Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1 and HP15_2 are separated by 123 nucleotides HP15_2 and HP15_3 are separated by 29 nucleotides HP15_3 and HP15_4 are separated by 424 nucleotides
HP15_1: HP15_1 - hypothetical protein, at 261 to 1,085
_1
HP15_2: HP15_2 - acyl-CoA dehydrogenase domain protein, at 1,209 to 2,378
_2
HP15_3: HP15_3 - transcriptional Regulator, MerR family protein-like protein, at 2,408 to 2,674
_3
HP15_4: HP15_4 - alcohol dehydrogenase zinc-binding domain protein, at 3,099 to 4,025
_4
Position (kb)
1
2
3 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 0.433 kb on + strand, within HP15_1 at 0.446 kb on - strand, within HP15_1 at 0.479 kb on - strand, within HP15_1 at 0.497 kb on - strand, within HP15_1 at 1.161 kb on + strand at 1.191 kb on - strand at 1.202 kb on - strand at 1.477 kb on + strand, within HP15_2 at 1.658 kb on + strand, within HP15_2 at 2.687 kb on + strand at 2.751 kb on + strand at 2.762 kb on + strand at 2.852 kb on + strand at 2.853 kb on + strand at 2.860 kb on - strand at 3.063 kb on + strand at 3.063 kb on + strand at 3.065 kb on + strand at 3.073 kb on + strand at 3.083 kb on - strand at 3.107 kb on - strand at 3.138 kb on + strand at 3.188 kb on + strand at 3.222 kb on + strand, within HP15_4 at 3.266 kb on + strand, within HP15_4 at 3.274 kb on - strand, within HP15_4 at 3.274 kb on - strand, within HP15_4 at 3.279 kb on - strand, within HP15_4 at 3.350 kb on - strand, within HP15_4 at 3.364 kb on + strand, within HP15_4
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 433 + HP15_1 0.21 -0.2 446 - HP15_1 0.22 -0.0 479 - HP15_1 0.26 -0.0 497 - HP15_1 0.29 +0.6 1,161 + +0.0 1,191 - -1.3 1,202 - +0.2 1,477 + HP15_2 0.23 -0.3 1,658 + HP15_2 0.38 -0.5 2,687 + +0.3 2,751 + -0.0 2,762 + +0.0 2,852 + +0.5 2,853 + -0.2 2,860 - +1.0 3,063 + -0.1 3,063 + +0.6 3,065 + -0.4 3,073 + +0.3 3,083 - +0.3 3,107 - -0.5 3,138 + -0.6 3,188 + +0.7 3,222 + HP15_4 0.13 -0.3 3,266 + HP15_4 0.18 +2.4 3,274 - HP15_4 0.19 +0.7 3,274 - HP15_4 0.19 -0.1 3,279 - HP15_4 0.19 -1.8 3,350 - HP15_4 0.27 +0.4 3,364 + HP15_4 0.29 -0.1
Or see this region's nucleotide sequence