Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2511 and HP15_2512 are separated by 15 nucleotides HP15_2512 and HP15_2513 are separated by 7 nucleotides HP15_2513 and HP15_2514 are separated by 90 nucleotides
HP15_2511: HP15_2511 - phosphatidylserine decarboxylase proenzyme, at 2,651,112 to 2,651,966
_2511
HP15_2512: HP15_2512 - tRNA synthetase, class II (D, K and N), at 2,651,982 to 2,652,950
_2512
HP15_2513: HP15_2513 - translation elongation factor P, at 2,652,958 to 2,653,488
_2513
HP15_2514: HP15_2514 - lysine 2,3-aminomutase YodO family protein, at 2,653,579 to 2,654,619
_2514
Position (kb)
2651
2652
2653 Strain fitness (log2 ratio)
-2
-1
0
1 at 2651.031 kb on - strand at 2652.003 kb on + strand at 2652.211 kb on + strand, within HP15_2512 at 2652.225 kb on - strand, within HP15_2512 at 2652.345 kb on - strand, within HP15_2512 at 2652.345 kb on - strand, within HP15_2512 at 2652.437 kb on + strand, within HP15_2512 at 2652.569 kb on + strand, within HP15_2512 at 2652.609 kb on - strand, within HP15_2512 at 2652.676 kb on - strand, within HP15_2512 at 2652.735 kb on + strand, within HP15_2512 at 2652.824 kb on + strand, within HP15_2512 at 2652.953 kb on - strand at 2653.661 kb on + strand at 2653.737 kb on - strand, within HP15_2514 at 2653.793 kb on - strand, within HP15_2514
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 2,651,031 - -0.1 2,652,003 + -0.9 2,652,211 + HP15_2512 0.24 -1.8 2,652,225 - HP15_2512 0.25 -1.3 2,652,345 - HP15_2512 0.37 -1.0 2,652,345 - HP15_2512 0.37 -0.9 2,652,437 + HP15_2512 0.47 -1.3 2,652,569 + HP15_2512 0.61 +0.3 2,652,609 - HP15_2512 0.65 +0.1 2,652,676 - HP15_2512 0.72 +0.8 2,652,735 + HP15_2512 0.78 -0.6 2,652,824 + HP15_2512 0.87 -0.5 2,652,953 - -0.4 2,653,661 + -1.0 2,653,737 - HP15_2514 0.15 -0.9 2,653,793 - HP15_2514 0.21 -0.3
Or see this region's nucleotide sequence