570 kb on - strand, within Psest_0300at 313.570 kb on - strand, within Psest_0300at 313.639 kb on + strand, within Psest_0300at 313.639 kb on + strand, within Psest_0300at 313.639 kb on + strand, within Psest_0300at 313.640 kb on - strand, within Psest_0300at 313.640 kb on - strand, within Psest_0300

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Per-strain Table

Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml
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311,206 + -0.3
311,229 + -0.1
311,229 + -0.5
311,230 - -0.8
311,288 + -1.1
311,289 - +1.1
311,299 + +0.2
311,299 + -0.5
311,299 + -0.6
311,299 + -1.3
311,300 - -0.4
311,417 + Psest_0297 0.22 +1.2
311,417 + Psest_0297 0.22 +0.6
311,417 + Psest_0297 0.22 -0.3
311,417 + Psest_0297 0.22 -0.0
311,417 + Psest_0297 0.22 +0.9
311,418 - Psest_0297 0.22 -0.1
311,505 + Psest_0297 0.43 -1.1
311,505 + Psest_0297 0.43 -0.1
311,505 + Psest_0297 0.43 -0.8
311,505 + Psest_0297 0.43 -0.2
311,506 - Psest_0297 0.43 -0.1
311,506 - Psest_0297 0.43 -0.2
311,629 - Psest_0297 0.74 +1.3
311,629 - Psest_0297 0.74 +1.0
311,768 + +0.0
311,822 + Psest_0298 0.11 +0.3
311,822 + Psest_0298 0.11 +1.1
311,822 + Psest_0298 0.11 -0.9
311,822 + Psest_0298 0.11 +0.8
311,822 + Psest_0298 0.11 +0.2
311,822 + Psest_0298 0.11 +1.2
311,822 + Psest_0298 0.11 +1.6
311,822 + Psest_0298 0.11 +1.4
311,823 - Psest_0298 0.12 -0.4
311,823 - Psest_0298 0.12 -2.3
311,823 - Psest_0298 0.12 -0.0
311,823 - Psest_0298 0.12 +0.5
311,926 - Psest_0298 0.40 +0.2
312,080 + Psest_0298 0.82 +0.8
312,081 - Psest_0298 0.82 -0.3
312,232 - -0.7
312,630 + Psest_0299 0.82 -1.8
312,630 + Psest_0299 0.82 -0.4
312,630 + Psest_0299 0.82 +0.3
312,630 + Psest_0299 0.82 -0.5
312,630 + Psest_0299 0.82 -0.0
312,630 + Psest_0299 0.82 +2.2
312,630 + Psest_0299 0.82 -1.1
312,630 + Psest_0299 0.82 -0.4
312,630 + Psest_0299 0.82 +0.5
312,631 - Psest_0299 0.83 -0.8
312,631 - Psest_0299 0.83 +1.1
312,707 + -0.8
312,708 - -0.3
312,722 - -0.0
312,722 - -0.4
312,722 - -0.7
312,727 + -0.7
312,727 + +0.1
312,727 + -0.2
312,727 + +0.7
312,727 + -1.0
312,727 + -0.4
312,728 - -0.0
312,728 - -0.0
312,728 - -0.7
312,728 - +0.8
312,728 - -0.7
312,728 - +0.3
312,728 - -2.3
312,728 - +1.3
312,810 + +0.2
312,810 + -1.3
312,810 + +0.8
312,810 + +1.2
312,811 - +0.9
312,817 + +0.1
312,817 + -1.2
312,817 + -0.6
312,818 - -0.1
312,825 + +0.5
312,891 + -0.2
312,891 + +0.6
312,892 - -0.3
312,892 - +0.1
312,914 + +0.2
312,915 - -0.2
312,923 - -0.9
312,947 + -0.2
312,947 + -0.3
312,947 + -0.3
312,947 + -0.6
312,947 + +0.6
312,947 + -0.9
312,948 - -0.4
312,948 - -0.8
312,948 - -0.6
312,948 - +0.3
312,975 + -0.4
312,976 - +1.2
312,976 - -2.7
313,083 - Psest_0300 0.14 -0.0
313,186 + Psest_0300 0.19 +0.6
313,218 + Psest_0300 0.20 -0.1
313,218 + Psest_0300 0.20 +0.2
313,219 - Psest_0300 0.20 +0.0
313,219 - Psest_0300 0.20 -1.3
313,219 - Psest_0300 0.20 +0.5
313,219 - Psest_0300 0.20 -1.2
313,243 + Psest_0300 0.22 -0.2
313,244 - Psest_0300 0.22 +1.9
313,244 - Psest_0300 0.22 +0.1
313,369 + Psest_0300 0.28 -0.1
313,369 + Psest_0300 0.28 -0.0
313,370 - Psest_0300 0.28 -0.2
313,370 - Psest_0300 0.28 -0.3
313,370 - Psest_0300 0.28 +0.1
313,370 - Psest_0300 0.28 +0.3
313,383 + Psest_0300 0.28 -0.5
313,429 + Psest_0300 0.31 -0.5
313,430 - Psest_0300 0.31 +0.4
313,465 - Psest_0300 0.32 +1.4
313,569 + Psest_0300 0.38 -1.4
313,570 - Psest_0300 0.38 -0.9
313,570 - Psest_0300 0.38 -1.3
313,639 + Psest_0300 0.41 -0.2
313,639 + Psest_0300 0.41 +0.2
313,639 + Psest_0300 0.41 +1.2
313,640 - Psest_0300 0.41 -0.3
313,640 - Psest_0300 0.41 +0.1

Or see this region's nucleotide sequence