Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1791

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
1,885,007	+		Psest_1789	0.90	+0.1
1,885,040	+				-0.1
1,885,041	-				+1.2
1,885,041	-				-0.0
1,885,041	-				-0.5
1,885,041	-				-0.3
1,885,041	-				+0.3
1,885,041	-				-0.1
1,885,041	-				-0.8
1,885,041	-				-0.6
1,885,041	-				+0.7
1,885,041	-				-0.7
1,885,041	-				-0.2
1,885,041	-				-1.3
1,885,044	+				+0.5
1,885,044	+				-0.1
1,885,044	+				+0.0
1,885,044	+				+0.9
1,885,044	+				-0.5
1,885,044	+				-0.4
1,885,044	+				-1.5
1,885,044	+				+0.6
1,885,044	+				-0.8
1,885,044	+				+0.0
1,885,044	+				+0.3
1,885,044	+				-0.3
1,885,044	+				-1.0
1,885,044	+				-0.2
1,885,044	+				+0.4
1,885,044	+				-0.6
1,885,044	+				-0.1
1,885,044	+				+0.2
1,885,045	-				-1.8
1,885,045	-				-0.0
1,885,045	-				-0.1
1,885,045	-				+0.2
1,885,045	-				-0.8
1,885,045	-				-0.5
1,885,045	-				-0.7
1,885,045	-				+1.2
1,885,045	-				-0.1
1,885,045	-				-2.1
1,885,045	-				+0.6
1,885,045	-				-1.6
1,885,050	+				+3.1
1,885,050	+				-0.3
1,885,050	+				-0.8
1,885,050	+				+0.7
1,885,051	-				-0.1
1,885,051	-				-1.9
1,885,051	-				-1.2
1,885,051	-				-0.0
1,885,051	-				-0.9
1,885,051	-				-0.4
1,885,051	-				+0.7
1,885,051	-				-0.0
1,885,051	-				-0.2
1,885,051	-				-0.1
1,885,101	+				-0.1
1,885,171	+				+0.6
1,885,190	+				-0.3
1,885,191	-				+0.2
1,885,776	+		Psest_1790	0.69	-0.4
1,885,776	+		Psest_1790	0.69	+0.1
1,885,776	+		Psest_1790	0.69	-0.1
1,885,777	-		Psest_1790	0.69	-0.3
1,885,777	-		Psest_1790	0.69	+0.1
1,885,819	+		Psest_1790	0.75	-0.0
1,885,820	-		Psest_1790	0.75	+1.0
1,885,824	-		Psest_1790	0.76	-0.2
1,885,824	-		Psest_1790	0.76	+1.0
1,885,828	+		Psest_1790	0.76	-0.6
1,885,828	+		Psest_1790	0.76	-0.1
1,885,828	+		Psest_1790	0.76	+0.2
1,885,828	+		Psest_1790	0.76	+0.8
1,885,828	-		Psest_1790	0.76	-0.4
1,885,829	-		Psest_1790	0.76	+0.6
1,885,879	-		Psest_1790	0.83	+0.5
1,885,946	+				-0.3
1,885,946	+				+1.1
1,885,947	-				+0.5
1,885,947	-				+0.7
1,886,064	+				+0.2
1,886,064	+				-0.1
1,886,155	-		Psest_1791	0.13	+0.2
1,886,155	-		Psest_1791	0.13	+0.2
1,886,155	-		Psest_1791	0.13	-0.0
1,886,404	-		Psest_1791	0.33	-1.0
1,886,566	+		Psest_1791	0.47	-0.8
1,886,567	-		Psest_1791	0.47	-0.4
1,886,567	-		Psest_1791	0.47	-2.1
1,886,567	-		Psest_1791	0.47	-0.3
1,886,572	+		Psest_1791	0.47	+0.1
1,886,573	-		Psest_1791	0.47	-0.8
1,886,573	-		Psest_1791	0.47	-1.1
1,887,397	+		Psest_1792	0.14	-1.3
1,887,398	-		Psest_1792	0.15	+1.4
1,887,400	+		Psest_1792	0.15	-0.3
1,887,400	+		Psest_1792	0.15	+0.0
1,887,400	+		Psest_1792	0.15	+0.9
1,887,401	-		Psest_1792	0.15	-1.0
1,887,401	-		Psest_1792	0.15	-0.1
1,887,742	+		Psest_1792	0.43	+0.9
1,887,742	+		Psest_1792	0.43	-0.3
1,887,743	-		Psest_1792	0.43	-0.1
1,887,787	+		Psest_1792	0.46	-0.6
1,887,850	+		Psest_1792	0.52	-0.8