Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1547 and HP15_1548 are separated by 37 nucleotides HP15_1548 and HP15_1549 are separated by 3 nucleotides
HP15_1547: HP15_1547 - response regulator receiver modulated CheW protein, at 1,630,241 to 1,631,170
_1547
HP15_1548: HP15_1548 - chemotaxis protein methyltransferase CheR, at 1,631,208 to 1,632,035
_1548
HP15_1549: HP15_1549 - major facilitator superfamily MFS_1, at 1,632,039 to 1,633,235
_1549
Position (kb)
1631
1632
1633 Strain fitness (log2 ratio)
-1
0
1 at 1630.258 kb on - strand at 1630.258 kb on - strand at 1630.258 kb on - strand at 1630.260 kb on + strand at 1630.260 kb on + strand at 1630.268 kb on - strand at 1630.304 kb on - strand at 1630.304 kb on - strand at 1630.396 kb on + strand, within HP15_1547 at 1630.402 kb on - strand, within HP15_1547 at 1630.404 kb on - strand, within HP15_1547 at 1630.427 kb on + strand, within HP15_1547 at 1630.562 kb on - strand, within HP15_1547 at 1630.991 kb on - strand, within HP15_1547 at 1631.079 kb on + strand at 1631.164 kb on + strand at 1631.295 kb on - strand, within HP15_1548 at 1631.536 kb on - strand, within HP15_1548 at 1631.931 kb on - strand, within HP15_1548 at 1632.200 kb on - strand, within HP15_1549 at 1632.217 kb on + strand, within HP15_1549 at 1632.225 kb on - strand, within HP15_1549 at 1632.303 kb on - strand, within HP15_1549 at 1632.310 kb on - strand, within HP15_1549 at 1632.310 kb on - strand, within HP15_1549 at 1632.665 kb on + strand, within HP15_1549 at 1632.683 kb on - strand, within HP15_1549 at 1632.690 kb on + strand, within HP15_1549 at 1632.765 kb on - strand, within HP15_1549 at 1632.824 kb on + strand, within HP15_1549
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 1,630,258 - -0.5 1,630,258 - +0.3 1,630,258 - +0.8 1,630,260 + +0.7 1,630,260 + +0.5 1,630,268 - -0.6 1,630,304 - +0.2 1,630,304 - -0.1 1,630,396 + HP15_1547 0.17 +0.2 1,630,402 - HP15_1547 0.17 +0.2 1,630,404 - HP15_1547 0.18 -0.1 1,630,427 + HP15_1547 0.20 +0.1 1,630,562 - HP15_1547 0.35 -0.5 1,630,991 - HP15_1547 0.81 +0.4 1,631,079 + -0.6 1,631,164 + -0.0 1,631,295 - HP15_1548 0.11 +0.0 1,631,536 - HP15_1548 0.40 -1.3 1,631,931 - HP15_1548 0.87 -0.6 1,632,200 - HP15_1549 0.13 +0.1 1,632,217 + HP15_1549 0.15 +1.3 1,632,225 - HP15_1549 0.16 -0.5 1,632,303 - HP15_1549 0.22 +0.1 1,632,310 - HP15_1549 0.23 -0.9 1,632,310 - HP15_1549 0.23 -0.7 1,632,665 + HP15_1549 0.52 +0.5 1,632,683 - HP15_1549 0.54 -0.4 1,632,690 + HP15_1549 0.54 -0.1 1,632,765 - HP15_1549 0.61 -0.5 1,632,824 + HP15_1549 0.66 -0.2
Or see this region's nucleotide sequence