Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1918
Experiment: Neomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Neomycin 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,025,758 | + | Psest_1918 | 0.23 | -1.0 | |
2,025,758 | + | Psest_1918 | 0.23 | -2.3 | |
2,025,758 | + | Psest_1918 | 0.23 | -0.8 | |
2,025,800 | + | Psest_1918 | 0.27 | -0.6 | |
2,025,800 | + | Psest_1918 | 0.27 | +0.0 | |
2,025,800 | + | Psest_1918 | 0.27 | +0.1 | |
2,025,800 | + | Psest_1918 | 0.27 | +0.4 | |
2,025,936 | - | Psest_1918 | 0.41 | -1.4 | |
2,026,123 | + | Psest_1918 | 0.60 | -1.4 | |
2,026,217 | + | Psest_1918 | 0.70 | +1.2 | |
2,026,217 | + | Psest_1918 | 0.70 | -1.3 | |
2,026,217 | + | Psest_1918 | 0.70 | -0.3 | |
2,026,217 | + | Psest_1918 | 0.70 | -0.0 | |
2,026,218 | - | Psest_1918 | 0.70 | -0.2 | |
2,026,397 | + | Psest_1918 | 0.89 | -1.0 | |
2,026,625 | + | Psest_1919 | 0.14 | -0.2 | |
2,026,879 | + | Psest_1919 | 0.44 | -0.8 | |
2,027,083 | + | Psest_1919 | 0.67 | +0.0 | |
2,027,157 | - | Psest_1919 | 0.76 | +0.6 | |
2,027,186 | - | Psest_1919 | 0.79 | -1.4 | |
2,027,479 | - | Psest_1920 | 0.16 | +1.5 |
Or see this region's nucleotide sequence