Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1357 and HP15_1359 are separated by 68 nucleotides HP15_1359 and HP15_1358 overlap by 9 nucleotides HP15_1358 and HP15_1360 are separated by 126 nucleotides
HP15_1357: HP15_1357 - gamma-glutamyltranspeptidase periplasmic precursor, at 1,426,664 to 1,428,427
_1357
HP15_1359: HP15_1359 - hypothetical protein, at 1,428,496 to 1,428,720
_1359
HP15_1358: HP15_1358 - formyltetrahydrofolate deformylase, at 1,428,712 to 1,429,425
_1358
HP15_1360: HP15_1360 - DNA gyrase subunit A-like protein, at 1,429,552 to 1,432,173
_1360
Position (kb)
1428
1429
1430 Strain fitness (log2 ratio)
-2
-1
0
1 at 1427.745 kb on - strand, within HP15_1357 at 1427.814 kb on + strand, within HP15_1357 at 1427.831 kb on + strand, within HP15_1357 at 1427.871 kb on + strand, within HP15_1357 at 1427.911 kb on + strand, within HP15_1357 at 1427.913 kb on - strand, within HP15_1357 at 1428.151 kb on + strand, within HP15_1357 at 1428.493 kb on + strand at 1428.749 kb on + strand at 1428.749 kb on + strand at 1428.836 kb on - strand, within HP15_1358 at 1429.023 kb on - strand, within HP15_1358 at 1429.064 kb on + strand, within HP15_1358 at 1429.181 kb on + strand, within HP15_1358 at 1429.192 kb on + strand, within HP15_1358 at 1429.192 kb on + strand, within HP15_1358 at 1429.200 kb on - strand, within HP15_1358 at 1429.200 kb on - strand, within HP15_1358 at 1429.317 kb on + strand, within HP15_1358 at 1429.334 kb on - strand, within HP15_1358 at 1429.334 kb on - strand, within HP15_1358 at 1429.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 1,427,745 - HP15_1357 0.61 +0.4 1,427,814 + HP15_1357 0.65 -0.0 1,427,831 + HP15_1357 0.66 +0.5 1,427,871 + HP15_1357 0.68 -0.9 1,427,911 + HP15_1357 0.71 -0.1 1,427,913 - HP15_1357 0.71 -0.1 1,428,151 + HP15_1357 0.84 -0.6 1,428,493 + +0.2 1,428,749 + -0.1 1,428,749 + -1.8 1,428,836 - HP15_1358 0.17 -1.1 1,429,023 - HP15_1358 0.44 -0.1 1,429,064 + HP15_1358 0.49 -0.7 1,429,181 + HP15_1358 0.66 -0.2 1,429,192 + HP15_1358 0.67 +0.5 1,429,192 + HP15_1358 0.67 -0.7 1,429,200 - HP15_1358 0.68 +0.7 1,429,200 - HP15_1358 0.68 -1.6 1,429,317 + HP15_1358 0.85 -1.5 1,429,334 - HP15_1358 0.87 +1.2 1,429,334 - HP15_1358 0.87 -0.0 1,429,409 - -1.3
Or see this region's nucleotide sequence