Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2226 and HP15_2227 are separated by 4 nucleotides HP15_2227 and HP15_2228 are separated by 51 nucleotides HP15_2228 and HP15_2229 are separated by 30 nucleotides
HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577
_2226
HP15_2227: HP15_2227 - protein containing type IV pilus assembly PilZ domain, at 2,344,582 to 2,344,872
_2227
HP15_2228: HP15_2228 - ribonuclease activity regulator protein RraA, at 2,344,924 to 2,345,403
_2228
HP15_2229: HP15_2229 - phosphoenolpyruvate synthase, at 2,345,434 to 2,347,806
_2229
Position (kb)
2344
2345
2346 Strain fitness (log2 ratio)
-1
0
1 at 2344.616 kb on + strand, within HP15_2227 at 2344.646 kb on + strand, within HP15_2227 at 2344.679 kb on + strand, within HP15_2227 at 2344.712 kb on + strand, within HP15_2227 at 2344.769 kb on - strand, within HP15_2227 at 2345.019 kb on + strand, within HP15_2228 at 2345.042 kb on - strand, within HP15_2228 at 2345.897 kb on - strand, within HP15_2229 at 2346.128 kb on - strand, within HP15_2229 at 2346.131 kb on + strand, within HP15_2229 at 2346.247 kb on - strand, within HP15_2229
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 2,344,616 + HP15_2227 0.12 +0.4 2,344,646 + HP15_2227 0.22 -0.0 2,344,679 + HP15_2227 0.33 +0.7 2,344,712 + HP15_2227 0.45 -0.3 2,344,769 - HP15_2227 0.64 +1.7 2,345,019 + HP15_2228 0.20 -0.3 2,345,042 - HP15_2228 0.25 -0.5 2,345,897 - HP15_2229 0.20 -0.7 2,346,128 - HP15_2229 0.29 -0.3 2,346,131 + HP15_2229 0.29 -0.4 2,346,247 - HP15_2229 0.34 -0.2
Or see this region's nucleotide sequence